diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 365 |
1 files changed, 251 insertions, 114 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index cc23c53f4c..5bd5c60d49 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -51,6 +51,7 @@ #:use-module (gnu packages gtk) #:use-module (gnu packages haskell) #:use-module (gnu packages image) + #:use-module (gnu packages imagemagick) #:use-module (gnu packages javascript) #:use-module (gnu packages lisp) #:use-module (gnu packages machine-learning) @@ -84,17 +85,39 @@ the system clipboards.") (license license:gpl3))) +(define-public r-ellipsis + (package + (name "r-ellipsis") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "ellipsis" version)) + (sha256 + (base32 + "0pw94qpg81xmsdsagpqxddv7m2cmdszmyyq99dk3caqqj01z7wg6")))) + (build-system r-build-system) + (home-page "https://github.com/hadley/ellipsis") + (synopsis "Tools for working with additional arguments") + (description + "In S3 generics, it's useful to take @code{...} so that methods can have +additional arguments. But this flexibility comes at a cost: misspelled +arguments will be silently ignored. The @code{ellipsis} package is an +experiment that allows a generic to warn if any arguments passed in @code{...} +are not used.") + (license license:gpl3))) + (define-public r-sys (package (name "r-sys") - (version "2.1") + (version "3.0") (source (origin (method url-fetch) (uri (cran-uri "sys" version)) (sha256 (base32 - "10ml2492bdllh6cz2zl192ip0fdgjkkgayggd3ghswsj5gjv5hrh")))) + "1g0q1f56qmp3x5gja19qrmgk3j4d89yp16z1ziv1jn5p4dlmfpxh")))) (build-system r-build-system) (home-page "https://github.com/jeroen/sys") (synopsis "Powerful and reliable tools for running system commands in R") @@ -133,14 +156,14 @@ read a protected key.") (define-public r-vegan (package (name "r-vegan") - (version "2.5-3") + (version "2.5-4") (source (origin (method url-fetch) (uri (cran-uri "vegan" version)) (sha256 (base32 - "023xznh0iy0496icpchadmp7a3rk3nj9s48fvwlvp3dssw58yp3c")))) + "1q4khii0xbjwmkida0b35q8rmwhg325qizjwz6slkjhz250a85ji")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -314,14 +337,14 @@ that.") (define-public r-readxl (package (name "r-readxl") - (version "1.2.0") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "readxl" version)) (sha256 (base32 - "1mwm389skl4ahcwsmhvx31pjkrn6y9igpnhsczwg6yza886q7j19")))) + "1p7snd8lznyinp0nyg6bsqwn9alh3pnnj77bfg865ingdl1d2yc3")))) (build-system r-build-system) (propagated-inputs `(("r-cellranger" ,r-cellranger) @@ -422,13 +445,13 @@ in systems and applications.") (define-public r-servr (package (name "r-servr") - (version "0.11") + (version "0.13") (source (origin (method url-fetch) (uri (cran-uri "servr" version)) (sha256 (base32 - "0yj3p1risf269n25dd56lqv82dsxv6a0aq4bcc1ddn9wv7h2xdfi")))) + "1n5haqkshrxcx557f1k7nrisvq3wak8v370s2r6yv691b8hvbscs")))) (build-system r-build-system) (propagated-inputs `(("r-httpuv" ,r-httpuv) @@ -616,7 +639,7 @@ and vice-versa.") (define-public r-shiny (package (name "r-shiny") - (version "1.1.0") + (version "1.2.0") (source (origin (method git-fetch) @@ -626,7 +649,7 @@ and vice-versa.") (file-name (git-file-name name version)) (sha256 (base32 - "041q2gzvzs13syfhbirmkik96asdji8dxnnbs63j7v1ks97hrvvz")))) + "1kl3dh68h4cnrm3rqn9pddk5n6bsmr5x0626bkfv0qqi0q92zin4")))) (build-system r-build-system) (arguments `(#:modules ((guix build r-build-system) @@ -677,8 +700,6 @@ and vice-versa.") (minify source #:target target))) '(("jqueryui/jquery-ui.js" . "jqueryui/jquery-ui.min.js") - ("showdown/src/showdown.js" . - "showdown/compressed/showdown.js") ("datepicker/js/bootstrap-datepicker.js" . "datepicker/js/bootstrap-datepicker.min.js") ("ionrangeslider/js/ion.rangeSlider.js" . @@ -974,28 +995,33 @@ applications. That is, compute distances and related measures for angular (define-public r-ggmap (package (name "r-ggmap") - (version "2.6.2") + (version "3.0.0") (source (origin (method url-fetch) (uri (cran-uri "ggmap" version)) (sha256 (base32 - "144x6ycb2c3fvy5c68ww53m6gzi6kfvas7cpbn071z08n4xgb72f")))) + "13dmzl6z62pzjiffilarkji46vy0sacxa8a7mhrhc3biq3ylzhln")))) (build-system r-build-system) (propagated-inputs - `(("r-digest" ,r-digest) - ("r-geosphere" ,r-geosphere) + `(("r-bitops" ,r-bitops) + ("r-digest" ,r-digest) + ("r-dplyr" ,r-dplyr) ("r-ggplot2" ,r-ggplot2) + ("r-glue" ,r-glue) + ("r-httr" ,r-httr) ("r-jpeg" ,r-jpeg) - ("r-mapproj" ,r-mapproj) + ("r-magrittr" ,r-magrittr) ("r-plyr" ,r-plyr) ("r-png" ,r-png) - ("r-proto" ,r-proto) - ("r-reshape2" ,r-reshape2) + ("r-purrr" ,r-purrr) ("r-rgooglemaps" ,r-rgooglemaps) ("r-rjson" ,r-rjson) - ("r-scales" ,r-scales))) + ("r-scales" ,r-scales) + ("r-stringr" ,r-stringr) + ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr))) (home-page "https://github.com/dkahle/ggmap") (synopsis "Spatial visualization with ggplot2") (description "This package provides a collection of functions to visualize @@ -1007,14 +1033,14 @@ including functions for geolocation and routing.") (define-public r-haven (package (name "r-haven") - (version "2.0.0") + (version "2.1.0") (source (origin (method url-fetch) (uri (cran-uri "haven" version)) (sha256 (base32 - "12qh8nba1dxlsmcihrx126wmjyj8n511k17vqj10lfgvpwq2sydy")))) + "0x5fwc4q2gdxwwp5sxdd6q17jhpisd769y9kv0xgnjcm0cdwz8f0")))) (build-system r-build-system) (inputs `(("zlib" ,zlib))) @@ -1753,14 +1779,14 @@ plot networks.") (define-public r-proxy (package (name "r-proxy") - (version "0.4-22") + (version "0.4-23") (source (origin (method url-fetch) (uri (cran-uri "proxy" version)) (sha256 (base32 - "0l0ff8irmmvic941is290hd5vszyhaj5nfwna4v3w9c1zk5nr1ma")))) + "17b6qfllqrhzrxqgx7dccffgybnkcria5a68ap5ly3plg04ypm4x")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/proxy") (synopsis "Distance and similarity measures") @@ -2004,14 +2030,14 @@ classes in the @code{stats4} package.") (define-public r-emdbook (package (name "r-emdbook") - (version "1.3.10") + (version "1.3.11") (source (origin (method url-fetch) (uri (cran-uri "emdbook" version)) (sha256 (base32 - "0880cx6rqm9vgd2zxnd2k0igfl80gy7ak15w36clwlzavab59hmv")))) + "0a515jdzvg87npvrh7md7zp0v5nlz7c2jr7pba5dql6slb0d8j7q")))) (build-system r-build-system) (propagated-inputs `(("r-bbmle" ,r-bbmle) @@ -2392,18 +2418,16 @@ dimensioned arrays.") (define-public r-rmysql (package (name "r-rmysql") - (version "0.10.16") + (version "0.10.17") (source (origin (method url-fetch) (uri (cran-uri "RMySQL" version)) (sha256 (base32 - "1gh4b730g2v78jg5iln8fkz808ri2vhnhnw43wzkkjpy53jh48sp")))) + "1xamf99ih44dvaxg5x4ivj0hkqssmabgqd7gh8b8q1srw7yg8kbm")))) (properties `((upstream-name . "RMySQL"))) (build-system r-build-system) - (native-inputs - `(("pkg-config" ,pkg-config))) (inputs `(("mariadb" ,mariadb) ("zlib" ,zlib))) @@ -2515,17 +2539,15 @@ multivariate and 5 functional classification problems are included.") (define-public r-gower (package (name "r-gower") - (version "0.1.2") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "gower" version)) (sha256 (base32 - "1mbrj1lam3jfbby2j32shmmj5cn09zx3rkxbamq7q8sdg39b54gb")))) + "0x16k0nixgbayh3g4didacn0gmnl5fdfxa0l323phphmimyj49zl")))) (build-system r-build-system) - (native-inputs - `(("r-knitr" ,r-knitr))) (home-page "https://github.com/markvanderloo/gower") (synopsis "Gower's distance") (description @@ -2863,14 +2885,14 @@ Laplace approximation and adaptive Gauss-Hermite quadrature.") (define-public r-jomo (package (name "r-jomo") - (version "2.6-6") + (version "2.6-7") (source (origin (method url-fetch) (uri (cran-uri "jomo" version)) (sha256 (base32 - "1048qb12cx7fs156jcqzwkfmsjadkgnrqd0krznyxpn873zr9lq2")))) + "0lyvi32aikkvwdj0y2hc13kmmi0cw1icg8z9lcw10l8326sxm0vf")))) (build-system r-build-system) (propagated-inputs `(("r-lme4" ,r-lme4) @@ -2936,14 +2958,14 @@ analysis of multiply imputed data sets.") (define-public r-mice (package (name "r-mice") - (version "3.3.0") + (version "3.4.0") (source (origin (method url-fetch) (uri (cran-uri "mice" version)) (sha256 (base32 - "1p0ipbqk5aqdi7iikw3qrjyvdi9sdhpnw1h5mwakwvv0yl0pzbyx")))) + "0rdamj1j9z3kxmi27pc79v6mhh8rgxaxz4xz70ybf8kqh2x66cgm")))) (build-system r-build-system) (propagated-inputs `(("r-broom" ,r-broom) @@ -3586,14 +3608,14 @@ iVAT).") (define-public r-xfun (package (name "r-xfun") - (version "0.4") + (version "0.5") (source (origin (method url-fetch) (uri (cran-uri "xfun" version)) (sha256 (base32 - "0991ywgc2dsraba91kkj37akhfzhzn02cnz7c88hhdis9kag3pwv")))) + "1wkrapc490r9l9z6mz623zn9ijq64mckc17xg2s7n3s9yaxj98lb")))) (build-system r-build-system) (home-page "https://github.com/yihui/xfun") (synopsis "Miscellaneous functions") @@ -3694,14 +3716,14 @@ automatically.") (define-public r-metap (package (name "r-metap") - (version "1.0") + (version "1.1") (source (origin (method url-fetch) (uri (cran-uri "metap" version)) (sha256 (base32 - "18rzvqfzyk8fn54gjvy2qd21nk9w69j7ihww477ma3f3ab6i982h")))) + "10kv7z8pik5iy374h399vws0ldf41y2nczlwh8axqf9dcwl084i0")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice) @@ -3719,15 +3741,18 @@ published results; and a routine for graphical display.") (define-public r-network (package (name "r-network") - (version "1.13.0.1") + (version "1.14-377") (source (origin (method url-fetch) (uri (cran-uri "network" version)) (sha256 (base32 - "1bbkbqkqf1d7irfwh08c13c2pfypir1ssvlqrln83irqns1ikdv0")))) + "0iiy5n17kysrdfs20zr7qald4lwkvws0axi1qkr8f7vzv7w04g01")))) (build-system r-build-system) + (propagated-inputs + `(("r-magrittr" ,r-magrittr) + ("r-tibble" ,r-tibble))) (home-page "https://statnet.org/") (synopsis "Classes for relational data") (description @@ -3852,14 +3877,14 @@ provides some missing S-PLUS functionality in R.") (define-public r-ifultools (package (name "r-ifultools") - (version "2.0-4") + (version "2.0-5") (source (origin (method url-fetch) (uri (cran-uri "ifultools" version)) (sha256 (base32 - "0pv2msaa1rmj8csxdclzi2jwg9pfdvh87blj9j3xa3myisglq092")))) + "040kvbczcmmbaiaz0k0pdq9af541pjj6iwzh1a3w4szh9w6b5a3j")))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass) @@ -4396,14 +4421,14 @@ environment within Shiny.") (define-public r-radiant-data (package (name "r-radiant-data") - (version "0.9.7") + (version "0.9.9") (source (origin (method url-fetch) (uri (cran-uri "radiant.data" version)) (sha256 (base32 - "1f98ahki0kyb27gl55a859zb0lsvk9gddd9f54y767xfs6h89cgk")) + "17mgm0sggh4f7ihqmj9m3996p3pqc7h2cwx6ll1ha3kg5mx0znyn")) (modules '((guix build utils))) (snippet '(begin @@ -4439,7 +4464,7 @@ environment within Shiny.") ("r-shiny" ,r-shiny) ("r-shinyfiles" ,r-shinyfiles) ("r-shinyace" ,r-shinyace) - ("r-summarytools" ,r-summarytools) + ("r-stringi" ,r-stringi) ("r-tibble" ,r-tibble) ("r-tidyr" ,r-tidyr) ("r-writexl" ,r-writexl))) @@ -4604,14 +4629,14 @@ specific S3-method.") (define-public r-vim (package (name "r-vim") - (version "4.7.0") + (version "4.8.0") (source (origin (method url-fetch) (uri (cran-uri "VIM" version)) (sha256 (base32 - "1vjcs5wvjv94ln01d94h9rs4j50d3ky4n26mm3prgh13raylrmnd")))) + "08x4a4yzgp8adgrv7a3666yma4b60n64mcsnvhzmwdy023f4ysrw")))) (properties `((upstream-name . "VIM"))) (build-system r-build-system) (propagated-inputs @@ -4622,6 +4647,7 @@ specific S3-method.") ("r-laeken" ,r-laeken) ("r-mass" ,r-mass) ("r-nnet" ,r-nnet) + ("r-ranger" ,r-ranger) ("r-rcpp" ,r-rcpp) ("r-robustbase" ,r-robustbase) ("r-sp" ,r-sp) @@ -4642,14 +4668,14 @@ multivariate plot methods.") (define-public r-fnn (package (name "r-fnn") - (version "1.1.2.2") + (version "1.1.3") (source (origin (method url-fetch) (uri (cran-uri "FNN" version)) (sha256 (base32 - "09k3k0h9ikbwq6225l7gd0nhimbji722680cr66c8n7zpvxn06mm")))) + "0cllqlnynm5yaj4r64mqyyfc8phkb38rwssq8k8ikgfgr4jklxny")))) (properties `((upstream-name . "FNN"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/FNN") @@ -4760,14 +4786,14 @@ evaluated by the @dfn{Akaike Information Criterion} (AIC).") (define-public r-arules (package (name "r-arules") - (version "1.6-2") + (version "1.6-3") (source (origin (method url-fetch) (uri (cran-uri "arules" version)) (sha256 (base32 - "0vnss6akk3564kbci3h5rq8ylpckz77cgmflly3gn6fki66f7g96")))) + "0dimrq1pz449z0mz9m87nhm5bpc0v789bcc3lghhh97wwi5zah9y")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) @@ -4855,14 +4881,14 @@ misclassification probabilities of different models.") (define-public r-zip (package (name "r-zip") - (version "1.0.0") + (version "2.0.0") (source (origin (method url-fetch) (uri (cran-uri "zip" version)) (sha256 (base32 - "0rgr9pcdhdq3k8n29h2ircp3ri1ibhrx81gja1y7331v15xyrabg")))) + "0a86x6a2cy0lkx98yljk9acb6q3ksz9y5acfaqnmbvnn77pibg86")))) (build-system r-build-system) (home-page "https://github.com/gaborcsardi/zip") (synopsis "Cross-platform Zip compression") @@ -4934,14 +4960,14 @@ simple method for converting between file types.") (define-public r-maptools (package (name "r-maptools") - (version "0.9-4") + (version "0.9-5") (source (origin (method url-fetch) (uri (cran-uri "maptools" version)) (sha256 (base32 - "1753kgyc4kmbb5h6knz5wgvvvj8v77kzm8lz0kwz05m5k3spa24k")))) + "1pbvcn9xfx0hxq1ppbfg9xm5j04q4c15nj983yjmg7dlkzq135ax")))) (build-system r-build-system) (propagated-inputs `(("r-foreign" ,r-foreign) @@ -4962,14 +4988,14 @@ exchanging spatial objects with other R packages.") (define-public r-later (package (name "r-later") - (version "0.7.5") + (version "0.8.0") (source (origin (method url-fetch) (uri (cran-uri "later" version)) (sha256 (base32 - "0xhwn37makzm85zb6w5acc7svzibxcnz69rks0kxw22vapkxwz1i")))) + "08g503xjxrfxvrzj0cavsrz4m8ykbha64344j1w2r6v17js2hakb")))) (build-system r-build-system) (propagated-inputs `(("r-bh" ,r-bh) @@ -5146,14 +5172,14 @@ obtain a better initial configuration in non-metric MDS.") (define-public r-reticulate (package (name "r-reticulate") - (version "1.10") + (version "1.11.1") (source (origin (method url-fetch) (uri (cran-uri "reticulate" version)) (sha256 (base32 - "0bz3lxbisjwn6cv23090zivpy0bxcncr82g5qja13l37i8xnvqsq")))) + "1cyb92dvv9iibsk28i0gm5hm2xqbsn0y6d67id74c8rhai9y8i9v")))) (build-system r-build-system) (inputs `(("python" ,python))) (propagated-inputs @@ -5238,14 +5264,14 @@ movies, and TV shows.") (define-public r-ggsignif (package (name "r-ggsignif") - (version "0.4.0") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "ggsignif" version)) (sha256 (base32 - "1rn58d7pb3axk6chiihryykrzw76adaa2yiafq4d0j6qbhax78f7")))) + "0z04g5kqdj66fyfxb5d2m7njkqd7idbiy4xgsnxdh5pbh3cr643x")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2))) @@ -5597,14 +5623,14 @@ references and Rd files.") (define-public r-officer (package (name "r-officer") - (version "0.3.2") + (version "0.3.3") (source (origin (method url-fetch) (uri (cran-uri "officer" version)) (sha256 (base32 - "14b6ii9h3fi5g8ja929mfhxps9r7x78flqjdy437y9aygkhmiz2i")))) + "1ggdp8pbspn24sjshx1h48klivrx401vwk2df49j4wpwxh6dx26y")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) @@ -5613,6 +5639,7 @@ references and Rd files.") ("r-magrittr" ,r-magrittr) ("r-r6" ,r-r6) ("r-rcpp" ,r-rcpp) + ("r-rlang" ,r-rlang) ("r-uuid" ,r-uuid) ("r-xml2" ,r-xml2) ("r-zip" ,r-zip))) @@ -5760,14 +5787,14 @@ parse and convert strings into cases like snake or camel among others.") (define-public r-prediction (package (name "r-prediction") - (version "0.3.6.1") + (version "0.3.6.2") (source (origin (method url-fetch) (uri (cran-uri "prediction" version)) (sha256 (base32 - "1znxpacd79fjkf84w3493p1vmafanqfxsspwpwpkmda323bsxj0n")))) + "0kx7xbm2j6c8h6gk1iig4vfpg877psg16j74hl7zc2mv40sc6dy5")))) (build-system r-build-system) (propagated-inputs `(("r-data-table" ,r-data-table))) @@ -5897,23 +5924,24 @@ functions.") (define-public r-flextable (package (name "r-flextable") - (version "0.4.6") + (version "0.5.1") (source (origin (method url-fetch) (uri (cran-uri "flextable" version)) (sha256 (base32 - "0fa42dvf0wyl91w4v0rywm3xgw9n03cfyl28ficrv8iabz4k4382")))) + "0arxgal67ahsq8v0zbvc767qadn7lg3f7mmqa9gjjz6sri0y6gsx")))) (build-system r-build-system) (propagated-inputs - `(("r-gdtools" ,r-gdtools) + `(("r-data-table" ,r-data-table) + ("r-gdtools" ,r-gdtools) ("r-htmltools" ,r-htmltools) ("r-knitr" ,r-knitr) + ("r-magick" ,r-magick) ("r-officer" ,r-officer) - ("r-r6" ,r-r6) + ("r-rlang" ,r-rlang) ("r-rmarkdown" ,r-rmarkdown) - ("r-stringr" ,r-stringr) ("r-xml2" ,r-xml2))) (home-page "https://davidgohel.github.io/flextable") (synopsis "Functions for tabular reporting") @@ -6071,14 +6099,14 @@ and automatically generate usage notices.") (define-public r-hash (package (name "r-hash") - (version "2.2.6") + (version "2.2.6.1") (source (origin (method url-fetch) (uri (cran-uri "hash" version)) (sha256 (base32 - "0mkx59bmni3b283znvbndnkbar85fzavzdfgmwrhskidsqcz34yz")))) + "0b3fl0rvgwb992knl81vm99lsldg5clvaqjh6mamm6zqmb6dz056")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/hash/") (synopsis "Implementation of hash/associated arrays/dictionaries") @@ -6306,13 +6334,13 @@ the analyzed items.") (define-public r-slam (package (name "r-slam") - (version "0.1-44") + (version "0.1-45") (source (origin (method url-fetch) (uri (cran-uri "slam" version)) (sha256 - (base32 "11n956kid70931z0qyiql3v7nac1cfkamq44kzf9wl670pf8b033")))) + (base32 "0xvj8va6xd7zkn3l4a5ad7v62s7xmkz8frq7gpcl3b6vqwckkaw4")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/slam/") (synopsis "Sparse lightweight arrays and matrices") @@ -6791,26 +6819,55 @@ not found in either TASSEL or @code{r-qtl} in addition to visualization of genotypes as \"graphical genotypes\".") (license license:gpl3))) +(define-public r-furrr + (package + (name "r-furrr") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "furrr" version)) + (sha256 + (base32 + "1ld9aa9hydna94hgm6p91zjbfv1dz1vsgchjlpknkg6irbvkfafx")))) + (build-system r-build-system) + (propagated-inputs + `(("r-future" ,r-future) + ("r-globals" ,r-globals) + ("r-purrr" ,r-purrr) + ("r-rlang" ,r-rlang))) + (home-page "https://github.com/DavisVaughan/furrr") + (synopsis "Apply mapping functions in parallel using futures") + (description + "This package provides implementations of the family of @code{map()} +functions from the @code{purrr} package that can be resolved using any +@code{future}-supported backend, e.g. parallel on the local machine or +distributed on a compute cluster.") + (license license:lgpl2.1+))) + (define-public r-abjutils (package (name "r-abjutils") - (version "0.2.1") + (version "0.2.3") (source (origin (method url-fetch) (uri (cran-uri "abjutils" version)) (sha256 - (base32 "0qrsc4if7aif73qp95lw6b5986c2r0jn7m39123zij8k15vc935b")))) + (base32 "0n4zps65y3zg0gfzlv97w91si52a9izkncirskbkj5x9hk0nhxcv")))) (build-system r-build-system) (propagated-inputs `(("r-devtools" ,r-devtools) ("r-dplyr" ,r-dplyr) + ("r-furrr" ,r-furrr) + ("r-future" ,r-future) ("r-glue" ,r-glue) ("r-httr" ,r-httr) ("r-magrittr" ,r-magrittr) - ("r-plyr" ,r-plyr) ("r-progress" ,r-progress) ("r-purrr" ,r-purrr) + ("r-readr" ,r-readr) + ("r-rlang" ,r-rlang) ("r-rstudioapi" ,r-rstudioapi) ("r-scales" ,r-scales) ("r-stringi" ,r-stringi) @@ -7110,21 +7167,95 @@ replicating the evaluation as many times as specified, and returning the results conveniently wrapped into a data frame.") (license license:gpl2+))) +(define-public r-magick + (package + (name "r-magick") + (version "2.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "magick" version)) + (sha256 + (base32 + "18y465325mhf48x2jn3jz9khwq1z2aj13wfbdkv8k3hln1sd572m")))) + (build-system r-build-system) + (inputs + `(("imagemagick" ,imagemagick) + ("zlib" ,zlib))) + (propagated-inputs + `(("r-curl" ,r-curl) + ("r-magrittr" ,r-magrittr) + ("r-rcpp" ,r-rcpp))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (home-page "https://github.com/ropensci/magick") + (synopsis "Advanced graphics and image-processing in R") + (description + "This package provides bindings to ImageMagick, a comprehensive image +processing library. It supports many common formats (PNG, JPEG, TIFF, PDF, +etc.) and manipulations (rotate, scale, crop, trim, flip, blur, etc). All +operations are vectorized via the Magick++ STL meaning they operate either on +a single frame or a series of frames for working with layers, collages, or +animation. In RStudio, images are automatically previewed when printed to the +console, resulting in an interactive editing environment.") + (license license:expat))) + +(define-public r-survey + (package + (name "r-survey") + (version "3.35-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "survey" version)) + (sha256 + (base32 + "1nv4sdfmidvyjgvp3zvn5iw35bb8w0v7095is2pdy8cckkgdvr8i")))) + (build-system r-build-system) + (propagated-inputs + `(("r-lattice" ,r-lattice) + ("r-matrix" ,r-matrix) + ("r-minqa" ,r-minqa) + ("r-numderiv" ,r-numderiv) + ("r-survival" ,r-survival))) + (home-page "http://r-survey.r-forge.r-project.org/survey/") + (synopsis "Analysis of complex survey samples") + (description + "This package provides tools for the analysis of complex survey samples. +The provided features include: summary statistics, two-sample tests, rank +tests, generalised linear models, cumulative link models, Cox models, +loglinear models, and general maximum pseudolikelihood estimation for +multistage stratified, cluster-sampled, unequally weighted survey samples; +variances by Taylor series linearisation or replicate weights; +post-stratification, calibration, and raking; two-phase subsampling designs; +graphics; PPS sampling without replacement; principal components, and factor +analysis.") + ;; Either version of the GPL. + (license (list license:gpl2 license:gpl3)))) + (define-public r-dvmisc (package (name "r-dvmisc") - (version "1.1.2") + (version "1.1.3") (source (origin (method url-fetch) (uri (cran-uri "dvmisc" version)) (sha256 - (base32 "1dy0yykskwhkql19bhzmbwsgv028afc8jh9yqwbczj6f3vpv31zh")))) + (base32 "0x391pxg5mqgp5xxc8qwhwxky8ds7d9gr9iwmsb12c92kxfk00bv")))) (build-system r-build-system) (propagated-inputs - `(("r-mass" ,r-mass) + `(("r-cubature" ,r-cubature) + ("r-data-table" ,r-data-table) + ("r-dplyr" ,r-dplyr) + ("r-ggplot2" ,r-ggplot2) + ("r-mass" ,r-mass) + ("r-mvtnorm" ,r-mvtnorm) + ("r-pracma" ,r-pracma) + ("r-purrr" ,r-purrr) ("r-rbenchmark" ,r-rbenchmark) - ("r-rcpp" ,r-rcpp))) + ("r-rcpp" ,r-rcpp) + ("r-survey" ,r-survey))) (home-page "https://cran.r-project.org/web/packages/dvmisc/") (synopsis "Faster computation of common statistics and miscellaneous functions") (description @@ -7399,14 +7530,14 @@ packages maintained by Torsten Hothorn.") (define-public r-multcomp (package (name "r-multcomp") - (version "1.4-8") + (version "1.4-10") (source (origin (method url-fetch) (uri (cran-uri "multcomp" version)) (sha256 (base32 - "0fm78g4zjc6ank316qfw977864shmy890znn4fahwc8jjdhpc252")))) + "1kzmdn9jmz5bmhf3wsfr12ljbasmwsgcsfdia52k0bi6q0swdg19")))) (build-system r-build-system) (propagated-inputs `(("r-codetools" ,r-codetools) @@ -7427,18 +7558,19 @@ Hothorn, Westfall, 2010, CRC Press).") (define-public r-emmeans (package (name "r-emmeans") - (version "1.3.2") + (version "1.3.3") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "0mg6y007hfmr601cq4jgxl5ncwbx79kkh7xs2i504m0rinxj8bf5")))) + "1hpal1vq6gryzvgfvv9f328idg0mgjvlfnhaj069dhb7zqfwhzlk")))) (build-system r-build-system) (propagated-inputs `(("r-estimability" ,r-estimability) ("r-mvtnorm" ,r-mvtnorm) + ("r-numderiv" ,r-numderiv) ("r-plyr" ,r-plyr) ("r-xtable" ,r-xtable))) (home-page "https://github.com/rvlenth/emmeans") @@ -7991,23 +8123,27 @@ ways.") (define-public r-summarytools (package (name "r-summarytools") - (version "0.8.8") + (version "0.9.2") (source (origin (method url-fetch) (uri (cran-uri "summarytools" version)) (sha256 (base32 - "0z836m6ib9bznwcawn6xf8gck05ydxwi3bx4jbrbyqql4kci8zwb")))) + "1q83kii6prqf9z5v8cxj1q2944kx9x7dcxyqix3m883a94dmgivy")))) (build-system r-build-system) (propagated-inputs - `(("r-htmltools" ,r-htmltools) + `(("r-checkmate" ,r-checkmate) + ("r-dplyr" ,r-dplyr) + ("r-htmltools" ,r-htmltools) ("r-lubridate" ,r-lubridate) + ("r-magick" ,r-magick) ("r-matrixstats" ,r-matrixstats) ("r-pander" ,r-pander) ("r-pryr" ,r-pryr) ("r-rapportools" ,r-rapportools) - ("r-rcurl" ,r-rcurl))) + ("r-rcurl" ,r-rcurl) + ("r-tidyr" ,r-tidyr))) (home-page "https://github.com/dcomtois/summarytools") (synopsis "Tools to quickly and neatly summarize data") (description @@ -8164,14 +8300,14 @@ analysing multivariate abundance data in community ecology.") (define-public r-afex (package (name "r-afex") - (version "0.22-1") + (version "0.23-0") (source (origin (method url-fetch) (uri (cran-uri "afex" version)) (sha256 (base32 - "065wbxljl77zqvc2c4gpfpfyc6mbnnrf24q399q9bxmrz3sapj8n")))) + "0yv4s7461swn0116y4wq9v139p1br5rr6hhnq1cmkbvybmwj2vp7")))) (build-system r-build-system) (propagated-inputs `(("r-car" ,r-car) @@ -8189,14 +8325,14 @@ experiments using ANOVA or mixed models.") (define-public r-lmertest (package (name "r-lmertest") - (version "3.0-1") + (version "3.1-0") (source (origin (method url-fetch) (uri (cran-uri "lmerTest" version)) (sha256 (base32 - "0pia69sc8bn37mkiprdf91iilziqb865f94k6x6c26i33fg7rq4m")))) + "1nkz8cmxa5yb8q4i65bmhnn5pd4bhwcyjplyscynb24z3f64xp9b")))) (properties `((upstream-name . "lmerTest"))) (build-system r-build-system) (propagated-inputs @@ -8436,14 +8572,14 @@ isosurfaces.") (define-public r-ks (package (name "r-ks") - (version "1.11.3") + (version "1.11.4") (source (origin (method url-fetch) (uri (cran-uri "ks" version)) (sha256 (base32 - "0z749c3xzpf6n0g7xcfplrhap1di8k7kcfr7vigh95ywnigyhs8d")))) + "0d5i8458s8ri9pcx2jm003z1ajk7ha3pmw1sr6lgn6a8d7wgmvqb")))) (build-system r-build-system) (propagated-inputs `(("r-fnn" ,r-fnn) @@ -8452,7 +8588,6 @@ isosurfaces.") ("r-matrix" ,r-matrix) ("r-mclust" ,r-mclust) ("r-mgcv" ,r-mgcv) - ("r-misc3d" ,r-misc3d) ("r-multicool" ,r-multicool) ("r-mvtnorm" ,r-mvtnorm))) (home-page "http://www.mvstat.net/tduong/") @@ -8820,14 +8955,14 @@ maps.") (define-public r-tidytree (package (name "r-tidytree") - (version "0.2.1") + (version "0.2.4") (source (origin (method url-fetch) (uri (cran-uri "tidytree" version)) (sha256 (base32 - "1sx69wvlp7k761cmglrzq2jxkm2iq27x6bhhdcisj62wryj96wb2")))) + "04bznlfs617plv258nmsyq2pywnijcnzy2pbn5b2fgjk2xqkp29w")))) (build-system r-build-system) (propagated-inputs `(("r-ape" ,r-ape) @@ -9538,17 +9673,18 @@ and manipulating sets of ontological terms.") (define-public r-bigrquery (package (name "r-bigrquery") - (version "1.0.0") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "bigrquery" version)) (sha256 (base32 - "0z7wsqxla1pg2454l35kkfaz2s9hppwvpz1pds286ddldbbmyzis")))) + "0h2nzyn1w0padpl61l467j7vlkc2wair7sh6p26p94z4zfsnv0i1")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) + ("r-bit64" ,r-bit64) ("r-curl" ,r-curl) ("r-dbi" ,r-dbi) ("r-glue" ,r-glue) @@ -9568,14 +9704,14 @@ and manipulating sets of ontological terms.") (define-public r-gmp (package (name "r-gmp") - (version "0.5-13.2") + (version "0.5-13.4") (source (origin (method url-fetch) (uri (cran-uri "gmp" version)) (sha256 (base32 - "1xd6jjra4niqv1kps91y348lwgvy73p2faxaia4gfzdnrpw7wsxf")))) + "15jifzwbzqcnq2apzvsylkx4k9lillkgblm4wf4wb7y31ys0amph")))) (build-system r-build-system) (arguments '(#:phases @@ -10385,14 +10521,14 @@ model with finite state space using the Aalen-Johansen estimator.") (define-public r-epi (package (name "r-epi") - (version "2.32") + (version "2.35") (source (origin (method url-fetch) (uri (cran-uri "Epi" version)) (sha256 (base32 - "14n24xlm7pwdc54w2hlpjhfal1zpzm87rv3rjfckiz47d3w7dwqm")))) + "1z3959761ryv54y6vsrxxvhrwzz50xrxn55pqh5y7lrxh91zdsvl")))) (properties `((upstream-name . "Epi"))) (build-system r-build-system) (propagated-inputs @@ -10444,20 +10580,21 @@ regression coefficients can be conducted via jackknifing.") (define-public r-huge (package (name "r-huge") - (version "1.2.7") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "huge" version)) (sha256 (base32 - "134d951x42vy9dcmf155fbvik2934nh6qm2w5jlx3x2c6cf7faq4")))) + "18psr7arynax38hcc5y9dxskhsg4a5zjw3hjbgf96zy59wdib5ch")))) (build-system r-build-system) (propagated-inputs `(("r-igraph" ,r-igraph) - ("r-lattice" ,r-lattice) ("r-mass" ,r-mass) - ("r-matrix" ,r-matrix))) + ("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-rcppeigen" ,r-rcppeigen))) (home-page "https://cran.r-project.org/web/packages/huge") (synopsis "High-dimensional undirected graph estimation") (description @@ -10599,14 +10736,14 @@ the local machine to, say, distributed processing on a remote compute cluster.") (define-public r-future-apply (package (name "r-future-apply") - (version "1.1.0") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "future.apply" version)) (sha256 (base32 - "0b6v9rxvnnz13sydbgkapw71hx98fwdczjchgqnspjmq2340kdc0")))) + "00ma43ma3byrf9vfqqn9g8sn18c71ryhk7lpza5h7817f1kibw1h")))) (properties `((upstream-name . "future.apply"))) (build-system r-build-system) (propagated-inputs |