diff options
Diffstat (limited to 'gnu/packages/image-processing.scm')
-rw-r--r-- | gnu/packages/image-processing.scm | 199 |
1 files changed, 110 insertions, 89 deletions
diff --git a/gnu/packages/image-processing.scm b/gnu/packages/image-processing.scm index 70c820e76b..41ee0a8824 100644 --- a/gnu/packages/image-processing.scm +++ b/gnu/packages/image-processing.scm @@ -1,7 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2017 John Darrington <jmd@gnu.org> ;;; Copyright © 2017, 2019, 2022 Ricardo Wurmus <rekado@elephly.net> -;;; Copyright © 2014, 2021-2022 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2014, 2021-2023 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2014 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org> ;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr> @@ -242,7 +242,7 @@ licences similar to the Modified BSD licence.")))) (native-inputs (list pkg-config python-wrapper)) - (home-page "http://mia.sourceforge.net") + (home-page "https://mia.sourceforge.net") (synopsis "Toolkit for gray scale medical image analysis") (description "MIA provides a combination of command line tools, plug-ins, and libraries that make it possible run image processing tasks interactively @@ -352,36 +352,59 @@ many popular formats.") (properties `((release-monitoring-url . "https://vtk.org/download/"))) (build-system cmake-build-system) (arguments - '(#:build-type "Release" ;Build without '-g' to save space. - #:configure-flags '(;"-DBUILD_TESTING:BOOL=TRUE" - ; ; not honored - "-DVTK_USE_EXTERNAL=OFF" ;; default - "-DVTK_MODULE_USE_EXTERNAL_VTK_doubleconversion=ON" - "-DVTK_MODULE_USE_EXTERNAL_VTK_eigen=ON" - "-DVTK_MODULE_USE_EXTERNAL_VTK_expat=ON" - "-DVTK_MODULE_USE_EXTERNAL_VTK_freetype=ON" - "-DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON" - "-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON" - "-DVTK_MODULE_USE_EXTERNAL_VTK_hdf5=ON" - "-DVTK_MODULE_USE_EXTERNAL_VTK_jpeg=ON" - "-DVTK_MODULE_USE_EXTERNAL_VTK_jsoncpp=ON" - "-DVTK_MODULE_USE_EXTERNAL_VTK_libharu=ON" - "-DVTK_MODULE_USE_EXTERNAL_VTK_libproj=ON" - "-DVTK_MODULE_USE_EXTERNAL_VTK_libxml2=ON" - "-DVTK_MODULE_USE_EXTERNAL_VTK_lz4=ON" - "-DVTK_MODULE_USE_EXTERNAL_VTK_netcdf=ON" - "-DVTK_MODULE_USE_EXTERNAL_VTK_ogg=ON" - "-DVTK_MODULE_USE_EXTERNAL_VTK_png=ON" - ;"-DVTK_MODULE_USE_EXTERNAL_VTK_pugixml=ON" ; breaks IO/CityGML - "-DVTK_MODULE_USE_EXTERNAL_VTK_sqlite=ON" - "-DVTK_MODULE_USE_EXTERNAL_VTK_theora=ON" - "-DVTK_MODULE_USE_EXTERNAL_VTK_tiff=ON" - "-DVTK_MODULE_USE_EXTERNAL_VTK_zlib=ON" - "-DVTK_MODULE_ENABLE_VTK_RenderingExternal=YES" ; For F3D - "-DVTK_WRAP_PYTHON=ON" - "-DVTK_PYTHON_VERSION:STRING=3" - ) - #:tests? #f)) ;XXX: test data not included + (list #:build-type "Release" ;Build without '-g' to save space. + #:configure-flags + #~'( ;;"-DBUILD_TESTING:BOOL=TRUE" ;not honored + "-DVTK_USE_EXTERNAL=OFF" ;default + "-DVTK_MODULE_USE_EXTERNAL_VTK_doubleconversion=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_eigen=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_expat=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_freetype=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_hdf5=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_jpeg=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_jsoncpp=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_libharu=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_libproj=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_libxml2=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_lz4=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_netcdf=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_ogg=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_png=ON" + ;;"-DVTK_MODULE_USE_EXTERNAL_VTK_pugixml=ON" ;breaks IO/CityGML + "-DVTK_MODULE_USE_EXTERNAL_VTK_sqlite=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_theora=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_tiff=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_zlib=ON" + "-DVTK_MODULE_ENABLE_VTK_RenderingExternal=YES" ;for F3D + "-DVTK_WRAP_PYTHON=ON" + "-DVTK_PYTHON_VERSION:STRING=3" + + "-DVTK_SMP_ENABLE_OPENNMP=ON" + "-DVTK_SMP_ENABLE_TBB=ON" + "-DVTK_USE_MPI=ON" + ) + + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'clear-reference-to-compiler + (lambda _ + (define (choose . files) + (let loop ((files files)) + (if (null? files) + #f + (if (file-exists? (car files)) + (car files) + (loop (cdr files)))))) + + ;; Do not retain a reference to GCC. + (substitute* (choose + "Common/Core/vtkConfigureDeprecated.h.in" ;v9.x + "Common/Core/vtkConfigure.h.in") ;v7.x + (("@CMAKE_CXX_COMPILER@") "c++"))))) + + #:tests? #f)) ;XXX: test data not included (inputs (list double-conversion eigen @@ -402,17 +425,20 @@ many popular formats.") mesa netcdf libpng + libtiff + openmpi proj-7 python ;("pugixml" ,pugixml) sqlite - libtiff xorgproto zlib)) (propagated-inputs ;; VTK's 'VTK-vtk-module-find-packages.cmake' calls - ;; 'find_package(THEORA)', which in turns looks for libogg. - (list libogg)) + ;; 'find_package(THEORA)', which in turns looks for libogg. Likewise for + ;; TBB. + (list libogg + tbb)) (home-page "https://vtk.org/") (synopsis "Libraries for 3D computer graphics") (description @@ -446,7 +472,7 @@ integrates with various databases on GUI toolkits such as Qt and Tk.") ((#:configure-flags flags) ;; Otherwise, the build would fail with: "error: invalid conversion ;; from ‘const char*’ to ‘char*’ [-fpermissive]". - `(cons "-DCMAKE_CXX_FLAGS=-fpermissive" ,flags)) + #~(cons "-DCMAKE_CXX_FLAGS=-fpermissive" #$flags)) ((#:phases phases) #~(modify-phases #$phases (add-after 'unpack 'remove-kernel-version @@ -460,21 +486,18 @@ integrates with various databases on GUI toolkits such as Qt and Tk.") (define-public opencv (package (name "opencv") - (version "4.5.4") + (version "4.7.0") (source (origin (method git-fetch) (uri (git-reference - (url "https://github.com/opencv/opencv") - (commit version))) + (url "https://github.com/opencv/opencv") + (commit version))) (file-name (git-file-name name version)) - (sha256 - (base32 - "0gf2xs3r4s51m20mpf0wdidpk0xzp3m2w6jx72fwldhn0pshlmcj")) (modules '((guix build utils))) (snippet '(begin - ;; Remove external libraries. We have almost all available - ;; in Guix: + ;; Remove external libraries. Almost all of them are + ;; available in Guix. (with-directory-excursion "3rdparty" (for-each delete-file-recursively '("carotene" @@ -498,20 +521,18 @@ integrates with various databases on GUI toolkits such as Qt and Tk.") "tbb" "zlib"))) - ;; Milky icon set is non-free: - (delete-file-recursively "modules/highgui/src/files_Qt/Milky") - - ;; Some jars found: - (for-each delete-file - '("modules/java/test/pure_test/lib/junit-4.11.jar" - "samples/java/sbt/sbt/sbt-launch.jar")))))) + ;; Delete any bundled .jar files. + (for-each delete-file (find-files "." "\\.jar$")))) + (sha256 + (base32 + "0l45v41nns2jmn9nr9fb0yvhqzfjpxjxn75i1c02rsfy3r3lv22v")))) (build-system cmake-build-system) (arguments `(#:configure-flags - (list "-DWITH_ADE=OFF" ;we don't have a package for ade yet + (list "-DWITH_ADE=OFF" ;we don't have a package for ade yet "-DWITH_IPP=OFF" "-DWITH_ITT=OFF" - "-DWITH_CAROTENE=OFF" ; only visible on arm/aarch64 + "-DWITH_CAROTENE=OFF" ; only visible on arm/aarch64 "-DENABLE_PRECOMPILED_HEADERS=OFF" "-DOPENCV_GENERATE_PKGCONFIG=ON" @@ -569,22 +590,20 @@ integrates with various databases on GUI toolkits such as Qt and Tk.") ;; This test fails with "unknown file: Failure" ;; But I couldn't figure out which file was missing: (substitute* "../opencv-contrib/modules/face/test/test_face_align.cpp" - (("(TEST\\(CV_Face_FacemarkKazemi, )(can_detect_landmarks\\).*)" - all pre post) - (string-append pre "DISABLED_" post))) + (("\\bcan_detect_landmarks\\b" all) + (string-append "DISABLED_" all))) - ;; This test fails with a comparison between the expected 396 and + ;; This all fails with a comparison between the expected 396 and ;; the actual 440 in file size. (substitute* "modules/imgcodecs/test/test_exr.impl.hpp" - (("(TEST\\(Imgcodecs_EXR, )(readWrite_32FC1\\).*)" all pre post) - (string-append pre "DISABLED_" post))) + (("\\breadWrite_32FC1\\b" all) + (string-append "DISABLED_" all))) ;; These fail with protobuf parse errors that come from - ;; opencv-extra/testdata. + ;; opencv-extra/alldata. (substitute* "modules/dnn/test/test_layers.cpp" - (("(TEST_P\\(Test_Caffe_layers, )\ -(Accum\\).*|DataAugmentation\\).*|Resample\\).*|Correlation\\).*)" all pre post) - (string-append pre "DISABLED_" post))))) + (("\\b(Accum|DataAugmentation|Resample|Correlation|Interp)\\b" all) + (string-append "DISABLED_" all))))) (add-after 'unpack 'unpack-submodule-sources (lambda* (#:key inputs #:allow-other-keys) (mkdir "../opencv-extra") @@ -596,7 +615,8 @@ integrates with various databases on GUI toolkits such as Qt and Tk.") (add-after 'build 'do-not-install-3rdparty-file (lambda _ (substitute* "cmake_install.cmake" - (("file\\(INSTALL .*source/3rdparty/include/opencl/LICENSE.txt.*") "\n")))) + (("file\\(INSTALL .*3rdparty/include/opencl/LICENSE.txt.*") + "")))) (add-before 'check 'start-xserver (lambda* (#:key inputs #:allow-other-keys) (let ((xorg-server (assoc-ref inputs "xorg-server")) @@ -608,7 +628,7 @@ integrates with various databases on GUI toolkits such as Qt and Tk.") (zero? (system (format #f "~a/bin/Xvfb ~a &" xorg-server disp))))))))) (native-inputs `(("pkg-config" ,pkg-config) - ("xorg-server" ,xorg-server-for-tests) ; For running the tests + ("xorg-server" ,xorg-server-for-tests) ;For running the tests ("opencv-extra" ,(origin (method git-fetch) @@ -617,23 +637,24 @@ integrates with various databases on GUI toolkits such as Qt and Tk.") (commit version))) (file-name (git-file-name "opencv_extra" version)) (sha256 - (base32 "1fg2hxdvphdvagc2fkmhqk7qql9mp7pj2bmp8kmd7vicpr72qk82")))) + (base32 + "0bdg5kwwdimnl2zp4ry5cmfxr9xb7zk2ml59853d90llsqjis47a")))) ("opencv-contrib" ,(origin (method git-fetch) - (uri (git-reference - (url "https://github.com/opencv/opencv_contrib") - (commit version))) + (uri (git-reference (url "https://github.com/opencv/opencv_contrib") + (commit version))) (file-name (git-file-name "opencv_contrib" version)) (sha256 - (base32 "0ga0l4ranp1834gxgp487ll1amvmssa02l2nk5ja5w0rx4d8hh26")))))) + (base32 + "0hbfn835kxh3hwmwvzgdglm2np1ri3z7nfnf60gf4x6ikp89mv4r")))))) (inputs (list ffmpeg-4 gtk+ gtkglext hdf5 ilmbase - imath ;should be propagated by openexr + imath ;should be propagated by openexr jasper libgphoto2 libjpeg-turbo @@ -845,24 +866,24 @@ including 2D color images.") (lambda _ (setenv "HOME" "/tmp") #t))))) (inputs - `(("vips" ,vips) - ("glib" ,glib) - ("libtiff" ,libtiff) - ("gtk+-2" ,gtk+-2) - ("libxml2" ,libxml2) - ("libexif" ,libexif) - ("libjpeg" ,libjpeg-turbo) ;required by vips.pc - ("librsvg" ,librsvg) - ("fftw" ,fftw) - ("libgsf" ,libgsf) - ("imagemagick" ,imagemagick) - ("orc" ,orc) - ("matio" ,matio) - ("lcms" ,lcms) - ("libwebp" ,libwebp) - ("openexr" ,openexr-2) - ("poppler" ,poppler) - ("gsl" ,gsl))) + (list vips + glib + libtiff + gtk+-2 + libxml2 + libexif + libjpeg-turbo ;required by vips.pc + librsvg + fftw + libgsf + imagemagick + orc + matio + lcms + libwebp + openexr-2 + poppler + gsl)) (native-inputs (list flex bison pkg-config)) (home-page "https://github.com/libvips/nip2") |