diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 01718426ee..de37d19264 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4358,6 +4358,37 @@ atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale.") (license license:gpl2+)))) +(define-public lammps-serial + (package + (inherit lammps) + (name "lammps-serial") + (arguments + (substitute-keyword-arguments (package-arguments lammps) + ((#:make-flags flags) + '(list "CC=gcc" "serial" + "LMP_INC=-DLAMMPS_GZIP \ +-DLAMMPS_JPEG -DLAMMPS_PNG -DLAMMPS_FFMPEG -DLAMMPS_MEMALIGN=64" + "LIB=-gz -ljpeg -lpng -lavcodec")) + ((#:phases phases) + #~(modify-phases #$phases + (replace 'configure + (lambda _ + (substitute* "MAKE/Makefile.serial" + (("SHELL =.*") + (string-append "SHELL=" (which "bash") "\n")) + (("cc ") "gcc ")) + (substitute* "Makefile" + (("SHELL =.*") + (string-append "SHELL=" (which "bash") "\n"))))) + (replace 'install + (lambda _ + (let ((bin (string-append #$output "/bin"))) + (mkdir-p bin) + (install-file "lmp_serial" bin)))))))) + (inputs + (modify-inputs (package-inputs lammps) + (delete "openmpi"))))) + (define-public libbigwig (package (name "libbigwig") |