diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 95 |
1 files changed, 71 insertions, 24 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1bd20b12d3..f6f4a08aab 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -83,6 +83,52 @@ the system clipboards.") (license license:gpl3))) +(define-public r-sys + (package + (name "r-sys") + (version "2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "sys" version)) + (sha256 + (base32 + "10ml2492bdllh6cz2zl192ip0fdgjkkgayggd3ghswsj5gjv5hrh")))) + (build-system r-build-system) + (home-page "https://github.com/jeroen/sys") + (synopsis "Powerful and reliable tools for running system commands in R") + (description + "This package provides drop-in replacements for the base @code{system2()} +function with fine control and consistent behavior across platforms. It +supports clean interruption, timeout, background tasks, and streaming STDIN / +STDOUT / STDERR over binary or text connections. The package also provides +functions for evaluating expressions inside a temporary fork. Such +evaluations have no side effects on the main R process, and support reliable +interrupts and timeouts. This provides the basis for a sandboxing +mechanism.") + (license license:expat))) + +(define-public r-askpass + (package + (name "r-askpass") + (version "1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "askpass" version)) + (sha256 + (base32 + "07q0ik8jzk44vpwh48rr3fnpd7dzsdhjjsl4l850rffv3dyq4h6v")))) + (build-system r-build-system) + (propagated-inputs `(("r-sys" ,r-sys))) + (home-page "https://github.com/jeroen/askpass") + (synopsis "Safe password entry for R") + (description + "This package provides cross-platform utilities for prompting the user +for credentials or a passphrase, for example to authenticate with a server or +read a protected key.") + (license license:expat))) + (define-public r-vegan (package (name "r-vegan") @@ -927,14 +973,14 @@ applications. That is, compute distances and related measures for angular (define-public r-ggmap (package (name "r-ggmap") - (version "2.6.1") + (version "2.6.2") (source (origin (method url-fetch) (uri (cran-uri "ggmap" version)) (sha256 (base32 - "0mssb09w818jv58h7mly9y181pzv22sgcd4a079cfpq04bs0wigw")))) + "144x6ycb2c3fvy5c68ww53m6gzi6kfvas7cpbn071z08n4xgb72f")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -1062,13 +1108,13 @@ XML. To learn more about the Abbyy OCR API, see @url{http://ocrsdk.com/}.") (define-public r-colorspace (package (name "r-colorspace") - (version "1.3-2") + (version "1.4-0") (source (origin (method url-fetch) (uri (cran-uri "colorspace" version)) (sha256 - (base32 "0d1ya7hx4y58n5ivwmdmq2zgh0g2sbv7ykh13n85c1355csd57yx")))) + (base32 "0mpmvz2sycjp4c9y3v3qin7mdjy812hwi7cyjnblcw6xb1ckq06f")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/colorspace") (synopsis "Color space manipulation") @@ -2038,14 +2084,14 @@ functions from LINPACK.") (define-public r-fitdistrplus (package (name "r-fitdistrplus") - (version "1.0-11") + (version "1.0-14") (source (origin (method url-fetch) (uri (cran-uri "fitdistrplus" version)) (sha256 (base32 - "12hckg3y5j3zh9q1gwxkc27q813p2r42iqp7wdfiq6nj55jrh6w6")))) + "10q08wsv8v3w7797jdvvv60bgrf1bi6438wf0jcqv81ays82a245")))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass) @@ -2809,14 +2855,14 @@ Laplace approximation and adaptive Gauss-Hermite quadrature.") (define-public r-jomo (package (name "r-jomo") - (version "2.6-5") + (version "2.6-6") (source (origin (method url-fetch) (uri (cran-uri "jomo" version)) (sha256 (base32 - "109q5m69clrvvialxdxznd0wdb54ajhx84nj8slx8bf909a427mj")))) + "1048qb12cx7fs156jcqzwkfmsjadkgnrqd0krznyxpn873zr9lq2")))) (build-system r-build-system) (propagated-inputs `(("r-lme4" ,r-lme4) @@ -3042,16 +3088,18 @@ structure.") (define-public r-vioplot (package (name "r-vioplot") - (version "0.2") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "vioplot" version)) (sha256 (base32 - "16wkb26kv6qr34hv5zgqmgq6zzgysg9i78pvy2c097lr60v087v0")))) + "1ddmmqq7qrnvr5q518afnysrl7ccr8am9njknv3dpwaqzcdr9akn")))) (build-system r-build-system) - (propagated-inputs `(("r-sm" ,r-sm))) + (propagated-inputs + `(("r-sm" ,r-sm) + ("r-zoo" ,r-zoo))) (home-page "http://wsopuppenkiste.wiso.uni-goettingen.de/~dadler") (synopsis "Violin plot") (description @@ -7222,13 +7270,13 @@ series.") (define-public r-acceptancesampling (package (name "r-acceptancesampling") - (version "1.0-5") + (version "1.0-6") (source (origin (method url-fetch) (uri (cran-uri "AcceptanceSampling" version)) (sha256 - (base32 "18krmmyn8pn11aqd81kbvka68lnd36mnpdh7p3pz9r4m4vjj007x")))) + (base32 "1z3rmln63ki2kik9kinbwr9qhr32ggbmh4mm3xqy6di119n47ca9")))) (properties `((upstream-name . "AcceptanceSampling"))) (build-system r-build-system) @@ -7320,14 +7368,14 @@ cross-sectional, time series, clustered, panel, and longitudinal data.") (define-public r-th-data (package (name "r-th-data") - (version "1.0-9") + (version "1.0-10") (source (origin (method url-fetch) (uri (cran-uri "TH.data" version)) (sha256 (base32 - "03xfvww0krw0fn76qmmvrj7dx4shin57qafwhkrggfg25hbqlcfq")))) + "0mgz7aj2d9abbmdr65zgmg1ddp3fdbs3mfj83r5xadh5ldkir2k1")))) (properties `((upstream-name . "TH.data"))) (build-system r-build-system) (propagated-inputs @@ -7371,14 +7419,14 @@ Hothorn, Westfall, 2010, CRC Press).") (define-public r-emmeans (package (name "r-emmeans") - (version "1.3.1") + (version "1.3.2") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "1sf7gmdb7aqhdpx489vg693ivc5677n4yjx27ixv8v7pjh8mlwwx")))) + "0mg6y007hfmr601cq4jgxl5ncwbx79kkh7xs2i504m0rinxj8bf5")))) (build-system r-build-system) (propagated-inputs `(("r-estimability" ,r-estimability) @@ -8490,18 +8538,17 @@ Scientific.") (define-public r-activity (package (name "r-activity") - (version "1.1") + (version "1.2") (source (origin (method url-fetch) (uri (cran-uri "activity" version)) (sha256 (base32 - "1lqajgxfps2h6amz1791vp3f52rs9ghmanq1nqfxqd2jmk3idkrx")))) + "11w2bz6p9xbzdh6773dmbbh6rws0h5dj18p8m0ivzizgq932vdzs")))) (build-system r-build-system) (propagated-inputs `(("r-circular" ,r-circular) - ("r-overlap" ,r-overlap) ("r-pbapply" ,r-pbapply))) (home-page "https://cran.r-project.org/web/packages/activity/") (synopsis "Animal activity statistics") @@ -8697,14 +8744,14 @@ in-memory raw vectors.") (define-public r-waveslim (package (name "r-waveslim") - (version "1.7.5") + (version "1.7.5.1") (source (origin (method url-fetch) (uri (cran-uri "waveslim" version)) (sha256 (base32 - "0lqslkihgrd7rbihqhhk57m9vkbnfsznkvk8430cvbcsn7vridii")))) + "0mky0nb4xxp8rybp87mxw2f1q6k400wpxv01zr4injv7ja6028xk")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -9540,14 +9587,14 @@ limitations\" using the GNU Multiple Precision library.") (define-public r-rmpfr (package (name "r-rmpfr") - (version "0.7-1") + (version "0.7-2") (source (origin (method url-fetch) (uri (cran-uri "Rmpfr" version)) (sha256 (base32 - "0172px5ryi7i0gyyin9z2bzif8vnj292gk0s1w5p3c12g9hj2c4v")))) + "1zq3as34r27v2yc729731997wdhxb6cs5ilmak4nmsljabnac7gc")))) (properties `((upstream-name . "Rmpfr"))) (build-system r-build-system) (inputs |