diff options
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 106 |
1 files changed, 98 insertions, 8 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 5a4220541e..0e12f75357 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -6082,17 +6082,99 @@ a general image processing tool.") (description "This package is a fork of Pillow which adds support for SIMD parallelism."))) +(define-public python-imagecodecs + (package + (name "python-imagecodecs") + (version "2021.3.31") + (source + (origin + (method url-fetch) + (uri (pypi-uri "imagecodecs" version)) + (sha256 + (base32 + "0q7pslb6wd56vbcq2mdxwsiha32mxjr7mgqqfbq5w42q601p9pi0")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Unbundle 3rd party modules. + (delete-file-recursively "3rdparty") + ;; Delete pre-generated Cython files. + (for-each delete-file (find-files "imagecodecs" "_.*\\.c$")) + #t)))) + (build-system python-build-system) + (arguments + `(#:tests? #f ; Tests are disabled, because dependencies are missing. + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'create-configuration + (lambda* (#:key inputs #:allow-other-keys) + ;; By default everything is enabled. We can selectively disable + ;; extensions (and thus dependencies) by deleting them from the + ;; EXTENSIONS dictionary. This is upstream’s preferred way. + (call-with-output-file "imagecodecs_distributor_setup.py" + (lambda (port) + (format port "\ +def customize_build(EXTENSIONS, OPTIONS): + del EXTENSIONS['aec'] + del EXTENSIONS['avif'] + del EXTENSIONS['bitshuffle'] + del EXTENSIONS['deflate'] + del EXTENSIONS['jpeg2k'] + del EXTENSIONS['jpeg12'] + del EXTENSIONS['jpegls'] + del EXTENSIONS['jpegxl'] + del EXTENSIONS['jpegxr'] + del EXTENSIONS['lerc'] + del EXTENSIONS['ljpeg'] + del EXTENSIONS['lzf'] + del EXTENSIONS['zfp'] + del EXTENSIONS['zopfli'] + OPTIONS['cythonize'] +"))) + #t))))) + (inputs + `(("c-blosc" ,c-blosc) + ("giflib" ,giflib) + ("google-brotli" ,google-brotli) + ("libjpeg-turbo" ,libjpeg-turbo) + ("libpng" ,libpng) + ("libtiff" ,libtiff) + ("libwebp" ,libwebp) + ("lz4" ,lz4) + ("snappy" ,snappy) + ("xz" ,xz) + ("zlib" ,zlib) + ("zstd" ,zstd "lib"))) + (propagated-inputs + `(("python-numpy" ,python-numpy))) + (native-inputs + ;; For building. + `(("python-cython" ,python-cython) + ;; For testing. Incomplete. + ;("python-numcodecs" ,python-numcodecs) + ;("python-zarr" ,python-zarr) + ;("python-pytest" ,python-pytest) + )) + (home-page "https://www.lfd.uci.edu/~gohlke/") + (synopsis + "Image transformation, compression, and decompression codecs") + (description + "Imagecodecs is a Python library that provides block-oriented, in-memory +buffer transformation, compression, and decompression functions for use in the +tifffile, czifile, and other scientific image input/output modules.") + (license license:bsd-3))) + (define-public python-roifile (package (name "python-roifile") - (version "2020.5.28") + (version "2020.11.28") (source (origin (method url-fetch) (uri (pypi-uri "roifile" version)) (sha256 (base32 - "1vwbwfsw745gyqymff6dllc5zqjsgqmxaw245sw4an6yw9rcbzc0")))) + "04argnc7qccybkrj9ww18bf81ghsghhh93hnqy3p111rcdlyn66p")))) (build-system python-build-system) (arguments `(#:tests? #f)) ; there are none (propagated-inputs @@ -6107,21 +6189,20 @@ regions of interest, geometric shapes, paths, text, etc for image overlays.") (define-public python-tifffile (package (name "python-tifffile") - (version "2020.6.3") + (version "2021.4.8") (source (origin (method url-fetch) (uri (pypi-uri "tifffile" version)) (sha256 (base32 - "0xv3ynkbrsibqvx7250075idb7wm3canjd6lx2nzf3cbp6l07577")))) + "16r0hw7shka1bqf28bv198lj2jhf2r9gy3s5zv4nf5cfsfm8pajm")))) (build-system python-build-system) ;; Tests require lfdfiles, which depends on tifffile (arguments `(#:tests? #f)) (propagated-inputs `(("python-numpy" ,python-numpy) - ;;("python-lfdfiles" ,python-lfdfiles) - ("python-roifile" ,python-roifile))) + ("python-imagecodecs" ,python-imagecodecs))) (home-page "https://www.lfd.uci.edu/~gohlke/") (synopsis "Read and write TIFF(r) files") (description "This package lets you read image and metadata from many @@ -6133,19 +6214,28 @@ numpy arrays to TIFF, BigTIFF, and ImageJ hyperstack compatible files.") (define-public python-lfdfiles (package (name "python-lfdfiles") - (version "2020.1.1") + (version "2021.2.22") (source (origin (method url-fetch) (uri (pypi-uri "lfdfiles" version)) (sha256 (base32 - "1n9bkfn4vxl0lbhzd0m35lq86ayx5fwcj3ghpfl2vbjbsnfp3h47")))) + "12fxm4v805dgjrih7x6jnl1wd7y7jw1rkhjs3d4am8s6qk1cbar2")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Delete pre-generated Cython files. + (for-each delete-file (find-files "lfdfiles" "_.*\\.c$")) + #t)))) (build-system python-build-system) + (arguments + `(#:tests? #f)) ; No tests exist, despite a test dependency on pytest. (propagated-inputs `(("python-click" ,python-click) ("python-numpy" ,python-numpy) ("python-tifffile" ,python-tifffile))) + (native-inputs `(("python-cython" ,python-cython))) (home-page "https://www.lfd.uci.edu/~gohlke/") (synopsis "Work with LFD data files") (description |