diff options
Diffstat (limited to 'gnu/packages/maths.scm')
| -rw-r--r-- | gnu/packages/maths.scm | 222 |
1 files changed, 210 insertions, 12 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index b6d3ed3680..89e0a17ab1 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -35,6 +35,7 @@ #:use-module (guix build-system gnu) #:use-module (gnu packages algebra) #:use-module (gnu packages bison) + #:use-module (gnu packages check) #:use-module (gnu packages cmake) #:use-module (gnu packages compression) #:use-module (gnu packages curl) @@ -62,6 +63,7 @@ #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) #:use-module (gnu packages readline) + #:use-module (gnu packages tbb) #:use-module (gnu packages tcsh) #:use-module (gnu packages tcl) #:use-module (gnu packages texinfo) @@ -90,6 +92,32 @@ effectively as a scientific calculator.") (license license:gpl3+) (home-page "http://www.gnu.org/software/units/"))) +(define-public double-conversion + (package + (name "double-conversion") + (version "1.1.5") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/floitsch/double-conversion/archive/v" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0cnr8xhyjfxijay8ymkqcph3672wp2lj23qhdmr3m4kia5kpdf83")))) + (build-system cmake-build-system) + (arguments + '(#:test-target "test" + #:configure-flags '("-DBUILD_SHARED_LIBS=ON" + "-DBUILD_TESTING=ON"))) + (home-page "https://github.com/floitsch/double-conversion") + (synopsis "Conversion routines for IEEE doubles") + (description + "The double-conversion library provides binary-decimal and decimal-binary +routines for IEEE doubles. The library consists of efficient conversion +routines that have been extracted from the V8 JavaScript engine.") + (license license:bsd-3))) + (define-public dionysus (package (name "dionysus") @@ -255,7 +283,6 @@ large scale eigenvalue problems.") "0lk3f97i9imqascnlf6wr5mjpyxqcdj73pgj97dj2mgvyg9z1n4s")))) (build-system cmake-build-system) (home-page "http://www.netlib.org/lapack/") - (native-inputs `(("patchelf" ,patchelf))) ;for augment-rpath (inputs `(("fortran" ,gfortran-4.8) ("python" ,python-2))) (arguments @@ -355,6 +382,9 @@ extremely large and complex data collections.") `(("lapack" ,lapack) ("readline" ,readline) ("glpk" ,glpk) + ("fftw" ,fftw) + ("fftwf" ,fftwf) + ("arpack" ,arpack-ng) ("curl" ,curl) ("pcre" ,pcre) ("fltk" ,fltk) @@ -363,16 +393,18 @@ extremely large and complex data collections.") ("hdf5" ,hdf5) ("libxft" ,libxft) ("mesa" ,mesa) + ("glu" ,glu) ("zlib" ,zlib))) (native-inputs `(("gfortran" ,gfortran-4.8) ("pkg-config" ,pkg-config) ("perl" ,perl) - ;; The following inputs are not actually used in the build process. However, the - ;; ./configure gratuitously tests for their existence and assumes that programs not - ;; present at build time are also not, and can never be, available at run time! - ;; If these inputs are therefore not present, support for them will be built out. - ;; However, Octave will still run without them, albeit without the features they + ;; The following inputs are not actually used in the build process. + ;; However, the ./configure gratuitously tests for their existence and + ;; assumes that programs not present at build time are also not, and + ;; can never be, available at run time! If these inputs are therefore + ;; not present, support for them will be built out. However, Octave + ;; will still run without them, albeit without the features they ;; provide. ("less" ,less) ("texinfo" ,texinfo) @@ -384,11 +416,11 @@ extremely large and complex data collections.") "/bin/sh")))) (home-page "http://www.gnu.org/software/octave/") (synopsis "High-level language for numerical computation") - (description "GNU Octave is a high-level interpreted language that is specialized -for numerical computations. It can be used for both linear and non-linear -applications and it provides great support for visualizing results. Work may -be performed both at the interactive command-line as well as via script -files.") + (description "GNU Octave is a high-level interpreted language that is +specialized for numerical computations. It can be used for both linear and +non-linear applications and it provides great support for visualizing results. +Work may be performed both at the interactive command-line as well as via +script files.") (license license:gpl3+))) (define-public gmsh @@ -407,7 +439,6 @@ files.") ;; Remove non-free METIS code '(delete-file-recursively "contrib/Metis")))) (build-system cmake-build-system) - (native-inputs `(("patchelf" ,patchelf))) ;for augment-rpath (propagated-inputs `(("fltk" ,fltk) ("gfortran" ,gfortran-4.8) @@ -991,6 +1022,50 @@ based on transforming an expression into a bytecode and precalculating constant parts of it.") (license license:expat))) +(define-public openblas + (package + (name "openblas") + (version "0.2.14") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/xianyi/OpenBLAS/tarball/v" + version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0av3pd96j8rx5i65f652xv9wqfkaqn0w4ma1gvbyz73i6j2hi9db")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ;no "check" target + ;; DYNAMIC_ARCH is not supported on MIPS. When it is disabled, + ;; OpenBLAS will tune itself to the build host, so we need to disable + ;; substitutions. + #:substitutable? ,(not (string-prefix? "mips" (%current-system))) + #:make-flags + (list (string-append "PREFIX=" (assoc-ref %outputs "out")) + "SHELL=bash" + "NO_LAPACK=1" + ;; Build the library for all supported CPUs. This allows + ;; switching CPU targets at runtime with the environment variable + ;; OPENBLAS_CORETYPE=<type>, where "type" is a supported CPU type. + ;; Unfortunately, this is not supported on MIPS. + ,@(if (string-prefix? "mips" (%current-system)) + '() + '("DYNAMIC_ARCH=1"))) + ;; no configure script + #:phases (alist-delete 'configure %standard-phases))) + (inputs + `(("fortran" ,gfortran-4.8))) + (native-inputs + `(("cunit" ,cunit) + ("perl" ,perl))) + (home-page "http://www.openblas.net/") + (synopsis "Optimized BLAS library based on GotoBLAS") + (description + "OpenBLAS is a BLAS library forked from the GotoBLAS2-1.13 BSD version.") + (license license:bsd-3))) + (define-public openlibm (package (name "openlibm") @@ -1065,6 +1140,60 @@ Fresnel integrals, and similar related functions as well.") ;; public domain software. (license (list license:expat license:public-domain)))) +(define-public suitesparse + (package + (name "suitesparse") + (version "4.4.3") + (source + (origin + (method url-fetch) + (uri (string-append + "http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-" + version ".tar.gz")) + (sha256 + (base32 + "100hdzr0mf4mzlwnqpmwpfw4pymgsf9n3g0ywb1yps2nk1zbkdy5")))) + (build-system gnu-build-system) + (arguments + '(#:parallel-build? #f ;cholmod build fails otherwise + #:tests? #f ;no "check" target + #:make-flags + (list "CC=gcc" + "BLAS=-lblas" + "TBB=-ltbb" + "CHOLMOD_CONFIG=-DNPARTITION" ;required when METIS is not used + (string-append "INSTALL_LIB=" + (assoc-ref %outputs "out") "/lib") + (string-append "INSTALL_INCLUDE=" + (assoc-ref %outputs "out") "/include")) + #:phases + (alist-cons-before + 'install 'prepare-out + ;; README.txt states that the target directories must exist prior to + ;; running "make install". + (lambda _ + (mkdir-p (string-append (assoc-ref %outputs "out") "/lib")) + (mkdir-p (string-append (assoc-ref %outputs "out") "/include"))) + ;; no configure script + (alist-delete 'configure %standard-phases)))) + (inputs + `(("tbb" ,tbb) + ("lapack" ,lapack))) + (home-page "http://faculty.cse.tamu.edu/davis/suitesparse.html") + (synopsis "Suite of sparse matrix software") + (description + "SuiteSparse is a suite of sparse matrix algorithms, including: UMFPACK, +multifrontal LU factorization; CHOLMOD, supernodal Cholesky; SPQR, +multifrontal QR; KLU and BTF, sparse LU factorization, well-suited for circuit +simulation; ordering methods (AMD, CAMD, COLAMD, and CCOLAMD); CSparse and +CXSparse, a concise sparse Cholesky factorization package; and many other +packages.") + ;; LGPLv2.1+: + ;; AMD, CAMD, BTF, COLAMD, CCOLAMD, CSparse, CXSparse, KLU, LDL + ;; GPLv2+: + ;; GPUQREngine, RBio, SuiteSparse_GPURuntime, SuiteSparseQR, UMFPACK + (license (list license:gpl2+ license:lgpl2.1+)))) + (define-public atlas (package (name "atlas") @@ -1216,3 +1345,72 @@ library with poor performance.") library for graphics software based on the OpenGL Shading Language (GLSL) specifications.") (license license:expat))) + +(define-public lpsolve + (package + (name "lpsolve") + (version "5.5.2.0") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/lpsolve/lpsolve/" version + "/lp_solve_" version "_source.tar.gz")) + (sha256 + (base32 + "176c7f023mb6b8bfmv4rfqnrlw88lsg422ca74zjh19i2h5s69sq")) + (modules '((guix build utils))) + (snippet + '(substitute* (list "lp_solve/ccc" "lpsolve55/ccc") + (("^c=cc") "c=gcc") + ;; Pretend to be on a 64 bit platform to obtain a common directory + ;; name for the build results on all architectures; nothing else + ;; seems to depend on it. + (("^PLATFORM=.*$") "PLATFORM=ux64\n"))))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ; no check target + #:phases + (modify-phases %standard-phases + (delete 'configure) + (replace 'build + (lambda _ + (with-directory-excursion "lpsolve55" + (system* "bash" "ccc")) + (with-directory-excursion "lp_solve" + (system* "bash" "ccc")) + #t)) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin")) + (lib (string-append out "/lib")) + ;; This is where LibreOffice expects to find the header + ;; files, and where they are installed by Debian. + (include (string-append out "/include/lpsolve"))) + (mkdir-p lib) + (copy-file "lpsolve55/bin/ux64/liblpsolve55.a" + (string-append lib "/liblpsolve55.a")) + (copy-file "lpsolve55/bin/ux64/liblpsolve55.so" + (string-append lib "/liblpsolve55.so")) + (mkdir-p bin) + (copy-file "lp_solve/bin/ux64/lp_solve" + (string-append bin "/lp_solve")) + (mkdir-p include) + ;; Install a subset of the header files as on Debian + ;; (plus lp_bit.h, which matches the regular expression). + (for-each + (lambda (name) + (copy-file name (string-append include "/" name))) + (find-files "." "lp_[HMSa-z].*\\.h$")) + (with-directory-excursion "shared" + (for-each + (lambda (name) + (copy-file name (string-append include "/" name))) + (find-files "." "\\.h$"))) + #t)))))) + (home-page "http://lpsolve.sourceforge.net/") + (synopsis "Mixed integer linear programming (MILP) solver") + (description + "lp_solve is a mixed integer linear programming solver based on the +revised simplex and the branch-and-bound methods.") + (license license:lgpl2.1+))) |