diff options
Diffstat (limited to 'gnu/packages/maths.scm')
| -rw-r--r-- | gnu/packages/maths.scm | 97 |
1 files changed, 88 insertions, 9 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 8d0c10697f..64fe13b9bc 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -12,7 +12,7 @@ ;;; Copyright © 2015 Fabian Harfert <fhmgufs@web.de> ;;; Copyright © 2016 Roel Janssen <roel@gnu.org> ;;; Copyright © 2016 Kei Kebreau <kkebreau@posteo.net> -;;; Copyright © 2016, 2017 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2016 Leo Famulari <leo@famulari.name> ;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be> ;;; Copyright © 2017 Paul Garlick <pgarlick@tourbillion-technology.com> @@ -23,6 +23,7 @@ ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2017 Dave Love <me@fx@gnu.org> ;;; Copyright © 2018 Jan Nieuwenhuizen <janneke@gnu.org> +;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -418,18 +419,26 @@ computing convex hulls.") (define-public arpack-ng (package (name "arpack-ng") - (version "3.2.0") + (version "3.5.0") + (home-page "https://github.com/opencollab/arpack-ng") (source (origin (method url-fetch) - (uri (string-append "https://github.com/opencollab/arpack-ng/archive/" - version ".tar.gz")) + (uri (string-append home-page "/archive/" version ".tar.gz")) (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "1fwch6vipms1ispzg2djvbzv5wag36f1dmmr3xs3mbp6imfyhvff")))) + "0f8jx3fifmj9qdp289zr7r651y1q48k1jya859rqxq62mvis7xsh")))) (build-system gnu-build-system) - (home-page "https://github.com/opencollab/arpack-ng") + (arguments + '(#:phases (modify-phases %standard-phases + (add-after 'unpack 'autoreconf + (lambda _ + (invoke "autoreconf" "-vfi")))))) + (native-inputs + `(("autoconf" ,autoconf) + ("automake" ,automake) + ("libtool" ,libtool))) (inputs `(("lapack" ,lapack) ("fortran" ,gfortran))) @@ -440,6 +449,21 @@ large scale eigenvalue problems.") (license (license:non-copyleft "file://COPYING" "See COPYING in the distribution.")))) +(define-public arpack-ng-3.3.0 + (package + (inherit arpack-ng) + (version "3.3.0") + (name (package-name arpack-ng)) + (home-page (package-home-page arpack-ng)) + (source + (origin + (method url-fetch) + (uri (string-append home-page "/archive/" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1cz53wqzcf6czmcpfb3vb61xi0rn5bwhinczl65hpmbrglg82ndd")))))) + (define-public arpack-ng-openmpi (package (inherit arpack-ng) (name "arpack-ng-openmpi") @@ -724,7 +748,11 @@ incompatible with HDF5.") ;; unnecessary store references to those compilers: (substitute* "src/libhdf5.settings" (("(/gnu/store/)([a-Z0-9]*)" all prefix hash) - (string-append prefix (string-take hash 10) "..."))) + (string-append prefix (string-take hash 10) "...")) + ;; Don't record the build-time kernel version to make the + ;; settings file reproducible. + (("Uname information:.*") + "Uname information: Linux\n")) #t)) (add-after 'install 'patch-references (lambda* (#:key inputs outputs #:allow-other-keys) @@ -1280,7 +1308,7 @@ can solve two kinds of problems: (define-public octave (package (name "octave") - (version "4.2.1") + (version "4.2.2") (source (origin (method url-fetch) @@ -1288,7 +1316,7 @@ can solve two kinds of problems: version ".tar.lz")) (sha256 (base32 - "09zhhch79jw3ynw39vizx0i2cbd2bjz3sp38pjdzraqrbivpwp92")))) + "0pkkz1vazsh7ipffb09q0nc2jgx6q27pkkngygjij6jrpcly5zsp")))) (build-system gnu-build-system) (inputs `(("lapack" ,lapack) @@ -3727,3 +3755,54 @@ specifications. Also, state spaces can be manipulated, visualised and analysed.") (home-page "http://mcrl2.org") (license license:boost1.0))) + +(define-public r-subplex + (package + (name "r-subplex") + (version "1.5-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "subplex" version)) + (sha256 + (base32 + "1v9xrnkapnq7v1jbhlg32ignklzf2vn8rqpayc8pzk8wvz53r33g")))) + (build-system r-build-system) + (native-inputs + `(("gfortran" ,gfortran))) + (home-page "https://cran.r-project.org/web/packages/subplex") + (synopsis "Unconstrained optimization using the subplex algorithm") + (description "This package implements the Subplex optimization algorithm. +It solves unconstrained optimization problems using a simplex method on +subspaces. The method is well suited for optimizing objective functions that +are noisy or are discontinuous at the solution.") + (license license:gpl3+))) + +(define-public r-desolve + (package + (name "r-desolve") + (version "1.20") + (source + (origin + (method url-fetch) + (uri (cran-uri "deSolve" version)) + (sha256 + (base32 + "18nx3maww979a8p8ly4hv63y65mnjx8vbj2fpipd6rhcbf1lbsan")))) + (properties `((upstream-name . "deSolve"))) + (build-system r-build-system) + (native-inputs + `(("gfortran" ,gfortran))) + (home-page "https://desolve.r-forge.r-project.org/") + (synopsis "Solvers for initial value problems of differential equations") + (description "This package provides functions that solve initial +value problems of a system of first-order ordinary differential equations (ODE), +of partial differential equations (PDE), of differential algebraic equations +(DAE), and of delay differential equations. The functions provide an interface +to the FORTRAN functions lsoda, lsodar, lsode, lsodes of the ODEPACK collection, +to the FORTRAN functions dvode and daspk and a C-implementation of solvers of +the Runge-Kutta family with fixed or variable time steps. The package contains +routines designed for solving ODEs resulting from 1-D, 2-D and 3-D partial +differential equations (PDE) that have been converted to ODEs by numerical +differencing.") + (license license:gpl2+))) |