diff options
Diffstat (limited to 'gnu/packages/machine-learning.scm')
| -rw-r--r-- | gnu/packages/machine-learning.scm | 158 |
1 files changed, 20 insertions, 138 deletions
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index cc69aa3ec1..18a4ac9ef2 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -37,7 +37,6 @@ #:use-module (guix utils) #:use-module (guix download) #:use-module (guix svn-download) - #:use-module (guix build-system asdf) #:use-module (guix build-system cmake) #:use-module (guix build-system gnu) #:use-module (guix build-system ocaml) @@ -63,7 +62,6 @@ #:use-module (gnu packages gstreamer) #:use-module (gnu packages image) #:use-module (gnu packages linux) - #:use-module (gnu packages lisp-xyz) #:use-module (gnu packages maths) #:use-module (gnu packages mpi) #:use-module (gnu packages ocaml) @@ -95,7 +93,7 @@ (source (origin (method git-fetch) (uri (git-reference - (url "https://github.com/libfann/fann.git") + (url "https://github.com/libfann/fann") (commit commit))) (file-name (string-append name "-" version "-checkout")) (sha256 @@ -317,7 +315,7 @@ networks) based on simulation of (stochastic) flow in graphs.") (origin (method git-fetch) (uri (git-reference - (url "https://github.com/fhcrc/mcl.git") + (url "https://github.com/fhcrc/mcl") (commit version))) (file-name (git-file-name name version)) (sha256 @@ -586,7 +584,7 @@ in terms of new algorithms.") (origin (method git-fetch) (uri (git-reference - (url "https://github.com/ReactiveX/RxCpp.git") + (url "https://github.com/ReactiveX/RxCpp") (commit (string-append "v" version)))) (sha256 (base32 "1rdpa3jlc181jd08nk437aar085h28i45s6nzrv65apb3xyyz0ij")) @@ -805,7 +803,7 @@ computing environments.") (origin (method git-fetch) (uri (git-reference - (url "https://github.com/scikit-learn/scikit-learn.git") + (url "https://github.com/scikit-learn/scikit-learn") (commit version))) (file-name (git-file-name name version)) (sha256 @@ -862,7 +860,7 @@ data analysis.") (source (origin (method git-fetch) (uri (git-reference - (url "https://github.com/scikit-learn/scikit-learn.git") + (url "https://github.com/scikit-learn/scikit-learn") (commit version))) (file-name (git-file-name "python-scikit-learn" version)) (sha256 @@ -946,14 +944,14 @@ main intended application of Autograd is gradient-based optimization.") (name "lightgbm") (version "2.0.12") (source (origin - (method url-fetch) - (uri (string-append - "https://github.com/Microsoft/LightGBM/archive/v" - version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/Microsoft/LightGBM") + (commit (string-append "v" version)))) (sha256 (base32 - "132zf0yk0545mg72hyzxm102g3hpb6ixx9hnf8zd2k55gas6cjj1")) - (file-name (string-append name "-" version ".tar.gz")))) + "0jlvyn7k81dzrh9ij3zw576wbgiwmmr26rzpdxjn1dbpc3njpvzi")) + (file-name (git-file-name name version)))) (native-inputs `(("python-pytest" ,python-pytest) ("python-nose" ,python-nose))) @@ -968,8 +966,8 @@ main intended application of Autograd is gradient-based optimization.") #:phases (modify-phases %standard-phases (replace 'check - (lambda* (#:key outputs #:allow-other-keys) - (with-directory-excursion ,(string-append "../LightGBM-" version) + (lambda _ + (with-directory-excursion "../source" (invoke "pytest" "tests/c_api_test/test_.py"))))))) (build-system cmake-build-system) (home-page "https://github.com/Microsoft/LightGBM") @@ -1066,7 +1064,7 @@ association studies (GWAS) on extremely large data sets.") (source (origin (method git-fetch) (uri (git-reference - (url "https://github.com/kaldi-asr/kaldi.git") + (url "https://github.com/kaldi-asr/kaldi") (commit commit))) (file-name (git-file-name name version)) (sha256 @@ -1177,7 +1175,7 @@ written in C++.") (source (origin (method git-fetch) (uri (git-reference - (url "https://github.com/alumae/gst-kaldi-nnet2-online.git") + (url "https://github.com/alumae/gst-kaldi-nnet2-online") (commit commit))) (file-name (git-file-name name version)) (sha256 @@ -1249,7 +1247,7 @@ automatically.") (source (origin (method git-fetch) (uri (git-reference - (url "https://github.com/alumae/kaldi-gstreamer-server.git") + (url "https://github.com/alumae/kaldi-gstreamer-server") (commit commit))) (file-name (git-file-name name version)) (sha256 @@ -1353,7 +1351,7 @@ Python.") (origin (method git-fetch) (uri (git-reference - (url "https://github.com/tensorflow/tensorflow.git") + (url "https://github.com/tensorflow/tensorflow") (commit (string-append "v" version)))) (file-name (string-append "tensorflow-" version "-checkout")) (sha256 @@ -1683,7 +1681,7 @@ INSTALL_RPATH " (assoc-ref outputs "out") "/lib)\n"))) (origin (method git-fetch) (uri (git-reference - (url "https://github.com/google/double-conversion.git") + (url "https://github.com/google/double-conversion") (commit commit))) (file-name (git-file-name "double-conversion" @@ -1728,7 +1726,7 @@ INSTALL_RPATH " (assoc-ref outputs "out") "/lib)\n"))) (origin (method git-fetch) (uri (git-reference - (url "https://github.com/google/highwayhash.git") + (url "https://github.com/google/highwayhash") (commit commit))) (file-name (string-append "highwayhash-0-" revision (string-take commit 7) @@ -1965,122 +1963,6 @@ that: @end itemize\n") (license license:expat))) -(define-public sbcl-cl-libsvm-format - (let ((commit "3300f84fd8d9f5beafc114f543f9d83417c742fb") - (revision "0")) - (package - (name "sbcl-cl-libsvm-format") - (version (git-version "0.1.0" revision commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/masatoi/cl-libsvm-format.git") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "0284aj84xszhkhlivaigf9qj855fxad3mzmv3zfr0qzb5k0nzwrg")))) - (build-system asdf-build-system/sbcl) - (native-inputs - `(("prove" ,sbcl-prove) - ("prove-asdf" ,sbcl-prove-asdf))) - (inputs - `(("alexandria" ,sbcl-alexandria))) - (synopsis "LibSVM data format reader for Common Lisp") - (description - "This Common Lisp library provides a fast reader for data in LibSVM -format.") - (home-page "https://github.com/masatoi/cl-libsvm-format") - (license license:expat)))) - -(define-public cl-libsvm-format - (sbcl-package->cl-source-package sbcl-cl-libsvm-format)) - -(define-public ecl-cl-libsvm-format - (sbcl-package->ecl-package sbcl-cl-libsvm-format)) - -(define-public sbcl-cl-online-learning - (let ((commit "fc7a34f4f161cd1c7dd747d2ed8f698947781423") - (revision "0")) - (package - (name "sbcl-cl-online-learning") - (version (git-version "0.5" revision commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/masatoi/cl-online-learning.git") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "14x95rlg80ay5hv645ki57pqvy12v28hz4k1w0f6bsfi2rmpxchq")))) - (build-system asdf-build-system/sbcl) - (native-inputs - `(("prove" ,sbcl-prove) - ("prove-asdf" ,sbcl-prove-asdf))) - (inputs - `(("cl-libsvm-format" ,sbcl-cl-libsvm-format) - ("cl-store" ,sbcl-cl-store))) - (arguments - `(;; FIXME: Tests pass but then the check phase crashes - #:tests? #f)) - (synopsis "Online Machine Learning for Common Lisp") - (description - "This library contains a collection of machine learning algorithms for -online linear classification written in Common Lisp.") - (home-page "https://github.com/masatoi/cl-online-learning") - (license license:expat)))) - -(define-public cl-online-learning - (sbcl-package->cl-source-package sbcl-cl-online-learning)) - -(define-public ecl-cl-online-learning - (sbcl-package->ecl-package sbcl-cl-online-learning)) - -(define-public sbcl-cl-random-forest - (let ((commit "85fbdd4596d40e824f70f1b7cf239cf544e49d51") - (revision "0")) - (package - (name "sbcl-cl-random-forest") - (version (git-version "0.1" revision commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/masatoi/cl-random-forest.git") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "097xv60i1ndz68sg9p4pc7c5gvyp9i1xgw966b4wwfq3x6hbz421")))) - (build-system asdf-build-system/sbcl) - (native-inputs - `(("prove" ,sbcl-prove) - ("prove-asdf" ,sbcl-prove-asdf) - ("trivial-garbage" ,sbcl-trivial-garbage))) - (inputs - `(("alexandria" ,sbcl-alexandria) - ("cl-libsvm-format" ,sbcl-cl-libsvm-format) - ("cl-online-learning" ,sbcl-cl-online-learning) - ("lparallel" ,sbcl-lparallel))) - (arguments - `(#:tests? #f)) ; The tests download data from the Internet - (synopsis "Random Forest and Global Refinement for Common Lisp") - (description - "CL-random-forest is an implementation of Random Forest for multiclass -classification and univariate regression written in Common Lisp. It also -includes an implementation of Global Refinement of Random Forest.") - (home-page "https://github.com/masatoi/cl-random-forest") - (license license:expat)))) - -(define-public cl-random-forest - (sbcl-package->cl-source-package sbcl-cl-random-forest)) - -(define-public ecl-cl-random-forest - (sbcl-package->ecl-package sbcl-cl-random-forest)) - (define-public gloo (let ((version "0.0.0") ; no proper version tag (commit "ca528e32fea9ca8f2b16053cff17160290fc84ce") @@ -2092,7 +1974,7 @@ includes an implementation of Global Refinement of Random Forest.") (origin (method git-fetch) (uri (git-reference - (url "https://github.com/facebookincubator/gloo.git") + (url "https://github.com/facebookincubator/gloo") (commit commit))) (file-name (git-file-name name version)) (sha256 |