diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 338 |
1 files changed, 199 insertions, 139 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8754f83f72..4bc94b990d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -290,14 +290,13 @@ single step.") (define-public r-rvest (package (name "r-rvest") - (version "0.3.4") + (version "0.3.5") (source (origin (method url-fetch) (uri (cran-uri "rvest" version)) (sha256 - (base32 - "0ji5lk8g1gbv4d9c4jg1fg6rgsqrrwkm05j1id7drdw9kqdifgj1")))) + (base32 "0r0a5jic09xw5pk0x42pr99r3zab5m9s4x85ymx1sl769jz42zqf")))) (build-system r-build-system) (propagated-inputs `(("r-httr" ,r-httr) @@ -546,13 +545,13 @@ directory.") (define-public r-htmlwidgets (package (name "r-htmlwidgets") - (version "1.5") + (version "1.5.1") (source (origin (method url-fetch) (uri (cran-uri "htmlwidgets" version)) (sha256 (base32 - "1h2sj5h9vcssb73nz63gmw5bajs73m9q807fsypvr621gb1s124i")))) + "10fp306l1nybkah6jrlrqwwdb6zvklbddp8i3w9v9naj8la5jbnl")))) (build-system r-build-system) (propagated-inputs `(("r-htmltools" ,r-htmltools) @@ -1296,14 +1295,14 @@ including functions for geolocation and routing.") (define-public r-haven (package (name "r-haven") - (version "2.1.1") + (version "2.2.0") (source (origin (method url-fetch) (uri (cran-uri "haven" version)) (sha256 (base32 - "12h64r2v2451igyl7v4w2kg0hzw9rnanph0m7smffq29ybkv9g4h")))) + "0g9d6mxqmrw2zdms78jpx2sx73pczlyy771v1h5hmxqz9sqyk7hr")))) (build-system r-build-system) (inputs `(("zlib" ,zlib))) @@ -1311,8 +1310,10 @@ including functions for geolocation and routing.") `(("r-forcats" ,r-forcats) ("r-hms" ,r-hms) ("r-rcpp" ,r-rcpp) + ("r-rlang" ,r-rlang) ("r-readr" ,r-readr) - ("r-tibble" ,r-tibble))) + ("r-tibble" ,r-tibble) + ("r-tidyselect" ,r-tidyselect))) (home-page "https://haven.tidyverse.org") (synopsis "Import and Export 'SPSS', 'Stata' and 'SAS' Files") (description @@ -1531,14 +1532,13 @@ processes. Most of its code is based on the @code{psutil} Python package.") (define-public r-pkgbuild (package (name "r-pkgbuild") - (version "1.0.5") + (version "1.0.6") (source (origin (method url-fetch) (uri (cran-uri "pkgbuild" version)) (sha256 - (base32 - "0y4i85axwajrk67h3w6fiqfm6wxmhn3dr240w5l2nvqg3ahpxc8q")))) + (base32 "0xnlz6ivhkbmncg9hfw5p69lm4rjy3wn5lyxmygxyf4rrfnnqwxx")))) (build-system r-build-system) (propagated-inputs `(("r-callr" ,r-callr) @@ -1587,13 +1587,13 @@ you to rapidly iterate while developing a package.") (define-public r-rcpp (package (name "r-rcpp") - (version "1.0.2") + (version "1.0.3") (source (origin (method url-fetch) (uri (cran-uri "Rcpp" version)) (sha256 - (base32 "170jlmjrs92z5qdv58badhxycjvfjpqwwpic7rm13pc9zkb3i4xd")))) + (base32 "03h3zyjq948y0hrrs95lfk4zgx6wfrg64hjlrfrzf5na7bfh0d9b")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) ; for vignettes @@ -2057,14 +2057,13 @@ most popular ones.") (define-public r-sp (package (name "r-sp") - (version "1.3-1") + (version "1.3-2") (source (origin (method url-fetch) (uri (cran-uri "sp" version)) (sha256 - (base32 - "17xm1ig80p9wc860hm3bgishz6lj9fxgwqidj7rkbk4ap99qp62p")))) + (base32 "0kpjsqh3lzqp1m0avsvm54lazlgwfx3hyf0av3mvbyslsanj42ll")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice))) @@ -2585,14 +2584,14 @@ regression using Kernel Ridge Regression.") (define-public r-prodlim (package (name "r-prodlim") - (version "2018.04.18") + (version "2019.10.13") (source (origin (method url-fetch) (uri (cran-uri "prodlim" version)) (sha256 (base32 - "1aslq87sqwikh8chxc378r38146y7kv79zz0kcq3j93ivx7va8jb")))) + "0rsyfpz667y5cijmq33l318mrdw8r340khp72gcg8n490b1g0176")))) (build-system r-build-system) (propagated-inputs `(("r-kernsmooth" ,r-kernsmooth) @@ -2786,14 +2785,14 @@ Delaunay triangulation and convex hull computation.") (define-public r-ddalpha (package (name "r-ddalpha") - (version "1.3.9") + (version "1.3.10") (source (origin (method url-fetch) (uri (cran-uri "ddalpha" version)) (sha256 (base32 - "1vzs0cvl6xw3h9i00rg3hs02xwgxcnh8326y10kxmhs3qq4m7nb2")))) + "1064g7y8d7kmvd5kjc2m48yvidmh2ci1y0xgil3pcx4ix6mf0ljz")))) (build-system r-build-system) (propagated-inputs `(("r-bh" ,r-bh) @@ -3089,14 +3088,13 @@ color labels, layout, etc.") (define-public r-stringdist (package (name "r-stringdist") - (version "0.9.5.2") + (version "0.9.5.5") (source (origin (method url-fetch) (uri (cran-uri "stringdist" version)) (sha256 - (base32 - "0nw8c317qkfq63pr0prl0hx522ddfq4cbgixb5r4pq3fxk9z303l")))) + (base32 "1dqfakclzaf878x7mhwmqrcpcql2h9cv19fz5f3ygpajf3si5kqi")))) (build-system r-build-system) (home-page "https://github.com/markvanderloo/stringdist") (synopsis "Approximate string matching and string distance functions") @@ -3164,14 +3162,14 @@ Laplace approximation and adaptive Gauss-Hermite quadrature.") (define-public r-jomo (package (name "r-jomo") - (version "2.6-9") + (version "2.6-10") (source (origin (method url-fetch) (uri (cran-uri "jomo" version)) (sha256 (base32 - "16ychdhhv8cii8zrdfdf5gzgnvmfaq573bmi00xqdf323q3lf3xr")))) + "1k9l4290g350zbw1pjs871q9bxj3j2h1dilxpp06v4wy4n7d8qs0")))) (build-system r-build-system) (propagated-inputs `(("r-lme4" ,r-lme4) @@ -3887,13 +3885,13 @@ iVAT).") (define-public r-xfun (package (name "r-xfun") - (version "0.10") + (version "0.11") (source (origin (method url-fetch) (uri (cran-uri "xfun" version)) (sha256 - (base32 "065ygh046ah43p5aqyrkv2vkxcnvnb4j7blfdygysg6hmqzp4pbv")))) + (base32 "0dncw6bqkal7nyarrrrj9arxy0y3nkdzmrbibcjh84m1cxd4phiw")))) (build-system r-build-system) (home-page "https://github.com/yihui/xfun") (synopsis "Miscellaneous functions") @@ -4031,14 +4029,14 @@ terminals.") (define-public r-tinytex (package (name "r-tinytex") - (version "0.16") + (version "0.17") (source (origin (method url-fetch) (uri (cran-uri "tinytex" version)) (sha256 (base32 - "1dadq9l0527v038b1k1dyfs0dklsgxnmplls3qhqprfgskif8mga")))) + "0mgxrbj4gam2gvxfk26nq820vsfjggj81m2l7j9m8vp361k15r0w")))) (build-system r-build-system) (propagated-inputs `(("r-xfun" ,r-xfun))) @@ -5267,17 +5265,19 @@ additional external tools on any platform.") (define-public r-openxlsx (package (name "r-openxlsx") - (version "4.1.0.1") + (version "4.1.3") (source (origin (method url-fetch) (uri (cran-uri "openxlsx" version)) (sha256 (base32 - "1lflygpi1z4rlb1c6g6wsmi334maiiy7jhpg6ph4sw8lpvg12w4b")))) + "087zivh9xdh1kk8zci67ys0m2xq0slzwgnf0jl05yy4gsgb6nmyx")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp) + ("r-rlang" ,r-rlang) + ("r-stringi" ,r-stringi) ("r-zip" ,r-zip))) (home-page "https://github.com/awalker89/openxlsx") (synopsis "Read, write and edit XLSX files") @@ -5468,26 +5468,52 @@ user's computer should be used to save data, caches and logs. It is a port of Python's @url{https://github.com/ActiveState/appdirs,Appdirs} to R.") (license license:expat))) +(define-public r-renv + (package + (name "r-renv") + (version "0.8.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "renv" version)) + (sha256 + (base32 + "0034jlaq7z40q3hcpkjlaff37dpn46kvxvzw4scbwlw4x9q8sx9j")))) + (properties `((upstream-name . "renv"))) + (build-system r-build-system) + (home-page "https://rstudio.github.io/renv") + (synopsis "Project environments") + (description + "This package provides a dependency management toolkit for R. Using +renv, you can create and manage project-local R libraries, save the state of +these libraries to a lockfile, and later restore your library as required. +Together, these tools can help make your projects more isolated, portable, and +reproducible.") + (license license:expat))) + (define-public r-learnr (package (name "r-learnr") - (version "0.9.2.1") + (version "0.10.0") (source (origin (method url-fetch) (uri (cran-uri "learnr" version)) (sha256 (base32 - "0jbk0g6fkw7zs8ykzhsvh9vvz8xmc4v03bqzjsa5mmpxpqan5vx5")))) + "0278q9nbkc4nb0rp930kjrwyidf0v7y38d1s187m4f4bs7ha82k6")))) (build-system r-build-system) (propagated-inputs - `(("r-evaluate" ,r-evaluate) + `(("r-checkmate" ,r-checkmate) + ("r-ellipsis" ,r-ellipsis) + ("r-evaluate" ,r-evaluate) ("r-htmltools" ,r-htmltools) ("r-htmlwidgets" ,r-htmlwidgets) ("r-jsonlite" ,r-jsonlite) ("r-knitr" ,r-knitr) ("r-markdown" ,r-markdown) ("r-rappdirs" ,r-rappdirs) + ("r-renv" ,r-renv) ("r-rmarkdown" ,r-rmarkdown) ("r-rprojroot" ,r-rprojroot) ("r-shiny" ,r-shiny) @@ -5655,14 +5681,14 @@ and adds the annotation to the plot.") (define-public r-ggpubr (package (name "r-ggpubr") - (version "0.2.3") + (version "0.2.4") (source (origin (method url-fetch) (uri (cran-uri "ggpubr" version)) (sha256 (base32 - "0i81mmz4qn9yzcgfa6dhkcrx4ddlflkm2c3b40isc8all43rm8rn")))) + "0ln1gh3zlfx5s7zqcpvfdiksq74v1pma5kwkhc6r0riqnjjd19pf")))) (build-system r-build-system) (propagated-inputs `(("r-cowplot" ,r-cowplot) @@ -5937,14 +5963,14 @@ functions.") (define-public r-rjags (package (name "r-rjags") - (version "4-9") + (version "4-10") (source (origin (method url-fetch) (uri (cran-uri "rjags" version)) (sha256 (base32 - "1vrmxxfnia2mkmfkp5yaq5qrlh4xg3ggab6fnj14mrp1231wb91a")))) + "1nhaim84ww8fd6m8xlpmngqcnp2qpql29ahc38366fxja3ghngmx")))) (build-system r-build-system) (propagated-inputs `(("r-coda" ,r-coda))) @@ -5990,14 +6016,14 @@ references and Rd files.") (define-public r-officer (package (name "r-officer") - (version "0.3.5") + (version "0.3.6") (source (origin (method url-fetch) (uri (cran-uri "officer" version)) (sha256 (base32 - "005kaxjhr40shpav2pg7s7gj8f49579r7rbgwlncbwv16nn0rbbg")))) + "1i6jmnbkx7gd0qyf6akhizmxp7y1dh3h7a886mcbmrzka9d60zh4")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) @@ -6177,14 +6203,14 @@ other add-on packages.") (define-public r-insight (package (name "r-insight") - (version "0.5.0") + (version "0.6.0") (source (origin (method url-fetch) (uri (cran-uri "insight" version)) (sha256 (base32 - "0lrh2l9n2zd9n3zzknsxz6nlasnrayx3bplxlz7m616g56gr5nfp")))) + "1izqh4j0gzyk25cga67gs0i6rl0j471h5y2c3y1maz79r32fs7fd")))) (build-system r-build-system) (home-page "https://easystats.github.io/insight/") (synopsis "Easy access to model information for various model objects") @@ -6310,14 +6336,14 @@ functions.") (define-public r-flextable (package (name "r-flextable") - (version "0.5.5") + (version "0.5.6") (source (origin (method url-fetch) (uri (cran-uri "flextable" version)) (sha256 (base32 - "1q6x9mfk5gikqjbbra1dn8hs1rq5ws99jdjav3m113gx9f2j5yxh")))) + "1f869f2dfqkzhf6yix7xcbs8rn1nwq3sg623h74zg6h1pl6px66w")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) @@ -6528,25 +6554,51 @@ comparisons to Cohen's d are offered based on Huberty & Lowman's Percentage of Group (Non-)Overlap considerations.") (license license:gpl2))) +(define-public r-deriv + (package + (name "r-deriv") + (version "3.9.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "Deriv" version)) + (sha256 + (base32 + "0hlqm216bg3l79gq6m0am0xz6vd3l2hgjnjm6lym3mkmgkka4kxw")))) + (properties `((upstream-name . "Deriv"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/Deriv") + (synopsis "Symbolic differentiation") + (description + "This package provides an R-based solution for symbolic differentiation. +It admits user-defined functions as well as function substitution in arguments +of functions to be differentiated. Some symbolic simplification is part of +the work.") + (license license:gpl3+))) + (define-public r-doby (package (name "r-doby") - (version "4.6-2") + (version "4.6-3") (source (origin (method url-fetch) (uri (cran-uri "doBy" version)) (sha256 (base32 - "02vbv9nfgywg6lsiialkmfnax5z3rkyb9nr8j9l2cp8xi6ml95mb")))) + "1d0d6pwai1g4i5jls0jm9va29ci5hy92n5957608f3fzi1jwy635")))) (properties `((upstream-name . "doBy"))) (build-system r-build-system) (propagated-inputs - `(("r-dplyr" ,r-dplyr) + `(("r-broom" ,r-broom) + ("r-deriv" ,r-deriv) + ("r-dplyr" ,r-dplyr) ("r-magrittr" ,r-magrittr) ("r-mass" ,r-mass) ("r-matrix" ,r-matrix) - ("r-plyr" ,r-plyr))) + ("r-plyr" ,r-plyr) + ("r-pbkrtest" ,r-pbkrtest) + ("r-tibble" ,r-tibble))) (home-page "http://people.math.aau.dk/~sorenh/software/doBy/") (synopsis "Groupwise statistics, LSmeans, linear contrasts, and utilities") (description @@ -6660,14 +6712,14 @@ bootstrap. Confidence intervals can be computed for (p)AUC or ROC curves.") (define-public r-rootsolve (package (name "r-rootsolve") - (version "1.7") + (version "1.8.1") (source (origin (method url-fetch) (uri (cran-uri "rootSolve" version)) (sha256 (base32 - "08ic6ggcc5dw4nv9xsqkm3vnvswmxyhnqnv1rdjv1h2gy1ivpcq8")))) + "0skrspq7sd7gaq73w91km14v8znc8chncgy64hvjgcng2xw15phx")))) (properties `((upstream-name . "rootSolve"))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -6718,13 +6770,13 @@ the analyzed items.") (define-public r-slam (package (name "r-slam") - (version "0.1-45") + (version "0.1-46") (source (origin (method url-fetch) (uri (cran-uri "slam" version)) (sha256 - (base32 "0xvj8va6xd7zkn3l4a5ad7v62s7xmkz8frq7gpcl3b6vqwckkaw4")))) + (base32 "1ihhbx76miwys35gsbhijriadvrw4f51lc3v45pnn6cvcfd9hr0b")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/slam/") (synopsis "Sparse lightweight arrays and matrices") @@ -6855,13 +6907,13 @@ second male (P2) based on the best fit distribution.") (define-public r-abcrf (package (name "r-abcrf") - (version "1.8") + (version "1.8.1") (source (origin (method url-fetch) (uri (cran-uri "abcrf" version)) (sha256 - (base32 "0r31ki89z8zzcffm0yvd2zw3q96rk6g6fnwwkql902mgajbrha1f")))) + (base32 "1ghbd24yhqy3xhdxas6ccn84nkavqpgldx5ck8kijknc7qjm8k27")))) (build-system r-build-system) (propagated-inputs `(("r-doparallel" ,r-doparallel) @@ -7965,14 +8017,14 @@ Hothorn, Westfall, 2010, CRC Press).") (define-public r-emmeans (package (name "r-emmeans") - (version "1.4.1") + (version "1.4.2") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "1fpawaxnmj67md169a9mzrnnh2d0c973xydfg6hw865933jil9lq")))) + "1sxwbh6sym2shrj7gva8q96ca2csqz3081q4d84avpxz15dfz1z1")))) (build-system r-build-system) (propagated-inputs `(("r-estimability" ,r-estimability) @@ -8198,14 +8250,14 @@ differentiation.") (define-public r-bayestestr (package (name "r-bayestestr") - (version "0.3.0") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "bayestestR" version)) (sha256 (base32 - "0r453zb106hj9w53jjgckxqajjf7shlrgv10gjxsv8if6qybdz5b")))) + "1d3f50rzjzgzclwd6j887dssyhv7hdq7pik9nnlr3w775v3f69zc")))) (properties `((upstream-name . "bayestestR"))) (build-system r-build-system) (propagated-inputs @@ -8223,14 +8275,14 @@ ROPE percentage and pd).") (define-public r-performance (package (name "r-performance") - (version "0.3.0") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "performance" version)) (sha256 (base32 - "13j74ffhx950kacs86ixx84nviq9qlwzr7hjnhkmzw2hspjxq99w")))) + "0lxpmp9smn5r3xvfik36nr608wcpmmximjh0v2sckyvjf7hnb4s0")))) (build-system r-build-system) (propagated-inputs `(("r-bayestestr" ,r-bayestestr) @@ -8250,14 +8302,14 @@ effects models and Bayesian models.") (define-public r-ggeffects (package (name "r-ggeffects") - (version "0.12.0") + (version "0.13.0") (source (origin (method url-fetch) (uri (cran-uri "ggeffects" version)) (sha256 (base32 - "0idfycjk05gyykfp9ibmhxfcjvd01ikh1dl0fb4nqw6znw3ar0xp")))) + "0ryfbaav0k874kbwmhbiv7fan93dmkpaimm1iw5kryjhhs3917lb")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -8266,7 +8318,6 @@ effects models and Bayesian models.") ("r-mass" ,r-mass) ("r-purrr" ,r-purrr) ("r-rlang" ,r-rlang) - ("r-scales" ,r-scales) ("r-sjlabelled" ,r-sjlabelled) ("r-sjmisc" ,r-sjmisc))) (home-page "https://github.com/strengejacke/ggeffects") @@ -8728,21 +8779,20 @@ and related methods.") (define-public r-rcppgsl (package (name "r-rcppgsl") - (version "0.3.6") + (version "0.3.7") (source (origin (method url-fetch) (uri (cran-uri "RcppGSL" version)) (sha256 - (base32 - "16pdapq31729db53agnb48jkvdm97167n3bigy5zazc3q3isis1m")))) + (base32 "0cnw2k7cfqrm79r6j283aybflxig80x4n4rjkfp2317wf10mrsa5")))) (properties `((upstream-name . "RcppGSL"))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp) ("gsl" ,gsl))) (native-inputs - `(("r-knitr" ,r-knitr))) ; for vignettes + `(("r-knitr" ,r-knitr))) ; for vignettes (home-page "https://cran.r-project.org/web/packages/RcppGSL/") (synopsis "Rcpp integration for GSL vectors and matrices") (description @@ -8898,14 +8948,14 @@ address a bug.") (define-public r-rcppannoy (package (name "r-rcppannoy") - (version "0.0.13") + (version "0.0.14") (source (origin (method url-fetch) (uri (cran-uri "RcppAnnoy" version)) (sha256 (base32 - "1jibp9b07c5ka1kif0nl7f168hxfvysj32wnmnxg85l663hmvm8j")))) + "1wiigx5g5788j6lyc3f6bs1rsvc4alyc3052g35hxl1giinxmhn4")))) (properties `((upstream-name . "RcppAnnoy"))) (build-system r-build-system) (propagated-inputs @@ -8970,14 +9020,14 @@ other values.") (define-public r-ncdf4 (package (name "r-ncdf4") - (version "1.16.1") + (version "1.17") (source (origin (method url-fetch) (uri (cran-uri "ncdf4" version)) (sha256 (base32 - "083sb24anyd4sw0il3x07pqn9rbx5y5ayqass6mz8x443rnjvphd")))) + "1xls44ln2zjrrlimxl8v4bk2ni3g45c9j0gxdnjx31rikmrc95fv")))) (build-system r-build-system) (inputs `(("netcdf" ,netcdf) @@ -8997,14 +9047,14 @@ netCDF files.") (define-public r-biocmanager (package (name "r-biocmanager") - (version "1.30.4") + (version "1.30.9") (source (origin (method url-fetch) (uri (cran-uri "BiocManager" version)) (sha256 (base32 - "0kxs76pixk1d2lpvkyrq6nnvv1rqf55ph5f7igkadyyqirf3y2ah")))) + "1l9b2mr99nhpvk1wkd93397i0d6z4vvbq3zm8dk86gb1pfci26sx")))) (properties `((upstream-name . "BiocManager"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/BiocManager/") @@ -9100,14 +9150,13 @@ isosurfaces.") (define-public r-ks (package (name "r-ks") - (version "1.11.5") + (version "1.11.6") (source (origin (method url-fetch) (uri (cran-uri "ks" version)) (sha256 - (base32 - "06ymx244yknmpl6935l4pafqbm4gcbpnhqg7rinql6rrfr9mcrag")))) + (base32 "0hcccjfqnzdxkmnfzq8c5a7yhc138azwyl7rp29d1vl1jawwrwfq")))) (build-system r-build-system) (propagated-inputs `(("r-fnn" ,r-fnn) @@ -9532,14 +9581,13 @@ maps.") (define-public r-tidytree (package (name "r-tidytree") - (version "0.2.8") + (version "0.2.9") (source (origin (method url-fetch) (uri (cran-uri "tidytree" version)) (sha256 - (base32 - "1hkddl8kj1g01dy7xiracx81f6b405b3ga2qp4wlrl552b9xxpby")))) + (base32 "1l9rk71dzlwg8736l0g4rdlq3pghxkfzmlxyln8y4bxx7ym51i6g")))) (build-system r-build-system) (propagated-inputs `(("r-ape" ,r-ape) @@ -9560,13 +9608,13 @@ manipulate tree data.") (define-public r-rvcheck (package (name "r-rvcheck") - (version "0.1.5") + (version "0.1.6") (source (origin (method url-fetch) (uri (cran-uri "rvcheck" version)) (sha256 - (base32 "15222q3sglq0mad5q806p99fhrb96qizmpqw35fa1rb148f95paf")))) + (base32 "11n3qxapxcqsa0771s9q8n95kxmfyflya1d6wz4mm0lz0i6q55ia")))) (build-system r-build-system) (propagated-inputs `(("r-biocmanager" ,r-biocmanager) @@ -9964,14 +10012,13 @@ creating color scales and calculating color distances.") (define-public r-ore (package (name "r-ore") - (version "1.6.2") + (version "1.6.3") (source (origin (method url-fetch) (uri (cran-uri "ore" version)) (sha256 - (base32 - "1l1ziljgm5gwjhvjq42wi5vcwbxlaj5dl9w8bhz0wh8vx4ajj07m")))) + (base32 "1vh6w3arrhgkfjjjw7ci91xmz4wpfr3cmwd5zkqch89dgn07skkv")))) (build-system r-build-system) (home-page "https://github.com/jonclayden/ore") (synopsis "R interface to the Onigmo regular expression library") @@ -10216,14 +10263,14 @@ decomposition is shared between datasets.") (define-public r-strucchange (package (name "r-strucchange") - (version "1.5-1") + (version "1.5-2") (source (origin (method url-fetch) (uri (cran-uri "strucchange" version)) (sha256 (base32 - "0cdgvl6kphm2i59bmnppn1y3kv65ml111bk7yzpcx7vv8wh2w3kl")))) + "1y022363a4pp0mnji91sjh1qiyspkh09sybqwj03r9pmwrd7q93x")))) (build-system r-build-system) (propagated-inputs `(("r-sandwich" ,r-sandwich) @@ -10855,14 +10902,13 @@ This makes it a convenient and fast interface to C/C++ and Fortran code.") (define-public r-spam (package (name "r-spam") - (version "2.3-0") + (version "2.4-0") (source (origin (method url-fetch) (uri (cran-uri "spam" version)) (sha256 - (base32 - "194n5mgvyms9ckjqixl3h33apii8h9kqspqg2si9k741k578qb3w")))) + (base32 "0xb7a0x1i93kzijr518m9plzmg8s3mxh5anwfx9xrkg5ipldvz10")))) (build-system r-build-system) (propagated-inputs `(("r-dotcall64" ,r-dotcall64))) @@ -10885,21 +10931,20 @@ Differences with other sparse matrix packages are: (define-public r-fields (package (name "r-fields") - (version "9.8-6") + (version "10.0") (source (origin (method url-fetch) (uri (cran-uri "fields" version)) (sha256 - (base32 - "07x95vk1idjfzi5ikn0ijal754mssdmgr1p4nswmx9w3i5ndcqaz")))) + (base32 "173zm5vr236ydiq0v27qy0l3x7h9fc7jly38iakg77j26i0a01il")))) (build-system r-build-system) (propagated-inputs `(("r-maps" ,r-maps) ("r-spam" ,r-spam))) (native-inputs `(("gfortran" ,gfortran))) - (home-page "http://www.image.ucar.edu/fields") + (home-page "https://www.image.ucar.edu/fields") (synopsis "Tools for spatial data") (description "This is a package for curve, surface and function fitting with an @@ -11079,14 +11124,14 @@ putative directions).") (define-public r-rbamtools (package (name "r-rbamtools") - (version "2.16.11.2") + (version "2.16.17") (source (origin (method url-fetch) (uri (cran-uri "rbamtools" version)) (sha256 (base32 - "0gzkb1xyrkriv45wq8gv7qfwjslnvwkfkk5jjc4wg5kmm0ydpdzj")))) + "0qj37ljdva3v29s01dkrbg31mcfzy3bl145cp40d54v4h9xhcghc")))) (build-system r-build-system) (inputs `(("zlib" ,zlib))) (propagated-inputs @@ -11128,14 +11173,13 @@ But it can also be used to do data analysis for small scale data sets.") (define-public r-cmprsk (package (name "r-cmprsk") - (version "2.2-8") + (version "2.2-9") (source (origin (method url-fetch) (uri (cran-uri "cmprsk" version)) (sha256 - (base32 - "1nacbzx950ygaqgnj0949skhwpzar5i3xlscd44jsimk2gsppx6z")))) + (base32 "0xhgfg5b4i9skkaxp7gzkafgg5bqs5q1rp4hpw2jjmykg2nifn99")))) (build-system r-build-system) (propagated-inputs `(("r-survival" ,r-survival))) @@ -11240,14 +11284,13 @@ regression coefficients can be conducted via jackknifing.") (define-public r-huge (package (name "r-huge") - (version "1.3.3") + (version "1.3.4") (source (origin (method url-fetch) (uri (cran-uri "huge" version)) (sha256 - (base32 - "18f8w4hdp9fdi2k5ip6fnrn5z47w4ybgxs2m6a7jdvd2v4wfdr69")))) + (base32 "07n3j1va2z4v30rj22cww72khgzbz2xsp0yc0qswlrwyxi4my5i3")))) (build-system r-build-system) (propagated-inputs `(("r-igraph" ,r-igraph) @@ -11364,14 +11407,14 @@ them in distributed compute environments.") (define-public r-future (package (name "r-future") - (version "1.14.0") + (version "1.15.0") (source (origin (method url-fetch) (uri (cran-uri "future" version)) (sha256 (base32 - "1jyv2wlmpfqbk3hw269h4xg36na3wh1kd1lxmwdb40bsv4850lqa")))) + "1cbp7agb9lipjxsh7xm1yphh8a4hrjy7wrbkvhsxn1swh0c4s3b7")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -11632,14 +11675,13 @@ identifying outliers.") (define-public r-bayesm (package (name "r-bayesm") - (version "3.1-3") + (version "3.1-4") (source (origin (method url-fetch) (uri (cran-uri "bayesm" version)) (sha256 - (base32 - "041ach2f2vrqzd5kz17v7wmkjz6z8cjjihpk4qvczm4cr9z85r2i")))) + (base32 "154glks7rsjkza0sfi1kj7wj727py9sl1ba6sswflwmwc9n226q6")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp) @@ -11714,18 +11756,17 @@ users of rARPACK are advised to switch to the RSpectra package.") (define-public r-compositions (package (name "r-compositions") - (version "1.40-2") + (version "1.40-3") (source (origin (method url-fetch) (uri (cran-uri "compositions" version)) (sha256 (base32 - "12mp05yi7jkdqg9iwh6bc9sx6sdxagcnrirznxy9hq8502p7238i")))) + "103hbmibrf1n333pn4xpll1gqqsv4szms0n5gdq7zak31aar0bg4")))) (build-system r-build-system) (propagated-inputs `(("r-bayesm" ,r-bayesm) - ("r-energy" ,r-energy) ("r-robustbase" ,r-robustbase) ("r-tensora" ,r-tensora))) (home-page "http://www.stat.boogaart.de/compositions") @@ -12534,21 +12575,43 @@ The bedr package's API enhances access to these tools as well as offers additional utilities for genomic regions processing.") (license license:gpl2))) +(define-public r-sets + (package + (name "r-sets") + (version "1.0-18") + (source + (origin + (method url-fetch) + (uri (cran-uri "sets" version)) + (sha256 + (base32 + "16v7650p47khqrbbw0z98llmwmmhswqmhri0n7nrfhdqwmby1lbl")))) + (properties `((upstream-name . "sets"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/sets") + (synopsis "Sets, generalized sets, customizable sets and intervals") + (description + "This package provides data structures and basic operations for ordinary +sets, generalizations such as fuzzy sets, multisets, and fuzzy multisets, +customizable sets, and intervals.") + (license license:gpl2))) + (define-public r-partitions (package (name "r-partitions") - (version "1.9-19") + (version "1.9-22") (source (origin (method url-fetch) (uri (cran-uri "partitions" version)) (sha256 (base32 - "1pklfnjdc094c8nzkqcdvqzdh8v3p5n8jbg4pf9678iw648saiyx")))) + "1qqy4df28wy4q0g572azrj171jlhvrnzbh7x0wr2g7v6gr20y0ns")))) (build-system r-build-system) (propagated-inputs `(("r-gmp" ,r-gmp) - ("r-polynom" ,r-polynom))) + ("r-polynom" ,r-polynom) + ("r-sets" ,r-sets))) (home-page "https://cran.r-project.org/web/packages/partitions") (synopsis "Additive partitions of integers") (description @@ -12701,14 +12764,14 @@ utilities for sequence data management under the ACNUC system.") (define-public r-units (package (name "r-units") - (version "0.6-4") + (version "0.6-5") (source (origin (method url-fetch) (uri (cran-uri "units" version)) (sha256 (base32 - "1jz0mzd78sdfxkhqw041ji50hmhjk2ha55i31yjvz35nsw30lwi5")))) + "02nls8m0r1r7kljs4x35naz3szq62hyqyd5vracf1xwi1kz5kdsh")))) (build-system r-build-system) (inputs `(("udunits" ,udunits))) @@ -12727,14 +12790,14 @@ classes.") (define-public r-classint (package (name "r-classint") - (version "0.4-1") + (version "0.4-2") (source (origin (method url-fetch) (uri (cran-uri "classInt" version)) (sha256 (base32 - "00q1bpgblrldckn1rk166q1b0hgap2sjjyfmfcyh6ydk6y73ziir")))) + "0w980hrw8sgfdfyd5dsimalq7gwhvqm7507abk7k363pvgks23dv")))) (properties `((upstream-name . "classInt"))) (build-system r-build-system) (propagated-inputs @@ -13041,13 +13104,13 @@ either PDF/EPS files.") (define-public r-polspline (package (name "r-polspline") - (version "1.1.16") + (version "1.1.17") (source (origin (method url-fetch) (uri (cran-uri "polspline" version)) (sha256 - (base32 "0d49h7if8h6d784nsnqqxakg19kvl8cmz8k53901m2h0c0amlfxa")))) + (base32 "0c7fnxpqpy3hibiim4yib6l6bq363s97wwvllxp4lp8h06fjcyyn")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) (home-page "https://cran.r-project.org/web/packages/polspline/") @@ -13297,13 +13360,13 @@ SELECT or UPDATE queries to an end-point.") (define-public r-bookdown (package (name "r-bookdown") - (version "0.14") + (version "0.15") (source (origin (method url-fetch) (uri (cran-uri "bookdown" version)) (sha256 (base32 - "1jiq2d292y0l3f4npyfzfpnmb0sqxsl212kkjfbjg5301h0na762")))) + "0pgkabaqsckaz8z1nlza84jp172jyzv17kx5dily43jfx5psy2ap")))) (build-system r-build-system) (propagated-inputs `(("r-htmltools" ,r-htmltools) @@ -13382,14 +13445,13 @@ data manipulation and visualization.") (define-public r-kernlab (package (name "r-kernlab") - (version "0.9-27") + (version "0.9-29") (source (origin (method url-fetch) (uri (cran-uri "kernlab" version)) (sha256 - (base32 - "1m0xqf6gyvwayz7w3c83y32ayvnlz0jicj8ijk808zq9sh7dbbgn")))) + (base32 "0vqhndl4zm7pvkfvq0f6i9cbrm7pij6kmdp7d7w39pa100x6knn3")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/kernlab") (synopsis "Kernel-based machine learning tools") @@ -13745,16 +13807,15 @@ consists of @code{grid} grobs and viewports that can then be manipulated with (define-public r-farver (package (name "r-farver") - (version "1.1.0") + (version "2.0.1") (source (origin (method url-fetch) (uri (cran-uri "farver" version)) (sha256 (base32 - "1dllgx121al374gyp9pjv1m8ip4imm8zhbgyh1970dsz2c4z71i0")))) + "0aq1hk561pz3s3lpay1adwsihha6mxp7zbj4n1m6307g34awlhhn")))) (build-system r-build-system) - (propagated-inputs `(("r-rcpp" ,r-rcpp))) (home-page "https://github.com/thomasp85/farver") (synopsis "Vectorized color conversion and comparison") (description @@ -14071,14 +14132,14 @@ discriminant analysis for the purpose of classifying high dimensional data.") (define-public r-ggvis (package (name "r-ggvis") - (version "0.4.4") + (version "0.4.5") (source (origin (method url-fetch) (uri (cran-uri "ggvis" version)) (sha256 (base32 - "1bxggjr2313kfy895j0fvrv4bg7yh2z87907lk48i1kn5c9flchk")))) + "091i9f17912j8qcyxppjgwzjnyqj7769ixs9d2gjg6f2clskqdw2")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) @@ -14546,14 +14607,14 @@ batch correction, and data correction.") (define-public r-styler (package (name "r-styler") - (version "1.1.1") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "styler" version)) (sha256 (base32 - "1k660lpjvd64gnf6bndcb1cq3qxsvik928kcn6271zmkhja5rgyb")))) + "0rdbz60x8bymis6r6188ia1y0ip3nhf5y363i4cmakr618irjab9")))) (build-system r-build-system) (propagated-inputs `(("r-backports" ,r-backports) @@ -14751,14 +14812,14 @@ engine (Salmon et al., 2011) as provided by the package @code{sitmo}.") (define-public r-dalex (package (name "r-dalex") - (version "0.4.7") + (version "0.4.9") (source (origin (method url-fetch) (uri (cran-uri "DALEX" version)) (sha256 (base32 - "0iiwkf0pfdb90lf1xhv43qd32z3cjmkmf0ly9841n5lldkjazy3h")))) + "1zviaf7530v8w996lbma0vplabrapgwldi7h70pr0439sxaqd421")))) (properties `((upstream-name . "DALEX"))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2))) @@ -14823,14 +14884,14 @@ includes data sets from oceanography.") (define-public r-ggfortify (package (name "r-ggfortify") - (version "0.4.7") + (version "0.4.8") (source (origin (method url-fetch) (uri (cran-uri "ggfortify" version)) (sha256 (base32 - "1wk9j0xg5hj9i1vf62qjiphv8cbsgq7y6baay3pfl3wyb2dwgci0")))) + "191q2z7w0l4v7swjlxs2hjgbjngw2838688s7ygnj0kigsm310f3")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -15301,14 +15362,13 @@ function and interfaces to external frameworks.") (define-public r-covr (package (name "r-covr") - (version "3.3.1") + (version "3.3.2") (source (origin (method url-fetch) (uri (cran-uri "covr" version)) (sha256 - (base32 - "0fvd7v53w11x6kaw61hbml8n1j2ck9l2fv2wvqdsg689xic9rqcs")))) + (base32 "160w0m2d06kdd8dar57lpph39rxx55xwncbpl3b21l7j9drh1s5f")))) (properties `((upstream-name . "covr"))) (build-system r-build-system) (propagated-inputs @@ -15506,13 +15566,13 @@ effect size.") (define-public r-rgdal (package (name "r-rgdal") - (version "1.4-6") + (version "1.4-7") (source (origin (method url-fetch) (uri (cran-uri "rgdal" version)) (sha256 - (base32 "0lj1dax56dxxsj1hindxcvgz169p9dxd0y4wjypbyr01nja8rz4d")))) + (base32 "05rvqy8lr2c3phaylmc4g5761208b0xrmgwn9c4a60x7p251dzjs")))) (properties `((upstream-name . "rgdal"))) (build-system r-build-system) (inputs |