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-rw-r--r--gnu/packages/python-xyz.scm390
1 files changed, 257 insertions, 133 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index a4c8c0bc29..623f619ade 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -187,6 +187,7 @@
#:use-module (gnu packages libevent)
#:use-module (gnu packages libffi)
#:use-module (gnu packages libidn)
+ #:use-module (gnu packages libusb)
#:use-module (gnu packages linux)
#:use-module (gnu packages llvm)
#:use-module (gnu packages man)
@@ -1515,14 +1516,14 @@ approximate nearest neighbor search with Python bindings.")
(define-public python-sh
(package
(name "python-sh")
- (version "1.12.14")
+ (version "1.14.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "sh" version))
(sha256
(base32
- "1z2hx357xp3v4cv44xmqp7lli3frndqpyfmpbxf7n76h7s1zaaxm"))))
+ "03gyss1rhj4in7pgysg4q0hxp3230whinlpy1532ljs99lrx0ywx"))))
(build-system python-build-system)
(arguments
'(#:phases
@@ -2071,6 +2072,30 @@ abstractions to different hardware devices, and a suite of utilities for
sending and receiving messages on a CAN bus.")
(license license:lgpl3+)))
+(define-public python-canopen
+ (package
+ (name "python-canopen")
+ (version "2.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "canopen" version))
+ (sha256
+ (base32 "1nb543wb37kj95v6bhh272lm5gkpi41q3pnsl1fxlyizm2gamj5w"))))
+ (build-system python-build-system)
+ (native-inputs (list python-packaging))
+ (propagated-inputs (list python-can))
+ (home-page "https://github.com/christiansandberg/canopen")
+ (synopsis "CANopen stack implementation")
+ (description
+ "This package provides a Python implementation of the
+@uref{https://www.can-cia.org/canopen/,CANopen standard} for
+@acronym{CANs, controller-area networks}. The aim of the project is to
+support the most common parts of the CiA 301 standard in a simple
+Pythonic interface. It is mainly targeted for testing and automation
+tasks rather than a standard compliant master implementation.")
+ (license license:expat)))
+
(define-public python-caniusepython3
(package
(name "python-caniusepython3")
@@ -3424,6 +3449,42 @@ compare, diff, and patch JSON and JSON-like structures in Python.")
"Jsonschema is an implementation of JSON Schema for Python.")
(license license:expat)))
+;;; TODO: Make the default python-jsonschema on core-updates
+(define-public python-jsonschema-next
+ (package
+ (inherit python-jsonschema)
+ (version "4.5.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "jsonschema" version))
+ (sha256
+ (base32 "1z0x22691jva7lwfcfh377jdmlz68zhiawxzl53k631l34k8hvbw"))))
+ (arguments
+ (substitute-keyword-arguments (package-arguments python-jsonschema)
+ ((#:phases phases)
+ #~(modify-phases #$phases
+ ;; XXX: PEP 517 manual build/install procedures copied from
+ ;; python-isort.
+ (replace 'build
+ (lambda _
+ ;; ZIP does not support timestamps before 1980.
+ (setenv "SOURCE_DATE_EPOCH" "315532800")
+ (invoke "python" "-m" "build" "--wheel" "--no-isolation" ".")))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((whl (car (find-files "dist" "\\.whl$"))))
+ (invoke "pip" "--no-cache-dir" "--no-input"
+ "install" "--no-deps" "--prefix" #$output whl))))))))
+ (native-inputs (list python-pypa-build
+ python-setuptools-scm
+ python-twisted))
+ (propagated-inputs
+ (list python-attrs
+ python-importlib-metadata
+ python-pyrsistent
+ python-typing-extensions))))
+
(define-public python-schema
(package
(name "python-schema")
@@ -5601,24 +5662,27 @@ readable format.")
(define-public python-pygit2
(package
(name "python-pygit2")
- (version "1.9.1")
+ (version "1.9.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pygit2" version))
(sha256
- (base32 "1jdr6z1il03nifwgpcdf95w6xzzbfzdkcqq5dcqjaa0rnv1pjr7g"))))
+ (base32 "068bwhirigbh2435abyv4shdxgxvyfqf4dxfmhd4hihivwrl9290"))))
(build-system python-build-system)
(arguments
- '(#:tests? #f)) ; tests don't run correctly in our environment
+ `(#:phases (modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (invoke "pytest" "-v")))))))
(propagated-inputs
(list python-cached-property python-cffi libgit2))
(native-inputs
(list python-pytest))
(home-page "https://github.com/libgit2/pygit2")
(synopsis "Python bindings for libgit2")
- (description "Pygit2 is a set of Python bindings to the libgit2 shared
-library, libgit2 implements Git plumbing.")
+ (description "Pygit2 is a set of Python bindings to the libgit2 shared library.")
;; GPL2.0 only, with linking exception.
(license license:gpl2)))
@@ -6407,21 +6471,22 @@ a simple netcat replacement with chaining support.")
(define-public python-pycodestyle
(package
(name "python-pycodestyle")
- (version "2.7.0")
+ (version "2.8.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pycodestyle" version))
(sha256
(base32
- "1vqwmzmjdv331kmfq3q9j3as2x7r2r49lf83r9w4147pdg8c32f3"))))
+ "0zxyrg8029lzjhima6l5nk6y0z6lm5wfp9qchz3s33j3xx3mipgd"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(replace 'check
- (lambda _
- (invoke "pytest" "-vv"))))))
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (invoke "pytest" "-vv")))))))
(native-inputs
(list python-pytest))
(home-page "https://pycodestyle.readthedocs.io/")
@@ -10015,17 +10080,16 @@ PEP 8.")
(define-public python-pep8-naming
(package
(name "python-pep8-naming")
- (version "0.12.0")
+ (version "0.13.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pep8-naming" version))
(sha256
(base32
- "04kyh9hkpyc8jzj16d1kkk29b5n8miqdvbs0zm035n1z5z5kx6hz"))))
+ "1dc0b6xw1cxp01v9zsv4ryk49rfs1lngfpvzsixgp8b7z3ffcf4z"))))
(build-system python-build-system)
- (propagated-inputs
- (list python-flake8 python-flake8-polyfill))
+ (propagated-inputs (list python-flake8))
(home-page "https://github.com/PyCQA/pep8-naming")
(synopsis "Check PEP-8 naming conventions")
(description
@@ -10101,14 +10165,14 @@ file (e.g. @file{PKG-INFO}).")
(define-public python-pyflakes
(package
(name "python-pyflakes")
- (version "2.3.1")
+ (version "2.4.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyflakes" version))
(sha256
(base32
- "1ny10364ciqh4ripasj4zzv4145l21l3s85m3qlrvfq5pk58xg7m"))))
+ "0k5jn8jpxni264wxf6cc3xcd1qckc0pww30bsd77mwzdf8l5ra05"))))
(build-system python-build-system)
(home-page "https://github.com/PyCQA/pyflakes")
(synopsis "Passive checker of Python programs")
@@ -10152,23 +10216,26 @@ cyclomatic complexity of Python source code.")
(define-public python-flake8
(package
(name "python-flake8")
- (version "3.9.1")
+ (version "4.0.1")
(source (origin
(method url-fetch)
(uri (pypi-uri "flake8" version))
(sha256
(base32
- "0y732h02n2aih8gzyfj4bbhg4jgahyv84mjwfindk2g6w45rka0s"))))
+ "03c7mnk34wfz7a0m5zq0273y94awz69fy5iww8alh4a4v96h6vl0"))))
(build-system python-build-system)
(arguments
`(#:phases (modify-phases %standard-phases
(replace 'check
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (add-installed-pythonpath inputs outputs)
- (invoke "pytest" "-v"))))))
- (propagated-inputs (list python-pycodestyle python-entrypoints
- python-pyflakes python-mccabe))
- (native-inputs (list python-mock python-pytest))
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (invoke "pytest" "-v")))))))
+ (propagated-inputs
+ (list python-entrypoints
+ python-mccabe
+ python-pycodestyle
+ python-pyflakes))
+ (native-inputs (list python-pytest))
(home-page "https://gitlab.com/pycqa/flake8")
(synopsis "The modular source code checker: pep8, pyflakes and co")
(description
@@ -10281,40 +10348,6 @@ the same line (which can be introduced by the code formatting tool Black), or
unnecessary plus operators for explicit string literal concatenation.")
(license license:expat)))
-(define-public python-flake8-polyfill
- (package
- (name "python-flake8-polyfill")
- (version "1.0.2")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "flake8-polyfill" version))
- (sha256
- (base32
- "1nlf1mkqw856vi6782qcglqhaacb23khk9wkcgn55npnjxshhjz4"))))
- (build-system python-build-system)
- (arguments
- '(#:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda _
- ;; Be compatible with Pytest 4:
- ;; https://gitlab.com/pycqa/flake8-polyfill/merge_requests/7
- (substitute* "setup.cfg"
- (("\\[pytest\\]")
- "[tool:pytest]"))
- (invoke "py.test" "-v"))))))
- (propagated-inputs
- (list python-flake8))
- (native-inputs
- (list python-mock python-pep8 python-pycodestyle python-pytest))
- (home-page "https://gitlab.com/pycqa/flake8-polyfill")
- (synopsis "Polyfill package for Flake8 plugins")
- (description
- "This package that provides some compatibility helpers for Flake8
-plugins that intend to support Flake8 2.x and 3.x simultaneously.")
- (license license:expat)))
-
(define-public python-flake8-print
(package
(name "python-flake8-print")
@@ -10996,13 +11029,13 @@ third-party code.")
(define-public python-msgpack
(package
(name "python-msgpack")
- (version "1.0.3")
+ (version "1.0.4")
(source (origin
(method url-fetch)
(uri (pypi-uri "msgpack" version))
(sha256
(base32
- "07m84yisf8m6gr68ip9v6vzxax7kqbn8qxg7ir18clk1jgxwgzai"))))
+ "0pqzy1zclyhd42gfibhkcqymbspy5a6v421g87mh40h3iz0nkn7m"))))
(build-system python-build-system)
(arguments
`(#:modules ((guix build utils)
@@ -12427,6 +12460,13 @@ Python.")
(build-system python-build-system)
(arguments
`(#:phases (modify-phases %standard-phases
+ (add-after 'unpack 'set-version
+ ;; for reproducible builds, otherwise python-debian
+ ;; generates a _version.py including the date
+ (lambda _
+ (copy-file "lib/debian/_version.py.in" "lib/debian/_version.py")
+ (substitute* "lib/debian/_version.py"
+ (("__CHANGELOG_VERSION__") ,version))))
(add-after 'unpack 'remove-debian-specific-tests
;; python-apt, apt and dpkg are not yet available in guix,
;; and these tests heavily depend on them.
@@ -13498,17 +13538,6 @@ for atomic file system operations.")
(home-page "https://github.com/untitaker/python-atomicwrites")
(license license:expat)))
-(define-public python-atomicwrites-1.4
- (package
- (inherit python-atomicwrites)
- (version "1.4.0")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "atomicwrites" version))
- (sha256
- (base32
- "0yla2svfhfqrcj8qbyqzx7wi4jy0dwcxvlkg0k3zjd54s5m3jw5f"))))))
-
(define-public python-qstylizer
(package
(name "python-qstylizer")
@@ -13862,6 +13891,25 @@ to the Python ecosystem.")
"Promises/A+ implementation for Python")
(license license:expat)))
+(define-public python-progress
+ (package
+ (name "python-progress")
+ (version "1.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "progress" version))
+ (sha256
+ (base32 "1k9lpb7lqr6mywpnqcz71y6qny54xlgprdp327za2gy0nnc6xj69"))))
+ (build-system python-build-system)
+ (home-page "http://github.com/verigak/progress/")
+ (synopsis "Progress reporting bars for Python")
+ (description "This Python package provides progress reporting for visual
+of progress of long running operations. There are multiple choices of
+progress bars and spinners, with customizable options, such as width, fill
+character, and suffix.")
+ (license license:isc)))
+
(define-public python-progressbar2
(package
(name "python-progressbar2")
@@ -15495,20 +15543,33 @@ respectively.")
(define-public python-rope
(package
(name "python-rope")
- (version "0.19.0")
+ (version "1.1.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "rope" version))
(sha256
(base32
- "1nlhkmsfvn2p1msrmwqnypnvr993alzawnpc1605q7rfad3xgrk4"))))
+ "0bkzwkllxxdxd3w70xiy137lqvnlmmaplsc2ya3s23ss4kq8y10k"))))
(build-system python-build-system)
+ (arguments
+ (list #:phases
+ `(modify-phases %standard-phases
+ (add-after 'unpack 'disable-broken-test
+ (lambda _
+ (substitute* "ropetest/contrib/autoimporttest.py"
+ (("def test_search_module")
+ "def __notest_search_module")
+ (("def test_search_submodule")
+ "def __notest_search_submodule")))))))
+ (native-inputs
+ (list python-pytest-timeout
+ python-pytest))
(home-page "https://github.com/python-rope/rope")
(synopsis "Refactoring library for Python")
(description "Rope is a refactoring library for Python. It facilitates
the renaming, moving and extracting of attributes, functions, modules, fields
-and parameters in Python 2 source code. These refactorings can also be applied
+and parameters in Python source code. These refactorings can also be applied
to occurrences in strings and comments.")
(license license:lgpl3+)))
@@ -16078,25 +16139,14 @@ implementation has been adapted, improved, and fixed from Molten.")
(define-public python-shellingham
(package
(name "python-shellingham")
- (version "1.3.2")
+ (version "1.4.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "shellingham" version))
(sha256
- (base32 "07kmia2hvd2q7wik89m82hig9mqr2faynvy38vxq5fm0ps11jv2p"))))
+ (base32 "07hpndvcv9mf9hp54b4apzpwzmzfzl8ryaacsfdq4139im2w4ma8"))))
(build-system python-build-system)
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'restore-setup.py
- ;; setup.py will return in the next release.
- ;; <https://github.com/sarugaku/shellingham/issues/33>
- (lambda _
- (with-output-to-file "setup.py"
- (lambda _
- (display "from setuptools import setup\nsetup()\n")))
- #t)))))
(home-page "https://github.com/sarugaku/shellingham")
(synopsis "Tool to detect surrounding shell")
(description
@@ -16975,6 +17025,91 @@ as well.")
@end itemize")
(license license:bsd-3)))
+(define-public python-exodriver
+ (package
+ (name "python-exodriver")
+ (version "2.6.0")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/labjack/exodriver")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1ikjz8147p14s814yabdq821y691klnr2yg54zgsymcc97kvwp2q"))))
+ (outputs (list "out"
+ "doc")) ;544 KiB of examples
+ (build-system gnu-build-system)
+ (arguments
+ (list
+ #:tests? #f ;no test suite
+ #:make-flags #~(list (string-append "CC=" #$(cc-for-target))
+ (string-append "PREFIX=" #$output)
+ "RUN_LDCONFIG=0"
+ "LINK_SO=1")
+ #:phases
+ #~(modify-phases %standard-phases
+ (delete 'configure)
+ (replace 'build
+ (lambda* (#:key make-flags #:allow-other-keys #:rest args)
+ (with-directory-excursion "liblabjackusb"
+ (apply (assoc-ref %standard-phases 'build)
+ `(,@args #:make-flags ,make-flags)))))
+ (replace 'install
+ (lambda* (#:key make-flags #:allow-other-keys #:rest args)
+ (with-directory-excursion "liblabjackusb"
+ (apply (assoc-ref %standard-phases 'install)
+ `(,@args #:make-flags ,make-flags)))
+ ;; Install udev rules.
+ (install-file "90-labjack.rules"
+ (string-append #$output "/lib/udev/rules.d"))
+ ;; Install examples.
+ (let ((doc (string-append #$output:doc "/share/doc/" #$name)))
+ (mkdir-p doc)
+ (copy-recursively "examples"
+ (string-append doc "/examples"))))))))
+ (inputs (list libusb))
+ (home-page "https://github.com/labjack/exodriver")
+ (synopsis "USB driver for LabJack data acquisition instruments")
+ (description "This package provides @code{liblabjackusb}, a USB library for low-level
+communication with the U3, U6, UE9, Digit, T4 and T7 LabJack data acquisition
+instruments. A udev rule is also included to allow unprivileged users to
+communicate with the instruments via USB.")
+ (license license:expat))) ;see README
+
+(define-public python-labjack
+ (package
+ (name "python-labjack")
+ (version "2.0.4")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "LabJackPython" version))
+ (sha256
+ (base32
+ "013bjqdi05vlbdqprr6kqi8gs4qhqc7rnyp1klw8k6fng77rpdzz"))))
+ (build-system python-build-system)
+ (arguments
+ (list
+ #:tests? #f ;no test suite
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'patch-liblabjackusb.so
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* (find-files "." "\\.py$")
+ (("ctypes.CDLL\\(\"liblabjackusb.so\"")
+ (format #f "ctypes.CDLL(~s"
+ (search-input-file inputs
+ "lib/liblabjackusb.so")))))))))
+ ;; exodriver is provided as a regular input, as only its shared object is
+ ;; used, not its Python API.
+ (inputs (list python-exodriver))
+ (home-page "https://labjack.com/support/software/examples/ud/labjackpython")
+ (synopsis "Python library for LabJack U3, U6, UE9 and U12")
+ (description "This Python library allows communicating with the U3, U6,
+UE9 and U12 LabJack data acquisition (DAQ) modules.")
+ (license license:expat))) ;see setup.py
+
(define-public python-kivy-garden
(package
(name "python-kivy-garden")
@@ -18909,14 +19044,14 @@ while only declaring the test-specific fields.")
(define-public python-radon
(package
(name "python-radon")
- (version "4.1.0")
+ (version "5.1.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "radon" version))
(sha256
(base32
- "0vfxxzbnz5lxfvp0yxp35g6c8qqnnbhi4dm7shkm1d3d4192q22n"))))
+ "1vmf56zsf3paa1jadjcjghiv2kxwiismyayq42ggnqpqwm98f7fb"))))
(build-system python-build-system)
(arguments
`(#:phases (modify-phases %standard-phases
@@ -18930,10 +19065,8 @@ while only declaring the test-specific fields.")
(replace 'check
(lambda _
(invoke "python" "radon/tests/run.py"))))))
- (propagated-inputs
- (list python-colorama python-flake8-polyfill python-mando))
- (native-inputs
- (list python-pytest python-pytest-mock))
+ (propagated-inputs (list python-colorama python-mando))
+ (native-inputs (list python-pytest python-pytest-mock))
(home-page "https://radon.readthedocs.org/")
(synopsis "Code Metrics in Python")
(description "Radon is a Python tool which computes various code metrics.
@@ -19659,41 +19792,6 @@ complete rewrite in Cython to attempt to increase the performance over the
pure Python module.")
(license license:bsd-3)))
-(define-public python-xenon
- (package
- (name "python-xenon")
- (version "0.7.0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "xenon" version))
- (sha256
- (base32
- "0nv207ql2wmh9q62503np056c4vf1c1hlsi5cvv5p5kx574k6r2y"))))
- (build-system python-build-system)
- (native-inputs
- (list python-pyyaml python-radon python-requests python-flake8
- python-tox))
- (arguments
- `(#:tests? #f ;test suite not shipped with the PyPI archive
- #:phases
- (modify-phases %standard-phases
- (add-before 'build 'patch-test-requirements
- (lambda _
- ;; Remove httpretty dependency for tests.
- (substitute* "setup.py"
- (("httpretty") ""))
- #t)))))
- (home-page "https://xenon.readthedocs.org/")
- (synopsis "Monitor code metrics for Python on your CI server")
- (description
- "Xenon is a monitoring tool based on Radon. It monitors code complexity.
-Ideally, @code{xenon} is run every time code is committed. Through command
-line options, various thresholds can be set for the complexity of code. It
-will fail (i.e. it will exit with a non-zero exit code) when any of these
-requirements is not met.")
- (license license:expat)))
-
(define-public python-pysocks
(package
(name "python-pysocks")
@@ -24279,7 +24377,13 @@ with features similar to the @command{wget} utility.")
(build-system python-build-system)
(arguments
;; No tests
- `(#:tests? #f))
+ `(#:tests? #f
+ #:phases (modify-phases %standard-phases
+ (add-after 'unpack 'patch-for-pygit2
+ (lambda _
+ (substitute* "offlate/systems/git.py"
+ (("pygit2.remote.RemoteCallbacks")
+ "pygit2.RemoteCallbacks")))))))
(propagated-inputs
(list python-android-stringslib
python-dateutil
@@ -28211,13 +28315,13 @@ to:
(define-public nikola
(package
(name "nikola")
- (version "8.1.3")
+ (version "8.2.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "Nikola" version))
(sha256
- (base32 "1vspzvi4039zgjc93bspqjb384r6c9ksvmidbp8csws2pdbc7sh5"))))
+ (base32 "1h96y4sfypp2fbqxa8xrqch5f7r3srm2ly222k9w2n143h2spx4m"))))
(build-system python-build-system)
(propagated-inputs
(list python-babel
@@ -28253,7 +28357,6 @@ to:
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
- ;;(add-installed-pythonpath inputs outputs)
(invoke "pytest" "tests" "--no-cov"
"-k" "not test_compiling_markdown[hilite]")))))))
(home-page "https://getnikola.com/")
@@ -29315,3 +29418,24 @@ profile. It supports:
Currently, Linux is the only platform supported by this library.")
(license license:expat)))
+
+(define-public python-musical-scales
+ (package
+ (name "python-musical-scales")
+ (version "1.0.1")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "musical-scales" version))
+ (sha256
+ (base32
+ "1ckn8n37i7b65h0i385ycn0w8sg9na0iabz0kmhxxc1wj0hddkw9"))))
+ (build-system python-build-system)
+ (native-inputs (list python-wheel))
+ (home-page "https://github.com/hmillerbakewell/musical-scale")
+ (synopsis "Retrieve a scale based on a given mode and starting note")
+ (description
+ "Retrieve a scale based on a given mode and starting note.
+Information about these scales can be
+@url{https://en.wikipedia.org/wiki/List_of_musical_scales_and_modes, found on
+Wikipedia}.")
+ (license license:expat)))