diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 35 |
1 files changed, 6 insertions, 29 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a552686328..481a2a3bcb 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -680,15 +680,10 @@ bioinformatics programs; a standard sequence class and tools for performing common operations on them; code to perform data classification; code for dealing with alignments; code making it easy to split up parallelizable tasks into separate processes; and more.") - (license (license:non-copyleft "http://www.biopython.org/DIST/LICENSE")) - (properties `((python2-variant . ,(delay python2-biopython)))))) + (license (license:non-copyleft "http://www.biopython.org/DIST/LICENSE")))) (define-public python2-biopython - (let ((base (package-with-python2 (strip-python2-variant python-biopython)))) - (package - (inherit base) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-biopython)) ;; An outdated version of biopython is required for seqmagick, see ;; https://github.com/fhcrc/seqmagick/issues/59 @@ -1427,7 +1422,6 @@ also includes an interface for tabix.") (sha256 (base32 "1q8wnj2kga9nz1lwc4w7qv52smfm536hp6mc8w6s53lhyj0mpi22")))) - (properties `((python2-variant . ,(delay python2-twobitreader)))) (build-system python-build-system) (arguments '(;; Tests are not distributed in the PyPi release. @@ -1444,11 +1438,7 @@ UCSC genome browser.") (license license:artistic2.0))) (define-public python2-twobitreader - (let ((base (package-with-python2 (strip-python2-variant python-twobitreader)))) - (package - (inherit base) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-twobitreader)) (define-public python-plastid (package @@ -1460,7 +1450,6 @@ UCSC genome browser.") (sha256 (base32 "1sqkz5d3b9kf688mp7k771c87ins42j7j0whmkb49cb3fsg8s8lj")))) - (properties `((python2-variant . ,(delay python2-plastid)))) (build-system python-build-system) (arguments ;; Some test files are not included. @@ -1485,12 +1474,7 @@ high-throughput sequencing data – with an emphasis on simplicity.") (license license:bsd-3))) (define-public python2-plastid - (let ((base (package-with-python2 (strip-python2-variant python-plastid)))) - (package - (inherit base) - ;; setuptools is required at runtime - (propagated-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-propagated-inputs base)))))) + (package-with-python2 python-plastid)) (define-public cd-hit (package @@ -1939,10 +1923,7 @@ accessing bigWig files.") (license license:expat))) (define-public python2-pybigwig - (let ((pybigwig (package-with-python2 python-pybigwig))) - (package (inherit pybigwig) - (native-inputs - `(("python-setuptools" ,python2-setuptools)))))) + (package-with-python2 python-pybigwig)) (define-public python-dendropy (package @@ -4568,11 +4549,7 @@ sequence itself can be retrieved from these databases.") (license license:bsd-3))) (define-public python2-screed - (let ((base (package-with-python2 (strip-python2-variant python-screed)))) - (package - (inherit base) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-screed)) (define-public sra-tools (package |