diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 113 |
1 files changed, 113 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3002b20181..123c677938 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -971,6 +971,28 @@ size and can be easily tested locally before being sent to a remote.") the system clipboards.") (license license:gpl3))) +(define-public r-clvalid + (package + (name "r-clvalid") + (version "0.7") + (source (origin + (method url-fetch) + (uri (cran-uri "clValid" version)) + (sha256 + (base32 + "18aiyjhnh5mfdxbzns4cy0r8bymfikhwkybpn4g04qhli5ls8z83")))) + (properties `((upstream-name . "clValid"))) + (build-system r-build-system) + (propagated-inputs (list r-class r-cluster)) + (home-page "https://cran.r-project.org/package=clValid") + (synopsis "Validation of clustering results") + (description + "Statistical and biological validation of clustering results. This +package implements Dunn Index, Silhouette, Connectivity, Stability, BHI and +BSI. Further information can be found in Brock, G et al. (2008) <doi: +10.18637/jss.v025.i04>.") + (license license:lgpl3))) + (define-public r-dlm (package (name "r-dlm") @@ -6819,6 +6841,30 @@ Rscript front-end and facilitates turning an R script into an executable script.") (license license:gpl3+))) +(define-public r-aricode + (package + (name "r-aricode") + (version "1.0.1") + (source (origin + (method url-fetch) + (uri (cran-uri "aricode" version)) + (sha256 + (base32 + "0772l9gyrih48l1kymih0mb7szjqqnwcm4lzj0yzp4cs8l2mdf4f")))) + (properties `((upstream-name . "aricode"))) + (build-system r-build-system) + (propagated-inputs (list r-matrix r-rcpp)) + (home-page "https://github.com/jchiquet/aricode") + (synopsis "Efficient computations of standard clustering comparison measures") + (description + "This package implements an efficient O(n) algorithm based on +bucket-sorting for fast computation of standard clustering comparison +measures. Available measures include @dfn{adjusted Rand index} (ARI), +@dfn{normalized information distance} (NID), @dfn{normalized mutual +information} (NMI), @dfn{adjusted mutual information} (AMI), @dfn{normalized +variation information} (NVI) and entropy.") + (license license:gpl3+))) + (define-public r-debugme (package (name "r-debugme") @@ -7974,6 +8020,29 @@ sample Robust Rank-Order Distributional Test.") exponential, logarithm, square root, and related quantities.") (license license:gpl2+))) +(define-public r-exposition + (package + (name "r-exposition") + (version "2.8.23") + (source (origin + (method url-fetch) + (uri (cran-uri "ExPosition" version)) + (sha256 + (base32 + "0x9400ggmgrnaish0cfgnyvw549g4ibfv9aj6vzq7j68n58vq405")))) + (properties `((upstream-name . "ExPosition"))) + (build-system r-build-system) + (propagated-inputs (list r-prettygraphs)) + (home-page "https://cran.r-project.org/package=ExPosition") + (synopsis "Exploratory analysis with the singular value decomposition") + (description + "This package provides a variety of descriptive multivariate analyses +with the singular value decomposition, such as principal components analysis, +correspondence analysis, and multidimensional scaling. See An ExPosition of +the Singular Value Decomposition in R (Beaton et al 2014) +<doi:10.1016/j.csda.2013.11.006>.") + (license license:gpl2))) + (define-public r-complexplus (package (name "r-complexplus") @@ -9064,6 +9133,30 @@ and rows. The fst format allows for random access of stored data and compression with the LZ4 and ZSTD compressors.") (license license:agpl3))) +(define-public r-snftool + (package + (name "r-snftool") + (version "2.3.1") + (source (origin + (method url-fetch) + (uri (cran-uri "SNFtool" version)) + (sha256 + (base32 + "05hz230aq5wbzhknxzr4iqv3nqjhbpf66n6bp1rc5h2jgz2yfbwq")))) + (properties `((upstream-name . "SNFtool"))) + (build-system r-build-system) + (propagated-inputs (list r-alluvial r-exposition)) + (home-page "https://cran.r-project.org/package=SNFtool") + (synopsis "Similarity network fusion") + (description + "Similarity Network Fusion takes multiple views of a network and fuses +them together to construct an overall status matrix. The input to our +algorithm can be feature vectors, pairwise distances, or pairwise +similarities. The learned status matrix can then be used for retrieval, +clustering, and classification.") + ;; Any version of the GPL + (license license:gpl3+))) + (define-public r-snowfall (package (name "r-snowfall") @@ -10350,6 +10443,26 @@ from the @code{stats} package, as well as numerous other model classes from other add-on packages.") (license license:expat))) +(define-public r-prettygraphs + (package + (name "r-prettygraphs") + (version "2.1.6") + (source (origin + (method url-fetch) + (uri (cran-uri "prettyGraphs" version)) + (sha256 + (base32 + "0yjpwxdy9mkj2k33zvd5klyv4ava46i19yls87n0bvf79y90ikpy")))) + (properties `((upstream-name . "prettyGraphs"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=prettyGraphs") + (synopsis "Publication-quality graphics") + (description + "This package provides simple and crisp publication-quality graphics for +the ExPosition family of packages. See An ExPosition of the Singular Value +Decomposition in R (Beaton et al 2014) <doi:10.1016/j.csda.2013.11.006>.") + (license license:gpl2))) + (define-public r-insight (package (name "r-insight") |