diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 122 |
1 files changed, 68 insertions, 54 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 4ae40d0a46..ee3df4dd83 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -227,7 +227,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") (define r-with-tests (package (name "r-with-tests") - (version "4.3.3") + (version "4.4.0") (source (origin (method url-fetch) (uri (string-append "mirror://cran/src/base/R-" @@ -235,7 +235,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") version ".tar.gz")) (sha256 (base32 - "0c03abq3kqg6d2yhrijy9j3fsl77har3k7pffwwbz19v74qi51c0")))) + "0c7hnmr0w26vpaf8b10m83f4w3g3fl6a7z65pi9jqvcpkdgi5r5c")))) (build-system gnu-build-system) (arguments (list @@ -539,14 +539,14 @@ D.V. Hinkley (1997, CUP), originally written by Angelo Canty for S.") (define-public r-mass (package (name "r-mass") - (version "7.3-60.0.1") + (version "7.3-60.2") (source (origin (method url-fetch) (uri (cran-uri "MASS" version)) (sha256 (base32 - "1gdd2gyqngvgnm0bxc3a33nykrx2rbfmxj82i7bh7f1961cr7pvl")))) + "13ky8mbni09zviv5lan10ff6l2klsfv7v3vmfq88dxpz8xknx75v")))) (properties `((upstream-name . "MASS"))) (build-system r-build-system) (home-page "https://www.stats.ox.ac.uk/pub/MASS4/") @@ -687,14 +687,14 @@ also flexible enough to handle most nonstandard requirements.") (define-public r-matrix (package (name "r-matrix") - (version "1.6-5") + (version "1.7-0") (source (origin (method url-fetch) (uri (cran-uri "Matrix" version)) (sha256 (base32 - "0zdrrss4q0g7jify9bp1vvzrdpy62fc6fx3awzbd2wvfc938sv3j")))) + "0dxd13y6x6pz54ccbcalw2sm646h9pls4bby9zmj40ipvyhbp5zv")))) (properties `((upstream-name . "Matrix"))) (build-system r-build-system) (propagated-inputs @@ -811,14 +811,14 @@ analysis.") (define-public r-survival (package (name "r-survival") - (version "3.5-8") + (version "3.6-4") (source (origin (method url-fetch) (uri (cran-uri "survival" version)) (sha256 (base32 - "1d0qvw4200mjldna9n0acis0fk8xj28wwzqb8c3d4537l92zivbi")))) + "1zpfqslpzck10pmaiyc8x7852ajbjd0l6aw18hwfrm418wjamy1f")))) (build-system r-build-system) (propagated-inputs (list r-matrix)) @@ -1007,13 +1007,13 @@ OpenSSL should be used.") (define-public r-estimability (package (name "r-estimability") - (version "1.5") + (version "1.5.1") (source (origin (method url-fetch) (uri (cran-uri "estimability" version)) (sha256 (base32 - "0s6w8vnq0jc136d2mpf6pgg45rbxccrlsgdy89pgksnbaxhmyb5k")))) + "1sa42rczhzfj0dkn8v1pq6b752rh6h7x553gcgl7g27x75mbk9iw")))) (build-system r-build-system) (native-inputs (list r-knitr)) (home-page "https://cran.r-project.org/web/packages/estimability") @@ -1194,14 +1194,14 @@ solution for sending email, including attachments, from within R.") (define-public r-stringi (package (name "r-stringi") - (version "1.8.3") + (version "1.8.4") (source (origin (method url-fetch) (uri (cran-uri "stringi" version)) (sha256 (base32 - "09a964g8q3iphq24ln9c9g5158ynr75pfh3ghddarn0xvn7bw0hn")))) + "1wv9qqxl84l44kpvkx0lmyciinrh9pa5512jm56gsaqs9pvgh6f2")))) (build-system r-build-system) (inputs (list icu4c)) (native-inputs (list pkg-config)) @@ -1268,13 +1268,13 @@ using just two functions: melt and dcast (or acast).") (define-public r-ggplot2 (package (name "r-ggplot2") - (version "3.5.0") + (version "3.5.1") (source (origin (method url-fetch) (uri (cran-uri "ggplot2" version)) (sha256 - (base32 "1qlh231dwsa7j0pzlw6xdm68d7r0v64916p66bg9lh1dw3a1ryh7")))) + (base32 "08a72kizg42mdm35170fnpn8l6r4n3j1yvbgiq1k8dlvz4jb8n3w")))) (build-system r-build-system) (propagated-inputs (list r-cli @@ -1768,13 +1768,13 @@ R packages that praise their users.") (define-public r-testthat (package (name "r-testthat") - (version "3.2.1") + (version "3.2.1.1") (source (origin (method url-fetch) (uri (cran-uri "testthat" version)) (sha256 (base32 - "1ba80zk9jzs91xl82bykhrvvgamfvp1h189rfq099h813dhhx60x")))) + "1xz94i0r62lslyqya8gz6i2r100wi26y5c2822v2i7lkflwwx1fp")))) (build-system r-build-system) (propagated-inputs (list r-brio @@ -2359,6 +2359,12 @@ building design matrices.") (base32 "13kgyqk1hp603n9zym835kp1pqs83k0j7ymayw4fk0zx4z1nmvdx")))) (build-system pyproject-build-system) + ;; See https://github.com/scikit-learn-contrib/MAPIE/issues/432 + (arguments + (list + #:test-flags + '(list "-k" (string-append "not test_correct_results" + " and not test_correct_results_binary")))) (native-inputs (list python-pandas python-pytest)) (propagated-inputs (list python-numpy python-scikit-learn)) (home-page "https://github.com/scikit-learn-contrib/MAPIE") @@ -2894,14 +2900,14 @@ collation, and NAMESPACE files.") (define-public r-openssl (package (name "r-openssl") - (version "2.1.1") + (version "2.1.2") (source (origin (method url-fetch) (uri (cran-uri "openssl" version)) (sha256 (base32 - "1p2bnr4z4vx3yqq5isqb3z4d9vg2isiz8i0h3vxdb5ramzwjd9zs")))) + "0mm0rlf3m6wkvz5p8prxwjr37rn30lmhddsdi4ffnsmrysfl3rbp")))) (properties `((upstream-name . "openssl") (updater-extra-inputs . ("openssl")))) @@ -3184,13 +3190,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.12.8.2.0") + (version "0.12.8.3.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "0w1c0mpqqf6m2gk4221kjxx299bs4qpxn867fgnkpg69kj3mh8gd")))) + "02sj42apznls45sapiisaggfijdvg69a2ja2mz4fraqaajrkkwc7")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) (propagated-inputs @@ -3311,13 +3317,13 @@ variety of formats.") (define-public r-gtable (package (name "r-gtable") - (version "0.3.4") + (version "0.3.5") (source (origin (method url-fetch) (uri (cran-uri "gtable" version)) (sha256 (base32 - "0xvrkhcv1896mf3n43mva2mrmk0d8np7sjrykpg1pv54f69h6ckh")))) + "0wpavsypw2yp0pklmqw0qcwsh8smx5gr2kkxmgdmm52r0fiw37xi")))) (properties `((upstream-name . "gtable"))) (build-system r-build-system) (propagated-inputs @@ -3589,14 +3595,14 @@ statements.") (define-public r-segmented (package (name "r-segmented") - (version "2.0-3") + (version "2.0-4") (source (origin (method url-fetch) (uri (cran-uri "segmented" version)) (sha256 (base32 - "1f89v6zbxwl6yhx3qi7wrr3rndnxfwaf49mygw357f7cf3i8ma77")))) + "0a7qfs83kgn7g98kiwlk8zm2q9pzgkvmms9l15sgc5y952yig926")))) (build-system r-build-system) (propagated-inputs (list r-mass r-nlme)) (home-page "https://cran.r-project.org/web/packages/segmented") @@ -4456,13 +4462,13 @@ t-probabilities, quantiles, random deviates and densities.") (define-public r-matrixstats (package (name "r-matrixstats") - (version "1.2.0") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "matrixStats" version)) (sha256 (base32 - "0ws5lmzqm42vrn5791l21zr05l78x0xi6b89jw0gi0vjb4pc20z4")))) + "0ni4jgw3jfbwakzrcz6jcjr1zsnaq924jz2a9d8kq92vv43ycgj1")))) (properties `((upstream-name . "matrixStats"))) (build-system r-build-system) (arguments @@ -5064,14 +5070,14 @@ existing packages provide.") (define-public r-sfsmisc (package (name "r-sfsmisc") - (version "1.1-17") + (version "1.1-18") (source (origin (method url-fetch) (uri (cran-uri "sfsmisc" version)) (sha256 (base32 - "06ih8zljs57scy7jfnv32yxijgv1i60vggmlyyblwnff6mr2fm60")))) + "1bc3qjnh3k4ia7w2sdbawr4rp8w9pmcbzbdjg7qbiwmpx6h2w19k")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/sfsmisc") (synopsis "Utilities from \"Seminar fuer Statistik\" ETH Zurich") @@ -5559,14 +5565,14 @@ forest of trees using random inputs, for classification and regression.") (define-public r-diptest (package (name "r-diptest") - (version "0.77-0") + (version "0.77-1") (source (origin (method url-fetch) (uri (cran-uri "diptest" version)) (sha256 (base32 - "0cnaz1akl86vg5p0g4yl4r66407dxssfki130rrwxpbbbqakbj63")))) + "04r8c6xy5vympxaxmgnjib4pqh97f9k6b43i66qhzkl3yh0awki2")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/diptest") (synopsis "Hartigan's dip test statistic for unimodality") @@ -5623,14 +5629,14 @@ models, generalized linear models and model-based clustering.") (define-public r-mclust (package (name "r-mclust") - (version "6.1") + (version "6.1.1") (source (origin (method url-fetch) (uri (cran-uri "mclust" version)) (sha256 (base32 - "0mchdxkc3y0v6dw8fzjnlqd6f3zrafm3xf1c53s6ps529b66kx2x")))) + "0xb726ssy224mzfg37nq5hffkdwi2hwjp1y9gwngk9vfbs703myx")))) (build-system r-build-system) (native-inputs (list gfortran r-knitr)) @@ -5833,14 +5839,14 @@ of the points.") (define-public r-fpc (package (name "r-fpc") - (version "2.2-11") + (version "2.2-12") (source (origin (method url-fetch) (uri (cran-uri "fpc" version)) (sha256 (base32 - "06j1dzlf96qcaiqg8m5iah9rmwdppky04xjhs8k4rh0k12wr0mc2")))) + "11s7211mnb9c72061mrcdfdwfph6nmbwcnpjgl32i2p7qys9cnam")))) (build-system r-build-system) (propagated-inputs (list r-class @@ -6060,14 +6066,14 @@ algorithms.") (define-public r-lme4 (package (name "r-lme4") - (version "1.1-35.2") + (version "1.1-35.3") (source (origin (method url-fetch) (uri (cran-uri "lme4" version)) (sha256 (base32 - "0nvvkvpasna9hy0y3fxd4fy2b2gxzgdga9kmxvli59dlkdy28ipc")))) + "0ij37wly0d28x143xdkjry5jsj4chlbli2fl9zbp8fkcgh95r1xl")))) (build-system r-build-system) (propagated-inputs (list r-boot @@ -6290,18 +6296,18 @@ multivariate case.") (define-public r-tclust (package (name "r-tclust") - (version "1.5-6") + (version "2.0-4") (source (origin (method url-fetch) (uri (cran-uri "tclust" version)) (sha256 (base32 - "1p7y58mklcwq76msh1q8pm2v6v19ja6fy07xg1j07d2zw2wa0phy")))) + "0y05aqpmal7ky33hs8n1phai94d7f48ich43jvy4m5wbfxkp2rm6")))) (build-system r-build-system) ;; These are all suggested packages, not build dependencies. (propagated-inputs - (list r-cluster r-mclust r-mvtnorm r-sn)) + (list r-doparallel r-foreach r-mass r-rcpp r-rcpparmadillo)) (home-page "https://cran.r-project.org/web/packages/tclust") (synopsis "Robust trimmed clustering") (description @@ -6907,6 +6913,8 @@ Java package that provides routines for various statistical distributions.") (disable-tests (list "test/ess-test-inf.el" "test/ess-test-r.el") ("ess--derive-connection-path" + ;; Looks like an off-by-one error. + "ess--command-browser-unscoped-essr" "ess-eval-line-test" "ess-eval-region-test" "ess-mock-remote-process" @@ -7201,14 +7209,14 @@ or eta squared effect size.") (define-public r-logspline (package (name "r-logspline") - (version "2.1.21") + (version "2.1.22") (source (origin (method url-fetch) (uri (cran-uri "logspline" version)) (sha256 (base32 - "0xqbk3h28gkx3haj7hdg314616x673cmg9ia148g0q9j3zqkqflf")))) + "00pdcfj1hmafxzs7gqw3n072p6pxp9hvsdm062n0xkiby6igffkp")))) (properties `((upstream-name . "logspline"))) (build-system r-build-system) (native-inputs (list gfortran)) @@ -7503,20 +7511,26 @@ Calculates confidence intervals for the difference in proportion.") (base32 "16qbm1l1281yj1cg6fp8xgd8xdshpz9a09f0b9cyimsjbm01c2j7")))) (properties `((upstream-name . "DescTools"))) (build-system r-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (add-before 'check 'pre-check + (lambda _ (setenv "HOME" "/tmp")))))) (propagated-inputs - (list r-boot - r-cli - r-data-table - r-exact - r-expm - r-gld - r-httr - r-mass - r-mvtnorm - r-rcpp - r-readxl - r-rstudioapi - r-withr)) + (list r-boot + r-cli + r-data-table + r-exact + r-expm + r-gld + r-httr + r-mass + r-mvtnorm + r-rcpp + r-readxl + r-rstudioapi + r-withr)) (native-inputs (list gfortran r-r-rsp)) (home-page "https://andrisignorell.github.io/DescTools/") (synopsis "Tools for Descriptive Statistics") |