diff options
Diffstat (limited to 'gnu/packages/graph.scm')
| -rw-r--r-- | gnu/packages/graph.scm | 13 |
1 files changed, 12 insertions, 1 deletions
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm index 179ff450ab..115fe20b52 100644 --- a/gnu/packages/graph.scm +++ b/gnu/packages/graph.scm @@ -447,6 +447,15 @@ large networks.") (list #:phases '(modify-phases %standard-phases + (add-after 'unpack 'patch-tests + (lambda _ + ;; The warning message has changed in numpy. + (substitute* "test/test_data.py" + (("\"A sparse matrix was passed, but.*array.\",") + "\"Sparse data was passed, but dense data is required. Use '.toarray()' to convert to a dense numpy array.\",") + ;; anndata prints a warning that causes the test to fail. + (("import warnings" m) + (string-append m "\nwarnings.filterwarnings(\"ignore\")"))))) (replace 'check (lambda* (#:key tests? #:allow-other-keys) (when tests? @@ -552,7 +561,9 @@ algorithm for a number of different methods.") (("suites.append\\(test_docstrings.*") ""))))))) (propagated-inputs (list python-numpy python-scikit-image python-scipy)) - (native-inputs (list python-coverage python-coveralls python-flake8)) + (native-inputs + (list python-coverage python-coveralls python-flake8 + python-pytest)) (home-page "https://github.com/epfl-lts2/pygsp") (synopsis "Graph Signal Processing in Python") (description "The PyGSP is a Python package to ease signal processing on |