summaryrefslogtreecommitdiff
path: root/gnu/packages
diff options
context:
space:
mode:
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioinformatics.scm311
-rw-r--r--gnu/packages/ccache.scm10
-rw-r--r--gnu/packages/check.scm17
-rw-r--r--gnu/packages/compression.scm17
-rw-r--r--gnu/packages/cran.scm143
-rw-r--r--gnu/packages/crypto.scm14
-rw-r--r--gnu/packages/emacs.scm9
-rw-r--r--gnu/packages/embedded.scm5
-rw-r--r--gnu/packages/golang.scm4
-rw-r--r--gnu/packages/haskell-check.scm145
-rw-r--r--gnu/packages/haskell-crypto.scm22
-rw-r--r--gnu/packages/haskell-web.scm93
-rw-r--r--gnu/packages/haskell.scm1388
-rw-r--r--gnu/packages/kde-frameworks.scm51
-rw-r--r--gnu/packages/libcanberra.scm6
-rw-r--r--gnu/packages/libreoffice.scm70
-rw-r--r--gnu/packages/libusb.scm4
-rw-r--r--gnu/packages/linux.scm18
-rw-r--r--gnu/packages/maths.scm10
-rw-r--r--gnu/packages/patches/mpv-CVE-2018-6360-1.patch138
-rw-r--r--gnu/packages/patches/mpv-CVE-2018-6360-2.patch59
-rw-r--r--gnu/packages/patches/mpv-CVE-2018-6360-3.patch84
-rw-r--r--gnu/packages/statistics.scm194
-rw-r--r--gnu/packages/version-control.scm12
-rw-r--r--gnu/packages/video.scm9
-rw-r--r--gnu/packages/vim.scm4
-rw-r--r--gnu/packages/w3m.scm6
-rw-r--r--gnu/packages/web.scm57
-rw-r--r--gnu/packages/xml.scm123
29 files changed, 2069 insertions, 954 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b9b0dad9d7..0fd97b691e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6,7 +6,7 @@
;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
;;; Copyright © 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Marius Bakke <mbakke@fastmail.com>
-;;; Copyright © 2016 Raoul Bonnal <ilpuccio.febo@gmail.com>
+;;; Copyright © 2016, 2018 Raoul Bonnal <ilpuccio.febo@gmail.com>
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
;;;
@@ -5849,14 +5849,14 @@ information as possible.")
(define-public r-vegan
(package
(name "r-vegan")
- (version "2.4-5")
+ (version "2.4-6")
(source
(origin
(method url-fetch)
(uri (cran-uri "vegan" version))
(sha256
(base32
- "0cyyvn3xsjn24w590jn6z4xajafv7yzvj6c51vqi9q6m8v5831ya"))))
+ "175mqr42mmxy98gpf3rky8alnkw3w1k90ggdw3cispl36841p76w"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
@@ -6673,19 +6673,21 @@ also known as views, in a controlled vocabulary.")
(define-public r-bookdown
(package
(name "r-bookdown")
- (version "0.5")
+ (version "0.6")
(source (origin
(method url-fetch)
(uri (cran-uri "bookdown" version))
(sha256
(base32
- "0zm63kr4f4kja4qpwkzl119zzyciqj7ihajfqgfjpgb4dzaiycxp"))))
+ "1pxxln42kvzl38fjprg6hcnyh1kij75fpj70vwp5hp5il813aszc"))))
(build-system r-build-system)
(propagated-inputs
`(("r-htmltools" ,r-htmltools)
("r-knitr" ,r-knitr)
("r-rmarkdown" ,r-rmarkdown)
- ("r-yaml" ,r-yaml)))
+ ("r-yaml" ,r-yaml)
+ ("r-xfun" ,r-xfun)
+ ("ghc-pandoc" ,ghc-pandoc)))
(home-page "https://github.com/rstudio/bookdown")
(synopsis "Authoring books and technical documents with R markdown")
(description "This package provides output formats and utilities for
@@ -6965,13 +6967,13 @@ names in their natural, rather than lexicographic, order.")
(define-public r-edger
(package
(name "r-edger")
- (version "3.20.2")
+ (version "3.20.8")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "edgeR" version))
(sha256
(base32
- "0j5s3i33qmld9l7gs1rzpv601zxyqz711x8mq35hml088c8s99w9"))))
+ "0g7bj6w61blw3m22hw9rc01n554k9qkjizh7njr3j4shmhads58d"))))
(properties `((upstream-name . "edgeR")))
(build-system r-build-system)
(propagated-inputs
@@ -6993,13 +6995,13 @@ CAGE.")
(define-public r-variantannotation
(package
(name "r-variantannotation")
- (version "1.24.2")
+ (version "1.24.5")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "VariantAnnotation" version))
(sha256
(base32
- "19wgb2kcqy97pm3xgqc781id9fbmzp1hdwzkkhdzpvyf29w4n29j"))))
+ "07ywn3c4w83l3sr76d0z3b1nv9icgdh3phsjlc6cfx7i6nfmvxw2"))))
(properties
`((upstream-name . "VariantAnnotation")))
(inputs
@@ -7031,13 +7033,13 @@ coding changes and predict coding outcomes.")
(define-public r-limma
(package
(name "r-limma")
- (version "3.34.4")
+ (version "3.34.8")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "limma" version))
(sha256
(base32
- "1vcxf9jg8xngxg5kb9bp8rw5sghpnkpj320iq309m2fp41ahsk3f"))))
+ "0bmxsgz2yll83sd3wbxsrsfd35468igb0d8lldym0d0lqfz906bw"))))
(build-system r-build-system)
(home-page "http://bioinf.wehi.edu.au/limma")
(synopsis "Package for linear models for microarray and RNA-seq data")
@@ -7086,13 +7088,13 @@ different technologies, including microarrays, RNA-seq, and quantitative PCR.")
(define-public r-genomicranges
(package
(name "r-genomicranges")
- (version "1.30.0")
+ (version "1.30.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "GenomicRanges" version))
(sha256
(base32
- "10ra2sjn17h6gilm9iz0cygp9ijpgbirljlc4drwrnivnw9cmi2a"))))
+ "1wnvvhj8yjsx242y6kfr5vs8kzisa96rxl1rgnnychrrvnvnh3i1"))))
(properties
`((upstream-name . "GenomicRanges")))
(build-system r-build-system)
@@ -7164,13 +7166,13 @@ annotation data packages using SQLite data storage.")
(define-public r-biomart
(package
(name "r-biomart")
- (version "2.34.1")
+ (version "2.34.2")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "biomaRt" version))
(sha256
(base32
- "0jzv8b86vpvavwnzi5xf7y18xmn72zkabkn2kclg1mgl847cq13k"))))
+ "1zlgs2zg0lmnk572p55n7m34nkxka8w10x8f2ndssjkffl2csy79"))))
(properties
`((upstream-name . "biomaRt")))
(build-system r-build-system)
@@ -7322,13 +7324,13 @@ array-like objects like @code{DataFrame} objects (typically with Rle columns),
(define-public r-summarizedexperiment
(package
(name "r-summarizedexperiment")
- (version "1.8.0")
+ (version "1.8.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "SummarizedExperiment" version))
(sha256
(base32
- "1011r8l0k8420j31bmh4xdcp6ka5bzf4bqhip84v5b6alpkcbvmf"))))
+ "19vlwnby83fqjrilsxvnvgz0gvby7mrxvlmx18nb3p1w591ddfjh"))))
(properties
`((upstream-name . "SummarizedExperiment")))
(build-system r-build-system)
@@ -7386,13 +7388,13 @@ alignments.")
(define-public r-rtracklayer
(package
(name "r-rtracklayer")
- (version "1.38.2")
+ (version "1.38.3")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "rtracklayer" version))
(sha256
(base32
- "1sjn3976f1sqvrq6jq2hgc60ffxgfr3jlklaxfrk3xad5cv2kr2d"))))
+ "1khzfczm35k5lq9h0jlqrq01192spzjyh8s6is89spj006flwn4k"))))
(build-system r-build-system)
(arguments
`(#:phases
@@ -7431,13 +7433,13 @@ as well as query and modify the browser state, such as the current viewport.")
(define-public r-genomicfeatures
(package
(name "r-genomicfeatures")
- (version "1.30.0")
+ (version "1.30.3")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "GenomicFeatures" version))
(sha256
(base32
- "1khjvq1ffhqavkwf8n7bilknci60lxbg52icrcf2vnb9k8rlpghs"))))
+ "010vn8hlwbnw12pd1d8pv6m12yp3xwx557gba5rbjq9p4qypnn3z"))))
(properties
`((upstream-name . "GenomicFeatures")))
(build-system r-build-system)
@@ -7657,13 +7659,13 @@ reference point and sorted by a user defined feature.")
(define-public r-genomation
(package
(name "r-genomation")
- (version "1.10.0")
+ (version "1.11.3")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "genomation" version))
(sha256
(base32
- "1ddd8c9w1f1i1ga9rpbwiic8rsaws1chdxx4j38bpyaiy4zhz1ca"))))
+ "1d2g1v6xhrf3gm86pv8ln22df5g6v6k6i4i39v4j82zn4apany6v"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biostrings" ,r-biostrings)
@@ -8362,14 +8364,14 @@ in SNV base substitution data.")
(define-public r-wgcna
(package
(name "r-wgcna")
- (version "1.61")
+ (version "1.62")
(source
(origin
(method url-fetch)
(uri (cran-uri "WGCNA" version))
(sha256
(base32
- "1vrc2k33a196hrrl7k0z534fp96vv0shmigcr65ny1q0v6lq0h6i"))))
+ "0c52rp09gqphz6g5x9jzkdcsyvfrknq0dkq9saslgy8q8ap974vx"))))
(properties `((upstream-name . "WGCNA")))
(build-system r-build-system)
(propagated-inputs
@@ -8467,14 +8469,14 @@ factors bound at the specific regions.")
(define-public r-gkmsvm
(package
(name "r-gkmsvm")
- (version "0.71.0")
+ (version "0.79.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "gkmSVM" version))
(sha256
(base32
- "1zpxgxmf2nd5j5wn00ps6kfxr8wxh7d1swr1rr4spq7sj5z5z0k0"))))
+ "04dakbgfvfalz4rm4fvvybp506dn5fbj5g86ybfhrc6wywjllsz3"))))
(properties `((upstream-name . "gkmSVM")))
(build-system r-build-system)
(propagated-inputs
@@ -8941,13 +8943,13 @@ number detection tools.")
(define-public r-methylkit
(package
(name "r-methylkit")
- (version "1.4.0")
+ (version "1.4.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "methylKit" version))
(sha256
(base32
- "0h53w2mrjrg2n0ndi12k9j6cwclgwcgpy25nz7nyj971aisw02xn"))))
+ "1k0nfn9318sgwm4z963bhnbp4c3zv85v3f9886vc5hgaisr0yvai"))))
(properties `((upstream-name . "methylKit")))
(build-system r-build-system)
(propagated-inputs
@@ -9311,14 +9313,14 @@ structure (pcaRes) to provide a common interface to the PCA results.")
(define-public r-msnbase
(package
(name "r-msnbase")
- (version "2.4.0")
+ (version "2.4.2")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "MSnbase" version))
(sha256
(base32
- "0dqfimljhrx3gac8d1k72gppx27lz8yckyb12v4604nbviw7xd3r"))))
+ "1ig64bf881p118dwqfr0ry41m7yhnyv165smv8fdwfv7sb6sagif"))))
(properties `((upstream-name . "MSnbase")))
(build-system r-build-system)
(propagated-inputs
@@ -9391,13 +9393,13 @@ and irregular enzymatic cleavages, mass measurement accuracy, etc.")
(define-public r-seurat
(package
(name "r-seurat")
- (version "2.1.0")
+ (version "2.2.0")
(source (origin
(method url-fetch)
(uri (cran-uri "Seurat" version))
(sha256
(base32
- "1hqaq6bciikrsyw157w8fn4jw885air7xbkxrmism93rp4qx483x"))
+ "1yarzhbylkfk4vwp7f8710zpdglkfww2db3hmq69hjllgg80ykmw"))
;; Delete pre-built jar.
(snippet
'(begin (delete-file "inst/java/ModularityOptimizer.jar")
@@ -9434,8 +9436,8 @@ Main-Class: ModularityOptimizer\n")))
("r-fnn" ,r-fnn)
("r-fpc" ,r-fpc)
("r-gdata" ,r-gdata)
- ("r-ggjoy" ,r-ggjoy)
("r-ggplot2" ,r-ggplot2)
+ ("r-ggridges" ,r-ggridges)
("r-gplots" ,r-gplots)
("r-gridextra" ,r-gridextra)
("r-hmisc" ,r-hmisc)
@@ -9452,6 +9454,7 @@ Main-Class: ModularityOptimizer\n")))
("r-ranger" ,r-ranger)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rcpp" ,r-rcpp)
+ ("r-rcppeigen" ,r-rcppeigen)
("r-rcppprogress" ,r-rcppprogress)
("r-reshape2" ,r-reshape2)
("r-rocr" ,r-rocr)
@@ -9661,14 +9664,14 @@ microarrays or GRanges for sequencing data.")
(define-public r-keggrest
(package
(name "r-keggrest")
- (version "1.18.0")
+ (version "1.18.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "KEGGREST" version))
(sha256
(base32
- "1i3i88lj57wvpgjf75a23msgfsjv8pr2b4j1faga276p4fsblkhj"))))
+ "02gwmm79djj55a90dzc80hlgwc6bafl7xd7fnx2q59pk945k3z9c"))))
(properties `((upstream-name . "KEGGREST")))
(build-system r-build-system)
(propagated-inputs
@@ -9685,14 +9688,14 @@ microarrays or GRanges for sequencing data.")
(define-public r-gage
(package
(name "r-gage")
- (version "2.28.0")
+ (version "2.28.2")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "gage" version))
(sha256
(base32
- "1r14p88q3y736pkqm4pdimf1izy1xy3xgivmj3cr4dv65kjny1zk"))))
+ "0h0mlhns9j7cpfksvdlvx9jb7szm3r1dwqb3s4s8p8hmkb9byyii"))))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
@@ -9806,14 +9809,14 @@ originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7(2):
(define-public r-ensembldb
(package
(name "r-ensembldb")
- (version "2.2.0")
+ (version "2.2.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "ensembldb" version))
(sha256
(base32
- "1w0lca3ws5j770bmls91cn93lznvv2pc8s42nybdzz3vdxjvb4m1"))))
+ "1vk6j0r5cczxmwbfzzkgayna66rxkfa3q2jikz649qvdiybhls40"))))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
@@ -9975,14 +9978,14 @@ interval to data view, mismatch pileup, and several splicing summaries.")
(define-public r-gprofiler
(package
(name "r-gprofiler")
- (version "0.6.1")
+ (version "0.6.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "gProfileR" version))
(sha256
(base32
- "1qix15d0wa9nspdclcawml94mng4qmr2jciv7d24py315wfsvv8p"))))
+ "08dsnja3g8qvqlgwhx9c9f8p8psn3qr5ddn84dhizkgglj30v2wj"))))
(properties `((upstream-name . "gProfileR")))
(build-system r-build-system)
(propagated-inputs
@@ -10401,6 +10404,228 @@ problems in genomics, brain imaging, astrophysics, and data mining.")
;; Any version of the LGPL.
(license license:lgpl3+)))
+(define-public r-hdf5array
+ (package
+ (name "r-hdf5array")
+ (version "1.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "HDF5Array" version))
+ (sha256
+ (base32
+ "0kcdza41saqv6vlpvqd841awbiwkg84lh0plx6c7fmfgbqv7a0jh"))))
+ (properties `((upstream-name . "HDF5Array")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-delayedarray" ,r-delayedarray)
+ ("r-iranges" ,r-iranges)
+ ("r-rhdf5" ,r-rhdf5)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://bioconductor.org/packages/HDF5Array")
+ (synopsis "HDF5 back end for DelayedArray objects")
+ (description "This package provides an array-like container for convenient
+access and manipulation of HDF5 datasets. It supports delayed operations and
+block processing.")
+ (license license:artistic2.0)))
+
+(define-public r-rhdf5lib
+ (package
+ (name "r-rhdf5lib")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Rhdf5lib" version))
+ (sha256
+ (base32
+ "0kkc4rprjbqn2wvbx4d49kk9l91vihccxbl4843qr1wqk6v33r1w"))))
+ (properties `((upstream-name . "Rhdf5lib")))
+ (build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'do-not-use-bundled-hdf5
+ (lambda* (#:key inputs #:allow-other-keys)
+ (for-each delete-file '("configure" "configure.ac"))
+ ;; Do not make other packages link with the proprietary libsz.
+ (substitute* "R/zzz.R"
+ (("'%s/libhdf5_cpp.a %s/libhdf5.a %s/libsz.a'")
+ "'%s/libhdf5_cpp.a %s/libhdf5.a %s/libhdf5.a'")
+ (("'%s/libhdf5.a %s/libsz.a'")
+ "'%s/libhdf5.a %s/libhdf5.a'"))
+ (with-directory-excursion "src"
+ (invoke "tar" "xvf" (assoc-ref inputs "hdf5-source"))
+ (rename-file (string-append "hdf5-" ,(package-version hdf5))
+ "hdf5")
+ (rename-file "Makevars.in" "Makevars")
+ (substitute* "Makevars"
+ (("HDF5_CXX_LIB=.*")
+ (string-append "HDF5_CXX_LIB="
+ (assoc-ref inputs "hdf5") "/lib/libhdf5_cpp.a\n"))
+ (("HDF5_LIB=.*")
+ (string-append "HDF5_LIB="
+ (assoc-ref inputs "hdf5") "/lib/libhdf5.a\n"))
+ (("HDF5_CXX_INCLUDE=.*") "HDF5_CXX_INCLUDE=./hdf5/c++/src\n")
+ (("HDF5_INCLUDE=.*") "HDF5_INCLUDE=./hdf5/src\n")
+ ;; szip is non-free software
+ (("cp \\$\\{SZIP_LIB\\}.*") "")
+ (("PKG_LIBS = \\$\\{HDF5_LIB\\} \\$\\{SZIP_LIB\\}")
+ "PKG_LIBS = ${HDF5_LIB}\n")))
+ #t)))))
+ (inputs
+ `(("zlib" ,zlib)))
+ (propagated-inputs
+ `(("hdf5" ,hdf5)))
+ (native-inputs
+ `(("hdf5-source" ,(package-source hdf5))))
+ (home-page "https://bioconductor.org/packages/Rhdf5lib")
+ (synopsis "HDF5 library as an R package")
+ (description "This package provides C and C++ HDF5 libraries for use in R
+packages.")
+ (license license:artistic2.0)))
+
+(define-public r-beachmat
+ (package
+ (name "r-beachmat")
+ (version "1.0.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "beachmat" version))
+ (sha256
+ (base32
+ "0b6dzja5fbx4dawb7ixj67mlhw4fy62pfp20mfp918fy96zmdwqz"))))
+ (build-system r-build-system)
+ (inputs
+ `(("hdf5" ,hdf5)))
+ (propagated-inputs
+ `(("r-delayedarray" ,r-delayedarray)
+ ("r-hdf5array" ,r-hdf5array)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rhdf5" ,r-rhdf5)
+ ("r-rhdf5lib" ,r-rhdf5lib)))
+ (home-page "https://bioconductor.org/packages/beachmat")
+ (synopsis "Compiling Bioconductor to handle each matrix type")
+ (description "This package provides a consistent C++ class interface for a
+variety of commonly used matrix types, including sparse and HDF5-backed
+matrices.")
+ (license license:gpl3)))
+
+(define-public r-singlecellexperiment
+ (package
+ (name "r-singlecellexperiment")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "SingleCellExperiment" version))
+ (sha256
+ (base32
+ "1r276i97w64a5vdlg6952gkj7bls909p42zl8fn8yz87cdwyaars"))))
+ (properties
+ `((upstream-name . "SingleCellExperiment")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (home-page "https://bioconductor.org/packages/SingleCellExperiment")
+ (synopsis "S4 classes for single cell data")
+ (description "This package defines an S4 class for storing data from
+single-cell experiments. This includes specialized methods to store and
+retrieve spike-in information, dimensionality reduction coordinates and size
+factors for each cell, along with the usual metadata for genes and
+libraries.")
+ (license license:gpl3)))
+
+(define-public r-scater
+ (package
+ (name "r-scater")
+ (version "1.6.2")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "scater" version))
+ (sha256
+ (base32
+ "0fp68n0xnbf90wrprqawsbilg9x7v2scp0dxb3936g20025csrdd"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-beachmat" ,r-beachmat)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biomart" ,r-biomart)
+ ("r-data-table" ,r-data-table)
+ ("r-dplyr" ,r-dplyr)
+ ("r-edger" ,r-edger)
+ ("r-ggbeeswarm" ,r-ggbeeswarm)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-limma" ,r-limma)
+ ("r-matrix" ,r-matrix)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-plyr" ,r-plyr)
+ ("r-rcpp" ,r-rcpp)
+ ("r-reshape2" ,r-reshape2)
+ ("r-rhdf5" ,r-rhdf5)
+ ("r-rhdf5lib" ,r-rhdf5lib)
+ ("r-rjson" ,r-rjson)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-shiny" ,r-shiny)
+ ("r-shinydashboard" ,r-shinydashboard)
+ ("r-singlecellexperiment" ,r-singlecellexperiment)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-tximport" ,r-tximport)
+ ("r-viridis" ,r-viridis)))
+ (home-page "https://github.com/davismcc/scater")
+ (synopsis "Single-cell analysis toolkit for gene expression data in R")
+ (description "This package provides a collection of tools for doing
+various analyses of single-cell RNA-seq gene expression data, with a focus on
+quality control.")
+ (license license:gpl2+)))
+
+(define-public r-scran
+ (package
+ (name "r-scran")
+ (version "1.6.7")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "scran" version))
+ (sha256
+ (base32
+ "0zfm5i8xrnzb3894xygqd6zkbwaa2x3z74wbxw39fcjhyhxv2hmb"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-beachmat" ,r-beachmat)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-dt" ,r-dt)
+ ("r-dynamictreecut" ,r-dynamictreecut)
+ ("r-edger" ,r-edger)
+ ("r-fnn" ,r-fnn)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-igraph" ,r-igraph)
+ ("r-limma" ,r-limma)
+ ("r-matrix" ,r-matrix)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rhdf5lib" ,r-rhdf5lib)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-scater" ,r-scater)
+ ("r-shiny" ,r-shiny)
+ ("r-singlecellexperiment" ,r-singlecellexperiment)
+ ("r-statmod" ,r-statmod)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-viridis" ,r-viridis)
+ ("r-zoo" ,r-zoo)))
+ (home-page "https://bioconductor.org/packages/scran")
+ (synopsis "Methods for single-cell RNA-Seq data analysis")
+ (description "This package implements a variety of low-level analyses of
+single-cell RNA-seq data. Methods are provided for normalization of
+cell-specific biases, assignment of cell cycle phase, and detection of highly
+variable and significantly correlated genes.")
+ (license license:gpl3)))
+
(define htslib-for-sambamba
(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
(package
diff --git a/gnu/packages/ccache.scm b/gnu/packages/ccache.scm
index 82e1901aaf..5c1214506a 100644
--- a/gnu/packages/ccache.scm
+++ b/gnu/packages/ccache.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014, 2015, 2016 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2014, 2015, 2016, 2018 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
@@ -30,7 +30,7 @@
(define-public ccache
(package
(name "ccache")
- (version "3.3.5")
+ (version "3.4")
(source
(origin
(method url-fetch)
@@ -38,7 +38,7 @@
version ".tar.xz"))
(sha256
(base32
- "1iih5d171rq29366c1z90dri2h8173yyc8rm2740wxiqx6k7c18r"))))
+ "0sfisvjs2iham29flxgmnfg7kzqz66bhk6q0qcwbdv1n569say5j"))))
(build-system gnu-build-system)
(native-inputs `(("perl" ,perl) ;for test.sh
("which" ,(@ (gnu packages base) which))))
@@ -47,14 +47,14 @@
'(#:phases (modify-phases %standard-phases
(add-before 'check 'setup-tests
(lambda _
- (substitute* '("test/test_hashutil.c" "test.sh")
+ (substitute* '("unittest/test_hashutil.c" "test/suites/base.bash")
(("#!/bin/sh") (string-append "#!" (which "sh"))))
#t))
(add-before 'check 'munge-failing-test
(lambda _
;; XXX The new ‘Multiple -fdebug-prefix-map’ test added in
;; 3.3.5 fails (why?). Force it to report success instead.
- (substitute* "test.sh"
+ (substitute* "test/suites/debug_prefix_map.bash"
(("grep \"name\"") "true"))
#t)))))
(home-page "https://ccache.samba.org/")
diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 58cea4ae1b..8e1eb127b2 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -144,6 +144,23 @@ unit testing. Test output is in XML for automatic testing and GUI based for
supervised tests.")
(license license:lgpl2.1))) ; no copyright notices. LGPL2.1 is in the tarball
+;; Some packages require this newer version of cppunit. However, it needs
+;; C++11 support, which is not enabled by default in our current GCC, and
+;; updating in-place would require adding CXXFLAGS to many dependent packages.
+;; Thus, keep as a separate variable for now.
+;; TODO: Remove this when our default GCC is updated to 6 or higher.
+(define-public cppunit-1.14
+ (package
+ (inherit cppunit)
+ (version "1.14.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://dev-www.libreoffice.org/src/"
+ "cppunit-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1027cyfx5gsjkdkaf6c2wnjh68882grw8n672018cj3vs9lrhmix"))))))
+
(define-public catch-framework
(package
(name "catch")
diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index 86dc809adb..3bf2ec1617 100644
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@ -5,7 +5,7 @@
;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
;;; Copyright © 2015, 2016 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
-;;; Copyright © 2015, 2017 Leo Famulari <leo@famulari.name>
+;;; Copyright © 2015, 2017, 2018 Leo Famulari <leo@famulari.name>
;;; Copyright © 2015 Jeff Mickey <j@codemac.net>
;;; Copyright © 2015, 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
@@ -1728,6 +1728,7 @@ Compression ratios of 2:1 to 3:1 are common for text files.")
(define-public unzip
(package (inherit zip)
(name "unzip")
+ (replacement unzip/fixed)
(version "6.0")
(source
(origin
@@ -1778,6 +1779,20 @@ recreates the stored directory structure by default.")
(license (license:non-copyleft "file://LICENSE"
"See LICENSE in the distribution."))))
+(define unzip/fixed
+ (package/inherit unzip
+ (arguments
+ (substitute-keyword-arguments (package-arguments unzip)
+ ((#:phases phases)
+ `(modify-phases ,phases
+ (add-after 'unpack 'fortify
+ (lambda _
+ ;; Mitigate CVE-2018-1000035, an exploitable buffer overflow.
+ ;; This environment variable is recommended in 'unix/Makefile'
+ ;; for passing flags to the C compiler.
+ (setenv "LOCAL_UNZIP" "-D_FORTIFY_SOURCE=1")
+ #t))))))))
+
(define-public zziplib
(package
(name "zziplib")
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 95e0faf2a0..603d231a04 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -95,13 +95,13 @@ error stream.")
(define-public r-rcpp
(package
(name "r-rcpp")
- (version "0.12.14")
+ (version "0.12.15")
(source
(origin
(method url-fetch)
(uri (cran-uri "Rcpp" version))
(sha256
- (base32 "0qvyxggddyg87lza45hjl0a2prabdyshkqzkz418vi777zygqa6s"))))
+ (base32 "1pnv6sl4vdn69ygmgrb1b3gsigfdcfb56wnzikic93l8gkvdsvxv"))))
(build-system r-build-system)
(home-page "http://www.rcpp.org")
(synopsis "Seamless R and C++ integration")
@@ -206,14 +206,14 @@ on (non-orthogonal) variable vectors in scatterplots and biplots.")
(define-public r-shape
(package
(name "r-shape")
- (version "1.4.3")
+ (version "1.4.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "shape" version))
(sha256
(base32
- "1v9xp60p813rnx41vchkh32qmcb4z2zp9l7r1a8a6f8aqylnq3vj"))))
+ "0hadk3mapkhbh8xjkiz52vxdagmmgvm15xwpzb90ikw4giyipjzl"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/shape")
(synopsis "Functions for plotting graphical shapes")
@@ -321,14 +321,14 @@ rows, dropping names) to see if the modified versions are identical.")
(define-public r-dendextend
(package
(name "r-dendextend")
- (version "1.6.0")
+ (version "1.7.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "dendextend" version))
(sha256
(base32
- "0pichh08zi12lpxzc061dmv4smj6lizygd1xymln8wfz18sf7923"))))
+ "1krvqadnnh53xx5ql7bwzxaif6a317jzbs1m00gnc6jnj03rfl5d"))))
(build-system r-build-system)
(propagated-inputs
`(("r-fpc" ,r-fpc)
@@ -542,14 +542,14 @@ plot networks.")
(define-public r-proxy
(package
(name "r-proxy")
- (version "0.4-20")
+ (version "0.4-21")
(source
(origin
(method url-fetch)
(uri (cran-uri "proxy" version))
(sha256
(base32
- "15g6dacdmlbkcnimblscghl23aj732cn6qwbs583r4im9v5nvbla"))))
+ "1vih8gsfzv97h5c8ixd1qjnn02i7fzla2p9fdj2wpisqhx0p0xv0"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/proxy")
(synopsis "Distance and similarity measures")
@@ -562,14 +562,14 @@ most popular ones.")
(define-public r-sp
(package
(name "r-sp")
- (version "1.2-5")
+ (version "1.2-7")
(source
(origin
(method url-fetch)
(uri (cran-uri "sp" version))
(sha256
(base32
- "09yydnacp33yx0kn537k96fjlbf75fjafqfknpa5gvci4l888bqd"))))
+ "0q04yfgyjannsrzl0ppwcv0simrxrrbx2iz5mzaafc5x38zf0q3d"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)))
@@ -989,20 +989,44 @@ testing framework of Wald are generic and can therefore also be used in other
contexts.")
(license license:gpl2+)))
+(define-public r-squarem
+ (package
+ (name "r-squarem")
+ (version "2017.10-1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "SQUAREM" version))
+ (sha256
+ (base32
+ "10xj26x7qjyvzndnbjl5krr9wabnb9cbrnp3m7xg673g8ddr12cv"))))
+ (properties `((upstream-name . "SQUAREM")))
+ (build-system r-build-system)
+ (home-page "http://www.jhsph.edu/agingandhealth/People/Faculty_personal_pages/Varadhan.html")
+ (synopsis "Squared Extrapolation Methods for Accelerating EM-Like Monotone Algorithms")
+ (description
+ "This package provides algorithms for accelerating the convergence of
+slow, monotone sequences from smooth, contraction mapping such as the EM
+algorithm. It can be used to accelerate any smooth, linearly convergent
+acceleration scheme. A tutorial style introduction to this package is
+available in a vignette.")
+ (license license:gpl2+)))
+
(define-public r-lava
(package
(name "r-lava")
- (version "1.5.1")
+ (version "1.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "lava" version))
(sha256
(base32
- "1vcm04h9i39gmf2prl5d4j4il4gs6skzr6y2fvl1vn4hklna87f4"))))
+ "02xf5d968raz9gnq5ywy04wz29xpdyca1hm79vbbg1mcxvzdl1dz"))))
(build-system r-build-system)
(propagated-inputs
`(("r-numderiv" ,r-numderiv)
+ ("r-squarem" ,r-squarem)
("r-survival" ,r-survival)))
(home-page "https://github.com/kkholst/lava")
(synopsis "Latent variable models")
@@ -1014,14 +1038,14 @@ variable models.")
(define-public r-drr
(package
(name "r-drr")
- (version "0.0.2")
+ (version "0.0.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "DRR" version))
(sha256
(base32
- "1scfwp6ry6apxzqjclsmn2frxp9qfw6zxsxn5w0j0q3sz42hz1h2"))))
+ "1yd1fvllfkcrwg9v322n4wkk4q4q84nvy58y4vac9pdr3yf3i4vl"))))
(properties `((upstream-name . "DRR")))
(build-system r-build-system)
(propagated-inputs
@@ -1106,14 +1130,14 @@ calendar objects.")
(define-public r-ddalpha
(package
(name "r-ddalpha")
- (version "1.3.1")
+ (version "1.3.1.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "ddalpha" version))
(sha256
(base32
- "0pczw9543y7f92m7gyk7rxcjn8vsjaldc5vl0r56ywip9i374zbh"))))
+ "13w8ir5rd80rka4mq343zd4wn93vfw870lzfqrd3cxgwb1bwcw7y"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bh" ,r-bh)
@@ -1279,14 +1303,14 @@ provides a one-row summary of model-level statistics.")
(define-public r-recipes
(package
(name "r-recipes")
- (version "0.1.1")
+ (version "0.1.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "recipes" version))
(sha256
(base32
- "0id46c7iaf49miw4kxpidsbg3hdywav43n1lh2zd1vg5946bzg04"))))
+ "1car3a3mqn87pz049cbgkaayz86970mvkapk6al2k7jjw76306l9"))))
(build-system r-build-system)
(propagated-inputs
`(("r-broom" ,r-broom)
@@ -2072,3 +2096,86 @@ around the relevant area. This work is based on the @code{ggplot2} and
dendrogram panes, and the placing of factor variables in the sides of the
heatmap.")
(license (list license:gpl2 license:gpl3))))
+
+(define-public r-xfun
+ (package
+ (name "r-xfun")
+ (version "0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "xfun" version))
+ (sha256
+ (base32
+ "1sm51gmwgw876d6d1q8smxmfgfh6zsnykfx8qp8z6jmh0fvd89pj"))))
+ (build-system r-build-system)
+ (home-page "https://github.com/yihui/xfun")
+ (synopsis "Miscellaneous functions")
+ (description
+ "This package provides miscellaneous functions commonly used in other
+packages maintained by Yihui Xie.")
+ (license license:expat)))
+
+(define-public r-utf8
+ (package
+ (name "r-utf8")
+ (version "1.1.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "utf8" version))
+ (sha256
+ (base32
+ "03s4j6059q0nly68vpk6wy3p3f5ypakw93fj35kzd82b4z1r9cs3"))))
+ (build-system r-build-system)
+ (home-page "https://github.com/patperry/r-utf8")
+ (synopsis "Unicode text processing")
+ (description
+ "This package provides tools to process and print UTF-8 encoded
+international text (Unicode). Input, validate, normalize, encode, format, and
+display.")
+ (license license:asl2.0)))
+
+(define-public r-pillar
+ (package
+ (name "r-pillar")
+ (version "1.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "pillar" version))
+ (sha256
+ (base32
+ "1gh3j2pbbf5y4d5nyqnlr0x27jjyvjjspcccmw61airs1n6rx8jq"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-cli" ,r-cli)
+ ("r-crayon" ,r-crayon)
+ ("r-rlang" ,r-rlang)
+ ("r-utf8" ,r-utf8)))
+ (home-page "https://github.com/r-lib/pillar")
+ (synopsis "Coloured formatting for columns")
+ (description
+ "This package provides a @code{pillar} generic designed for formatting
+columns of data using the full range of colours provided by modern
+terminals.")
+ (license license:gpl3)))
+
+(define-public r-uuid
+ (package
+ (name "r-uuid")
+ (version "0.1-2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "uuid" version))
+ (sha256
+ (base32
+ "1gmisd630fc8ybg845hbg13wmm3pk3npaamrh5wqbc1nqd6p0wfx"))))
+ (build-system r-build-system)
+ (home-page "http://www.rforge.net/uuid")
+ (synopsis "Tools for generating and handling of UUIDs")
+ (description
+ "This package provides tools for generating and handling of
+@dfn{Universally Unique Identifiers} (UUIDs).")
+ (license license:expat)))
diff --git a/gnu/packages/crypto.scm b/gnu/packages/crypto.scm
index e616c9223f..5e5bc4de05 100644
--- a/gnu/packages/crypto.scm
+++ b/gnu/packages/crypto.scm
@@ -87,16 +87,18 @@ communication, encryption, decryption, signatures, etc.")
(define-public libmd
(package
(name "libmd")
- (version "0.0.0")
+ (version "1.0.0")
(source (origin
(method url-fetch)
- (uri (string-append
- "https://archive.hadrons.org/software/libmd/libmd-"
- version
- ".tar.xz"))
+ (uri
+ (list
+ (string-append "https://archive.hadrons.org/software/libmd/libmd-"
+ version ".tar.xz")
+ (string-append "https://libbsd.freedesktop.org/releases/libmd-"
+ version ".tar.xz")))
(sha256
(base32
- "121s73pgbqsnmy6xblbrkj9y44c5zzzpf2hcmh6zvcvg4dk26gzx"))))
+ "1iv45npzv0gncjgcpx5m081861zdqxw667ysghqb8721yrlyl6pj"))))
(build-system gnu-build-system)
(synopsis "Message Digest functions from BSD systems")
(description
diff --git a/gnu/packages/emacs.scm b/gnu/packages/emacs.scm
index d7effa4a87..7e36ceb6b4 100644
--- a/gnu/packages/emacs.scm
+++ b/gnu/packages/emacs.scm
@@ -8,7 +8,7 @@
;;; Copyright © 2016, 2017 Chris Marusich <cmmarusich@gmail.com>
;;; Copyright © 2015, 2016 Christopher Allan Webber <cwebber@dustycloud.org>
;;; Copyright © 2016 Adriano Peluso <catonano@gmail.com>
-;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 David Thompson <davet@gnu.org>
;;; Copyright © 2016 Matthew Jordan <matthewjordandevops@yandex.com>
;;; Copyright © 2016, 2017 Roel Janssen <roel@gnu.org>
@@ -280,6 +280,7 @@ editor (without an X toolkit)" )
(uri (git-reference
(url "git://git.hcoop.net/git/bpt/emacs.git")
(commit "41120e0f595b16387eebfbf731fff70481de1b4b")))
+ (file-name (string-append name "-" version "-checkout"))
(patches (search-patches "guile-emacs-fix-configure.patch"))
(sha256
(base32
@@ -957,7 +958,7 @@ light user interface.")
(define-public emacs-emms-player-mpv
(package
(name "emacs-emms-player-mpv")
- (version "0.0.10")
+ (version "0.0.13")
(source
(origin
(method url-fetch)
@@ -966,7 +967,7 @@ light user interface.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "1q81fpmwr8hpdgq71vbdai2nml4yyqbmk4ffdyl4irlwph8gfjyq"))))
+ "01i0bz7wdqzcnv5r63m9xgl07yf1nmn86dwy00rcfsn5za46y3r3"))))
(build-system emacs-build-system)
(propagated-inputs
`(("emms" ,emms)))
@@ -1621,6 +1622,7 @@ management tasks from Emacs. To begin with, run @code{M-x guix-about} or
(uri (string-append
"https://github.com/Emacs-D-Mode-Maintainers/Emacs-D-Mode/"
"archive/" version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0knpgi55jm09282aqf8pv55zillpnpzf9f4sgm6gwsmvxf17xaw0"))))
@@ -2385,6 +2387,7 @@ the speedbar window.")
(uri (git-reference
(commit "880706469338ab59b5bb7dbe8460016f89755364")
(url "https://github.com/gregsexton/ob-ipython.git")))
+ (file-name (string-append name "-" version "-checkout"))
(sha256
(base32
"1scf25snbds9ymagpny30ijbsg479r3nm0ih01dy4m9d0g7qryb7"))))
diff --git a/gnu/packages/embedded.scm b/gnu/packages/embedded.scm
index 870574ae18..b2e33ea10b 100644
--- a/gnu/packages/embedded.scm
+++ b/gnu/packages/embedded.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016, 2017 Theodoros Foradis <theodoros@foradis.org>
;;; Copyright © 2016 David Craven <david@craven.ch>
;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il>
@@ -525,6 +525,9 @@ with a layered architecture of JTAG interface and TAP support.")
`(modify-phases ,phases
(add-after 'unpack 'chdir
(lambda _ (chdir "gcc") #t))))))
+ (native-inputs
+ `(("gcc-4" ,gcc-4.9)
+ ,@(package-native-inputs propeller-gcc-6)))
(home-page "https://github.com/parallaxinc/propgcc")
(supported-systems (delete "aarch64-linux" %supported-systems)))))
diff --git a/gnu/packages/golang.scm b/gnu/packages/golang.scm
index 3149d36bae..f11cc76d9c 100644
--- a/gnu/packages/golang.scm
+++ b/gnu/packages/golang.scm
@@ -208,7 +208,7 @@ in the style of communicating sequential processes (@dfn{CSP}).")
(package
(inherit go-1.4)
(name "go")
- (version "1.9.3")
+ (version "1.9.4")
(source
(origin
(method url-fetch)
@@ -216,7 +216,7 @@ in the style of communicating sequential processes (@dfn{CSP}).")
name version ".src.tar.gz"))
(sha256
(base32
- "1bj73hrr7jjdg0w6snwkqb5y3yrlks5nrs2lgnkyy0hyx7b0lgaf"))))
+ "01nw8rfvf10naja0wq0kabsm012sbqq76hd4b8c7g28n6ggshwq5"))))
(arguments
(substitute-keyword-arguments (package-arguments go-1.4)
((#:phases phases)
diff --git a/gnu/packages/haskell-check.scm b/gnu/packages/haskell-check.scm
index d6d20218cf..8a3b8ad866 100644
--- a/gnu/packages/haskell-check.scm
+++ b/gnu/packages/haskell-check.scm
@@ -2,7 +2,7 @@
;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org>
;;; Copyright © 2015 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2015 Federico Beffa <beffa@fbengineering.ch>
-;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016 ng0 <ng0@infotropique.org>
;;; Copyright © 2016 David Craven <david@craven.ch>
;;; Copyright © 2017 Danny Milosavljevic <dannym@scratchpost.org>
@@ -180,7 +180,7 @@ timer functions of different operating systems via a unified API.")
(define-public ghc-tasty
(package
(name "ghc-tasty")
- (version "0.11.0.1")
+ (version "0.11.0.4")
(source
(origin
(method url-fetch)
@@ -190,12 +190,13 @@ timer functions of different operating systems via a unified API.")
".tar.gz"))
(sha256
(base32
- "1chapivmmwsb1ghwagvdm80bfj3hdk75m94z4p212ng2i4ghpjkx"))))
+ "05pxjzgbgjdn7477xry0ssjrnmnsydqiq6nm6ck8n2da1baliqp0"))))
(build-system haskell-build-system)
(inputs
`(("ghc-stm" ,ghc-stm)
("ghc-mtl" ,ghc-mtl)
("ghc-tagged" ,ghc-tagged)
+ ("ghc-regex-tdfa" ,ghc-regex-tdfa)
("ghc-regex-tdfa-rc" ,ghc-regex-tdfa-rc)
("ghc-optparse-applicative" ,ghc-optparse-applicative)
("ghc-unbounded-delays" ,ghc-unbounded-delays)
@@ -310,10 +311,36 @@ only those tests that failed in the last run, or to only run the tests that have
been added since previous test run.")
(license license:bsd-3)))
+(define-public ghc-tasty-expected-failure
+ (package
+ (name "ghc-tasty-expected-failure")
+ (version "0.11.0.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "tasty-expected-failure/tasty-expected-failure-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0r555f18d2gj96pjyc13chn1nxaxl81am4xgip3mvvjhw8s5mva1"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-tagged" ,ghc-tagged)
+ ("ghc-tasty" ,ghc-tasty)))
+ (home-page "http://github.com/nomeata/tasty-expected-failure")
+ (synopsis "Mark tasty tests as failure expected")
+ (description
+ "With the function @code{Test.Tasty.ExpectedFailure.expectFail} in the
+provided module @code{Test.Tasty.ExpectedFailure}, you can mark that you
+expect test cases to fail, and not to pass. This can be used for test-driven
+development.")
+ (license license:expat)))
+
(define-public ghc-quickcheck-instances
(package
(name "ghc-quickcheck-instances")
- (version "0.3.12")
+ (version "0.3.16.1")
(source
(origin
(method url-fetch)
@@ -323,18 +350,22 @@ been added since previous test run.")
version ".tar.gz"))
(sha256
(base32
- "1wwvkzpams7i0j7nk5qj8vvhj8x5zcbgbgrpczszgvshva4bkmfx"))))
+ "01v5bs7r9yvhkvb4yc9bqnacy8r6cy2gr9lnmwx40n5apgi0gcbz"))))
(build-system haskell-build-system)
(inputs
- `(("ghc-old-time" ,ghc-old-time)
- ("ghc-unordered-containers" ,ghc-unordered-containers)
+ `(("ghc-quickcheck" ,ghc-quickcheck)
+ ("ghc-base-compat" ,ghc-base-compat)
+ ("ghc-case-insensitive" ,ghc-case-insensitive)
("ghc-hashable" ,ghc-hashable)
- ("ghc-quickcheck" ,ghc-quickcheck)
+ ("ghc-old-time" ,ghc-old-time)
("ghc-scientific" ,ghc-scientific)
- ("ghc-vector" ,ghc-vector)
- ("ghc-text" ,ghc-text)))
- (home-page
- "https://github.com/aslatter/qc-instances")
+ ("ghc-tagged" ,ghc-tagged)
+ ("ghc-text" ,ghc-text)
+ ("ghc-transformers-compat" ,ghc-transformers-compat)
+ ("ghc-unordered-containers" ,ghc-unordered-containers)
+ ("ghc-uuid-types" ,ghc-uuid-types)
+ ("ghc-vector" ,ghc-vector)))
+ (home-page "https://github.com/aslatter/qc-instances")
(synopsis "Common quickcheck instances")
(description "This package provides QuickCheck instances for types
provided by the Haskell Platform.")
@@ -390,7 +421,7 @@ use HUnit assertions as QuickCheck properties.")
(define-public ghc-quickcheck
(package
(name "ghc-quickcheck")
- (version "2.8.2")
+ (version "2.10.1")
(outputs '("out" "doc"))
(source
(origin
@@ -401,21 +432,38 @@ use HUnit assertions as QuickCheck properties.")
".tar.gz"))
(sha256
(base32
- "1ai6k5v0bibaxq8xffcblc6rwmmk6gf8vjyd9p2h3y6vwbhlvilq"))))
+ "1rfmns3lj3hl93k1jws85ajkkw7z9ll8cw292n9m7zald1w5dfqx"))))
(build-system haskell-build-system)
(arguments
`(#:tests? #f ; FIXME: currently missing libraries used for tests.
#:configure-flags '("-f base4")))
(inputs
- `(("ghc-tf-random" ,ghc-tf-random)))
- (home-page
- "https://github.com/nick8325/quickcheck")
- (synopsis
- "Automatic testing of Haskell programs")
+ `(("ghc-random" ,ghc-random)
+ ("ghc-tf-random" ,ghc-tf-random)))
+ (home-page "https://github.com/nick8325/quickcheck")
+ (synopsis "Automatic testing of Haskell programs")
(description
- "QuickCheck is a library for random testing of program properties.")
+ "QuickCheck is a library for random testing of program properties. The
+programmer provides a specification of the program, in the form of properties
+which functions should satisfy, and QuickCheck then tests that the properties
+hold in a large number of randomly generated cases. Specifications are
+expressed in Haskell, using combinators defined in the QuickCheck library.")
(license license:bsd-3)))
+(define-public ghc-quickcheck-latest
+ (package (inherit ghc-quickcheck)
+ (version "2.11.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://hackage.haskell.org/package/QuickCheck/QuickCheck-"
+ version
+ ".tar.gz"))
+ (sha256
+ (base32
+ "0xhqk35fkzlbjcqbabg6962jkv8d688nzmz7ng4bm84x2d95d328"))))))
+
(define-public ghc-test-framework
(package
(name "ghc-test-framework")
@@ -429,6 +477,8 @@ use HUnit assertions as QuickCheck properties.")
(base32
"0wxjgdvb1c4ykazw774zlx86550848wbsvgjgcrdzcgbb9m650vq"))))
(build-system haskell-build-system)
+ (arguments
+ `(#:configure-flags (list "--allow-newer=time")))
(native-inputs
`(("ghc-hunit" ,ghc-hunit)
("ghc-quickcheck" ,ghc-quickcheck)))
@@ -478,7 +528,7 @@ reporting and test statistics output.")
(define-public ghc-test-framework-quickcheck2
(package
(name "ghc-test-framework-quickcheck2")
- (version "0.3.0.3")
+ (version "0.3.0.4")
(source
(origin
(method url-fetch)
@@ -487,14 +537,7 @@ reporting and test statistics output.")
"test-framework-quickcheck2-" version ".tar.gz"))
(sha256
(base32
- "12p1zwrsz35r3j5gzbvixz9z1h5643rhihf5gqznmc991krwd5nc"))
- (modules '((guix build utils)))
- (snippet
- ;; The Hackage page and the cabal file linked there for this package
- ;; both list 2.9 as the upper version limit, but the source tarball
- ;; specifies 2.8. Assume the Hackage page is correct.
- '(substitute* "test-framework-quickcheck2.cabal"
- (("QuickCheck >= 2.4 && < 2.8") "QuickCheck >= 2.4 && < 2.9")))))
+ "0vj834337r6jzr3258cv68ly2sv5999mklpsrfngyk51kywsyqyp"))))
(build-system haskell-build-system)
(inputs
`(("ghc-extensible-exceptions" ,ghc-extensible-exceptions)
@@ -545,7 +588,7 @@ using Template Haskell")
(define-public ghc-hunit
(package
(name "ghc-hunit")
- (version "1.2.5.2")
+ (version "1.3.1.2")
(outputs '("out" "doc"))
(source
(origin
@@ -556,7 +599,7 @@ using Template Haskell")
".tar.gz"))
(sha256
(base32
- "0hcs6qh8bqhip1kkjjnw7ccgcsmawdz5yvffjj5y8zd2vcsavx8a"))))
+ "10akdh4fl615rrshxi3m5gf414il1q42z4zqyb6q4jasmscvzpms"))))
(build-system haskell-build-system)
(home-page "http://hunit.sourceforge.net/")
(synopsis "Unit testing framework for Haskell")
@@ -568,7 +611,7 @@ JUnit tool for Java.")
(define-public hspec-discover
(package
(name "hspec-discover")
- (version "2.2.0")
+ (version "2.2.4")
(source
(origin
(method url-fetch)
@@ -578,7 +621,7 @@ JUnit tool for Java.")
".tar.gz"))
(sha256
(base32
- "0w3awzbljf4hqhxrjrxqa1lfcclg92bhmq641gz2q80vycspapzx"))))
+ "1bz7wb8v0bx1amiz4bpj34xq97d1ia29n3f654wcrh6lacydp3dv"))))
(build-system haskell-build-system)
(arguments `(#:haddock? #f)) ; Haddock phase fails because there are no
; documentation files.
@@ -592,7 +635,7 @@ runs Hspec tests.")
(define-public ghc-hspec-core
(package
(name "ghc-hspec-core")
- (version "2.2.0")
+ (version "2.2.4")
(source
(origin
(method url-fetch)
@@ -602,7 +645,7 @@ runs Hspec tests.")
".tar.gz"))
(sha256
(base32
- "1wgd55k652jaf81nkvciyqi67ycj7zamr4nd9z1cqf8nr9fc3sa4"))))
+ "0x845ngfl6vf65fnpb5mm3wj0ql45pz11bnm0x4gxc4ybd9c52ij"))))
(build-system haskell-build-system)
(arguments `(#:tests? #f)) ; FIXME: testing libraries are missing.
(inputs
@@ -623,7 +666,7 @@ be used to extend Hspec's functionality.")
(define-public ghc-hspec-meta
(package
(name "ghc-hspec-meta")
- (version "2.2.0")
+ (version "2.2.1")
(source
(origin
(method url-fetch)
@@ -633,7 +676,7 @@ be used to extend Hspec's functionality.")
".tar.gz"))
(sha256
(base32
- "1fmqmgrzp135cxhmxxbaswkk4bqbpgfml00cmcz0d39n11vzpa5z"))))
+ "1m1pkrxiglxzwv8gdj5jr1bdbhxvvg6sbl9m61w4565d7k1m8yxa"))))
(build-system haskell-build-system)
(inputs
`(("ghc-quickcheck" ,ghc-quickcheck)
@@ -653,7 +696,7 @@ used to test the in-development version of Hspec.")
(define-public ghc-hspec
(package
(name "ghc-hspec")
- (version "2.2.0")
+ (version "2.2.4")
(source
(origin
(method url-fetch)
@@ -663,7 +706,7 @@ used to test the in-development version of Hspec.")
".tar.gz"))
(sha256
(base32
- "0zqisxznlbszivsgy3irvf566zhcr6ipqqj3x9i7pj5hy913jwqf"))))
+ "1cf90gqvg1iknja6ymxqxyabpahcxni3blqllh81ywbir3whljvj"))))
(build-system haskell-build-system)
(inputs
`(("ghc-hspec-core" ,ghc-hspec-core)
@@ -726,3 +769,27 @@ Haskell, inspired by the Ruby library RSpec.")
(description "This library provides catchy combinators for HUnit, see
@uref{https://github.com/sol/hspec-expectations#readme, the README}.")
(license license:expat)))
+
+(define-public ghc-nanospec
+ (package
+ (name "ghc-nanospec")
+ (version "0.2.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "nanospec/nanospec-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1rcmhl9bhyfvanalnf1r86wkx6rq6wdvagnw1h011jcnnb1cq56g"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-hspec" ,ghc-hspec)
+ ("ghc-silently" ,ghc-silently)))
+ (home-page "https://github.com/hspec/nanospec#readme")
+ (synopsis "Lightweight implementation of a subset of Hspec's API")
+ (description
+ "Nanospec is a lightweight implementation of a subset of Hspec's API with
+minimal dependencies.")
+ (license license:expat)))
diff --git a/gnu/packages/haskell-crypto.scm b/gnu/packages/haskell-crypto.scm
index f1c9b9f26c..d930536e3f 100644
--- a/gnu/packages/haskell-crypto.scm
+++ b/gnu/packages/haskell-crypto.scm
@@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org>
-;;; Copyright © 2015, 2017 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016 ng0 <ng0@infotropique.org>
;;; Copyright © 2017 rsiddharth <s@ricketyspace.net>
;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr>
@@ -257,7 +257,7 @@ the C implementation.")
(define-public ghc-cryptonite
(package
(name "ghc-cryptonite")
- (version "0.19")
+ (version "0.20")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
@@ -265,7 +265,7 @@ the C implementation.")
version ".tar.gz"))
(sha256
(base32
- "1rw5k34vpn4134yrzdhf0rsshsrkixfbv9ap18di2n00z2cw1shw"))))
+ "0m63np0affci7ba9mrkvw2flzxn0s2mk930xldc4dwijw32gl6r6"))))
(build-system haskell-build-system)
(inputs
`(("ghc-memory" ,ghc-memory)
@@ -419,14 +419,14 @@ libraries, like OpenSSL.")
(define-public ghc-x509
(package
(name "ghc-x509")
- (version "1.6.3")
+ (version "1.6.4")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
"x509/x509-" version ".tar.gz"))
(sha256
(base32
- "1pmsby29abn485fvnymsgipvb3p1ch9c591xj5ncszkf0ivjiiin"))))
+ "0hixx76wpb4qxida017ka5zr6lrsycahrqyw8z90q9mxvndpy3my"))))
(build-system haskell-build-system)
(inputs
`(("ghc-memory" ,ghc-memory)
@@ -449,7 +449,7 @@ libraries, like OpenSSL.")
(define-public ghc-x509-store
(package
(name "ghc-x509-store")
- (version "1.6.1")
+ (version "1.6.2")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
@@ -457,7 +457,7 @@ libraries, like OpenSSL.")
version ".tar.gz"))
(sha256
(base32
- "01abx528i9f7djq2772xyna8x2mykrnwqkcfrapcx7z3bhprvml3"))))
+ "0yw09nwkvr324qz4sc27c0p28bz2h6gns6lkaz9mz92mgqf2dza9"))))
(build-system haskell-build-system)
(inputs
`(("ghc-mtl" ,ghc-mtl)
@@ -476,7 +476,7 @@ collections, certificates, revocation lists, and exception lists.")
(define-public ghc-x509-validation
(package
(name "ghc-x509-validation")
- (version "1.6.3")
+ (version "1.6.5")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
@@ -484,7 +484,7 @@ collections, certificates, revocation lists, and exception lists.")
version ".tar.gz"))
(sha256
(base32
- "1qr1v561hdlhjgqjv9pj9mbk0q1xf2mr1j67ghy93nlxxyzd7dw0"))))
+ "190w1sr3w6w49v3yvqz4grb0v09ym4gll3n8bxwijvbvcybk3xyi"))))
(build-system haskell-build-system)
(inputs
`(("ghc-memory" ,ghc-memory)
@@ -508,7 +508,7 @@ list validation.")
(define-public ghc-x509-system
(package
(name "ghc-x509-system")
- (version "1.6.1")
+ (version "1.6.4")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
@@ -516,7 +516,7 @@ list validation.")
version ".tar.gz"))
(sha256
(base32
- "10qf60d2f9jqwnbrhsb2cwpi86xg66m6dxndlxw967v1cdb3h6gf"))))
+ "0k7zc0xp7r6kqmi39rpiicvq78xb0pr2cq6q5s3kmmsshllg13nr"))))
(build-system haskell-build-system)
(inputs
`(("ghc-mtl" ,ghc-mtl)
diff --git a/gnu/packages/haskell-web.scm b/gnu/packages/haskell-web.scm
index e43f20b843..a24ee4b7c0 100644
--- a/gnu/packages/haskell-web.scm
+++ b/gnu/packages/haskell-web.scm
@@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org>
-;;; Copyright © 2015, 2016 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015, 2016, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015 Federico Beffa <beffa@fbengineering.ch>
;;; Copyright © 2016 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2017 rsiddharth <s@ricketyspace.net>
@@ -36,7 +36,7 @@
(define-public ghc-tagsoup
(package
(name "ghc-tagsoup")
- (version "0.14")
+ (version "0.14.3")
(source
(origin
(method url-fetch)
@@ -46,11 +46,12 @@
".tar.gz"))
(sha256
(base32
- "07pax7i0bl79dmqqz58zy09yrgpnyyr2ya0z183hv96kp65jv0lh"))))
+ "00j2rm2sx0syn16kg2402fz4k8yqfl9knmi367jsiycds1q9zzf9"))))
(build-system haskell-build-system)
(inputs `(("ghc-text" ,ghc-text)))
- (home-page
- "http://community.haskell.org/~ndm/tagsoup/")
+ (native-inputs
+ `(("ghc-quickcheck" ,ghc-quickcheck)))
+ (home-page "http://community.haskell.org/~ndm/tagsoup/")
(synopsis
"Parsing and extracting information from (possibly malformed) HTML/XML
documents")
@@ -126,7 +127,7 @@ both client and server code).")
(define-public ghc-http
(package
(name "ghc-http")
- (version "4000.2.20")
+ (version "4000.3.3")
(outputs '("out" "doc"))
(source
(origin
@@ -137,7 +138,7 @@ both client and server code).")
".tar.gz"))
(sha256
(base32
- "0nyqdxr5ls2dxkf4a1f3x15xzwdm46ppn99nkcbhswlr6s3cq1s4"))))
+ "1wlvvqcxsnd2is3khsla0vd8i9cy12v1pg6d6i13ihcd131a7bdv"))))
(build-system haskell-build-system)
(native-inputs
`(("ghc-hunit" ,ghc-hunit)))
@@ -391,7 +392,7 @@ communication between web applications and web servers.")
(define-public ghc-wai-logger
(package
(name "ghc-wai-logger")
- (version "2.2.4.1")
+ (version "2.3.0")
(source
(origin
(method url-fetch)
@@ -401,7 +402,7 @@ communication between web applications and web servers.")
".tar.gz"))
(sha256
(base32
- "1s6svvy3ci4j1dj1jaw8hg628miwj8f5gpy9n8d8hpsaxav6nzgk"))))
+ "1w0b0vinsyqr37wciljkz8g5dcmfi2r210lq194a0wkycly9kkch"))))
(build-system haskell-build-system)
(arguments `(#:tests? #f)) ; FIXME: Tests cannot find libraries exported
; by propagated-inputs.
@@ -424,7 +425,7 @@ communication between web applications and web servers.")
(define-public ghc-wai-extra
(package
(name "ghc-wai-extra")
- (version "3.0.13.1")
+ (version "3.0.18")
(source
(origin
(method url-fetch)
@@ -434,7 +435,7 @@ communication between web applications and web servers.")
".tar.gz"))
(sha256
(base32
- "0mh761a1bayr4ydwqmh3h8ndpi19zqw34mmy49lp2abr70r0nm1p"))))
+ "0r079mqqdv14fp97w0rigdpwk6b88grpjlqsjc5y8bbc0skf5za2"))))
(build-system haskell-build-system)
(inputs
`(("ghc-ansi-terminal" ,ghc-ansi-terminal)
@@ -578,17 +579,16 @@ a WAI handler, via the native Haskell TLS implementation.")
(define-public ghc-xss-sanitize
(package
(name "ghc-xss-sanitize")
- (version "0.3.5.6")
+ (version "0.3.5.7")
(source
(origin
(method url-fetch)
(uri (string-append
"https://hackage.haskell.org/package/xss-sanitize/xss-sanitize-"
- version
- ".tar.gz"))
+ version ".tar.gz"))
(sha256
(base32
- "1j2qrn2dbfx01m7zyk9ilgnp9zjwq9mk62b0rdal4zkg4vh212h0"))))
+ "005cmhaw9xbzkcn42jmhvcvk63bzmg4lml368xwmqdvh7r0mcn4m"))))
(build-system haskell-build-system)
(inputs
`(("ghc-tagsoup" ,ghc-tagsoup)
@@ -610,7 +610,7 @@ attacks.")
(define-public ghc-css-text
(package
(name "ghc-css-text")
- (version "0.1.2.1")
+ (version "0.1.3.0")
(source
(origin
(method url-fetch)
@@ -620,7 +620,7 @@ attacks.")
".tar.gz"))
(sha256
(base32
- "1xi1n2f0g8y43p95lynhcg50wxbq7hqfzbfzm7fy8mn7gvd920nw"))))
+ "0ynd9f4hn2sfwqzbsa0y7phmxq8za7jiblpjwx0ry8b372zhgxaz"))))
(build-system haskell-build-system)
(inputs
`(("ghc-text" ,ghc-text)
@@ -636,7 +636,7 @@ Haskell.")
(define-public ghc-mime-types
(package
(name "ghc-mime-types")
- (version "0.1.0.6")
+ (version "0.1.0.7")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
@@ -644,7 +644,7 @@ Haskell.")
version ".tar.gz"))
(sha256
(base32
- "090z3dp928243amnc6s8g10rk2h2bprk9y138q6wj3cpflzr72pw"))))
+ "1fg9cqpp5lswk8ajlq4f41n12c2v2naz179l8dsz6zisjqj4l5l3"))))
(build-system haskell-build-system)
(inputs
`(("ghc-text" ,ghc-text)))
@@ -702,23 +702,29 @@ Strict, Transitional and Frameset variants.")
(define-public ghc-blaze-html
(package
(name "ghc-blaze-html")
- (version "0.8.1.1")
+ (version "0.9.0.1")
(source
(origin
(method url-fetch)
- (uri (string-append
- "https://hackage.haskell.org/package/blaze-html/blaze-html-"
- version
- ".tar.gz"))
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "blaze-html/blaze-html-"
+ version ".tar.gz"))
(sha256
(base32
- "1dnw50kh0s405cg9i2y4a8awanhj3bqzk21jwgfza65kcjby7lpq"))))
+ "0r0acv47nh75bmf7kjyfvhcwz8f02rn9x0a1l80pzgyczfrsmkmf"))))
(build-system haskell-build-system)
- (arguments `(#:tests? #f)) ; FIXME: testing libraries are missing.
+ (arguments
+ `(#:configure-flags (list "--allow-newer=QuickCheck")))
(inputs
`(("ghc-blaze-builder" ,ghc-blaze-builder)
("ghc-text" ,ghc-text)
("ghc-blaze-markup" ,ghc-blaze-markup)))
+ (native-inputs
+ `(("ghc-hunit" ,ghc-hunit)
+ ("ghc-quickcheck" ,ghc-quickcheck)
+ ("ghc-test-framework" ,ghc-test-framework)
+ ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
+ ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)))
(home-page "http://jaspervdj.be/blaze")
(synopsis "Fast HTML combinator library")
(description "This library provides HTML combinators for Haskell.")
@@ -727,7 +733,7 @@ Strict, Transitional and Frameset variants.")
(define-public ghc-aeson
(package
(name "ghc-aeson")
- (version "0.10.0.0")
+ (version "1.2.4.0")
(source
(origin
(method url-fetch)
@@ -737,21 +743,33 @@ Strict, Transitional and Frameset variants.")
".tar.gz"))
(sha256
(base32
- "19kp33rfivr4d3myyr8xn803wd7p8x5nc4wb3qvlgjwgyqjaxvrz"))))
+ "16zwpd07cmhs58wwsqbhxy3b58gqw8w5nr7nf6lwi4nvznjdn09l"))))
(build-system haskell-build-system)
(arguments `(#:tests? #f)) ; FIXME: testing libraries are missing.
(inputs
`(("ghc-attoparsec" ,ghc-attoparsec)
+ ("ghc-base-compat" ,ghc-base-compat)
("ghc-dlist" ,ghc-dlist)
- ("ghc-mtl" ,ghc-mtl)
+ ("ghc-hashable" ,ghc-hashable)
("ghc-scientific" ,ghc-scientific)
- ("ghc-syb" ,ghc-syb)
+ ("ghc-tagged" ,ghc-tagged)
+ ("ghc-text" ,ghc-text)
+ ("ghc-th-abstraction" ,ghc-th-abstraction)
+ ("ghc-time-locale-compat" ,ghc-time-locale-compat)
("ghc-unordered-containers" ,ghc-unordered-containers)
+ ("ghc-uuid-types" ,ghc-uuid-types)
("ghc-vector" ,ghc-vector)
- ("ghc-hashable" ,ghc-hashable)
- ("ghc-text" ,ghc-text)
("ghc-hunit" ,ghc-hunit)
- ("ghc-quickcheck" ,ghc-quickcheck)))
+ ("ghc-quickcheck" ,ghc-quickcheck)
+ ("ghc-integer-logarithms" ,ghc-integer-logarithms)
+ ("ghc-base-orphans" ,ghc-base-orphans)
+ ("ghc-base16-bytestring" ,ghc-base16-bytestring)
+ ("ghc-generic-deriving" ,ghc-generic-deriving)
+ ("ghc-test-framework" ,ghc-test-framework)
+ ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
+ ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)
+ ("ghc-quickcheck-instances" ,ghc-quickcheck-instances)
+ ("ghc-hashable-time" ,ghc-hashable-time)))
(home-page "https://github.com/bos/aeson")
(synopsis "Fast JSON parsing and encoding")
(description "This package provides a JSON parsing and encoding library
@@ -762,7 +780,7 @@ naming: in Greek mythology, Aeson was the father of Jason.)")
(define-public ghc-aeson-pretty
(package
(name "ghc-aeson-pretty")
- (version "0.7.2")
+ (version "0.8.5")
(source (origin
(method url-fetch)
(uri (string-append
@@ -770,14 +788,15 @@ naming: in Greek mythology, Aeson was the father of Jason.)")
version ".tar.gz"))
(sha256
(base32
- "03ap81853qi8yd9kdgczllrrni23a6glsfxrwj8zab6ipjrbh234"))))
+ "1yd98972srlbkn0f2jhrb3f443j9wnq2fnw5gbxjxzmkcinfh5yx"))))
(build-system haskell-build-system)
(inputs
`(("ghc-aeson" ,ghc-aeson)
+ ("ghc-base-compat" ,ghc-base-compat)
+ ("ghc-scientific" ,ghc-scientific)
("ghc-vector" ,ghc-vector)
("ghc-text" ,ghc-text)
- ("ghc-unordered-containers"
- ,ghc-unordered-containers)
+ ("ghc-unordered-containers" ,ghc-unordered-containers)
("ghc-attoparsec" ,ghc-attoparsec)
("ghc-cmdargs" ,ghc-cmdargs)))
(home-page "https://github.com/informatikr/aeson-pretty")
diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 5db0c79073..b5950051a5 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -6,7 +6,7 @@
;;; Copyright © 2016, 2018 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2016, 2017 ng0 <ng0@infotropique.org>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
-;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016, 2017 David Craven <david@craven.ch>
;;; Copyright © 2017 Danny Milosavljevic <dannym@scratchpost.org>
;;; Copyright © 2017 Peter Mikkelsen <petermikkelsen10@gmail.com>
@@ -136,7 +136,7 @@ top of CLISP.")
;;
;; - Test posix010 tries to check the existence of a user on the system:
;; getUserEntryForName: does not exist (no such user)
-(define-public ghc
+(define-public ghc-7
(package
(name "ghc")
(version "7.10.2")
@@ -349,7 +349,7 @@ interactive environment for the functional language Haskell.")
("python" ,python-2) ; for tests
("ghostscript" ,ghostscript) ; for tests
;; GHC is built with GHC.
- ("ghc-bootstrap" ,ghc)))
+ ("ghc-bootstrap" ,ghc-7)))
(arguments
`(#:test-target "test"
;; We get a smaller number of test failures by disabling parallel test
@@ -426,6 +426,8 @@ interactive environment for the functional language Haskell.")
interactive environment for the functional language Haskell.")
(license license:bsd-3)))
+(define-public ghc ghc-8)
+
(define-public ghc-hostname
(package
(name "ghc-hostname")
@@ -475,7 +477,7 @@ determine the hostname.")
(define-public ghc-prelude-extras
(package
(name "ghc-prelude-extras")
- (version "0.4.0.2")
+ (version "0.4.0.3")
(source
(origin
(method url-fetch)
@@ -485,7 +487,7 @@ determine the hostname.")
".tar.gz"))
(sha256
(base32
- "1q7mj9hysy747vimnlyrwsk1wb2axymxixa76fwcbcnmz3fi4llp"))))
+ "0xzqdf3nl2h0ra4gnslm1m1nsxlsgc0hh6ky3vn578vh11zhifq9"))))
(build-system haskell-build-system)
(home-page "https://github.com/ekmett/prelude-extras")
(synopsis "Higher order versions of Prelude classes")
@@ -497,7 +499,7 @@ reduce @code{UndecidableInstances}.")
(define-public ghc-data-default
(package
(name "ghc-data-default")
- (version "0.5.3")
+ (version "0.7.1.1")
(source
(origin
(method url-fetch)
@@ -506,7 +508,7 @@ reduce @code{UndecidableInstances}.")
version
".tar.gz"))
(sha256
- (base32 "0d1hm0l9kim3kszshr4msmgzizrzha48gz2kb7b61p7n3gs70m7c"))))
+ (base32 "04d5n8ybmcxba9qb6h389w9zfq1lvj81b82jh6maqp6pkhkmvydh"))))
(build-system haskell-build-system)
(inputs
`(("ghc-data-default-class"
@@ -530,7 +532,7 @@ packages.")
(define-public ghc-data-default-class
(package
(name "ghc-data-default-class")
- (version "0.0.1")
+ (version "0.1.2.0")
(source
(origin
(method url-fetch)
@@ -538,7 +540,7 @@ packages.")
"https://hackage.haskell.org/package/data-default-class/"
"data-default-class-" version ".tar.gz"))
(sha256
- (base32 "0ccgr3jllinchqhw3lsn73ic6axk4196if5274rr1rghls0fxj5d"))))
+ (base32 "0miyjz8d4jyvqf2vp60lyfbnflx6cj2k8apmm9ly1hq0y0iv80ag"))))
(build-system haskell-build-system)
(home-page "https://hackage.haskell.org/package/data-default-class")
(synopsis "Types with default values")
@@ -549,7 +551,7 @@ packages.")
(define-public ghc-data-default-instances-base
(package
(name "ghc-data-default-instances-base")
- (version "0.0.1")
+ (version "0.1.0.1")
(source
(origin
(method url-fetch)
@@ -558,7 +560,7 @@ packages.")
"data-default-instances-base/"
"data-default-instances-base-" version ".tar.gz"))
(sha256
- (base32 "1832nq6by91f1iw73ycvkbgn8kpra83pvf2q61hy47xffh0zy4pb"))))
+ (base32 "0ym1sw3ssdzzifxxhh76qlv8kkmb2iclc158incv1dklyr9y8kw4"))))
(build-system haskell-build-system)
(inputs
`(("ghc-data-default-class" ,ghc-data-default-class)))
@@ -638,7 +640,7 @@ nothing.")
(define-public ghc-haddock-library
(package
(name "ghc-haddock-library")
- (version "1.2.1")
+ (version "1.4.3")
(source
(origin
(method url-fetch)
@@ -648,17 +650,16 @@ nothing.")
".tar.gz"))
(sha256
(base32
- "0mhh2ppfhrvvi9485ipwbkv2fbgj35jvz3la02y3jlvg5ffs1c8g"))))
+ "0ns4bpf6whmcfl0cm2gx2c73if416x4q3ac4l4qm8w84h0zpcr7p"))))
(build-system haskell-build-system)
(inputs
- `(("ghc-base-compat" ,ghc-base-compat)
+ `(("ghc-base-compat" ,ghc-base-compat)))
+ (native-inputs
+ `(("hspec-discover" ,hspec-discover)
("ghc-hspec" ,ghc-hspec)
("ghc-quickcheck" ,ghc-quickcheck)))
- (native-inputs
- `(("hspec-discover" ,hspec-discover)))
(home-page "http://www.haskell.org/haddock/")
- (synopsis
- "Library exposing some functionality of Haddock")
+ (synopsis "Library exposing some functionality of Haddock")
(description
"Haddock is a documentation-generation tool for Haskell libraries. These
modules expose some functionality of it without pulling in the GHC dependency.
@@ -670,7 +671,8 @@ the ‘haddock’ package.")
(define-public ghc-haddock-api
(package
(name "ghc-haddock-api")
- (version "2.16.1")
+ ;; This is the last version to be supported by Cabal < 2.0
+ (version "2.17.4")
(source
(origin
(method url-fetch)
@@ -680,21 +682,47 @@ the ‘haddock’ package.")
".tar.gz"))
(sha256
(base32
- "1spd5axg1pdjv4dkdb5gcwjsc8gg37qi4mr2k2db6ayywdkis1p2"))))
+ "00fn6pzgg8xjbaw12d76jdqh2dbc5xy7miyz0x6kidvvar7i35ss"))))
(build-system haskell-build-system)
(inputs
`(("ghc-paths" ,ghc-paths)
("ghc-haddock-library" ,ghc-haddock-library)))
+ (native-inputs
+ `(("ghc-quickcheck" ,ghc-quickcheck)
+ ("ghc-hspec" ,ghc-hspec)
+ ("hspec-discover" ,hspec-discover)))
(home-page "http://www.haskell.org/haddock/")
(synopsis "API for documentation-generation tool Haddock")
(description "This package provides an API to Haddock, the
documentation-generation tool for Haskell libraries.")
(license license:bsd-3)))
+(define-public ghc-haddock-test
+ (package
+ (name "ghc-haddock-test")
+ (version "0.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "haddock-test/haddock-test-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1ax8fnfrwx66csj952f3virxzapipan9da7z5l1zc12nqkifbs7w"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-xml" ,ghc-xml)
+ ("ghc-syb" ,ghc-syb)))
+ (home-page "http://www.haskell.org/haddock/")
+ (synopsis "Test utilities for Haddock")
+ (description "This package provides test utilities for Haddock.")
+ (license license:bsd-3)))
+
(define-public ghc-haddock
(package
(name "ghc-haddock")
- (version "2.16.1")
+ (version "2.17.4")
(source
(origin
(method url-fetch)
@@ -704,12 +732,16 @@ documentation-generation tool for Haskell libraries.")
".tar.gz"))
(sha256
(base32
- "1mnnvc5jqp6n6rj7xw8wdm0z2xp9fndkz11c8p3vbljsrcqd3v26"))))
+ "1z3h3v7w84dzsm47iavdppc2w899mr4c1agq9fzghgz902i0a655"))))
(build-system haskell-build-system)
- (arguments `(#:tests? #f)) ; FIXME: Tests break with GHC 7.10.2, fixed
- ; upstream. See
- ; <https://github.com/haskell/haddock/issues/427>
+ ;; FIXME: Tests fail with this error:
+ ;; driver-test/Main.hs:4:1: error:
+ ;; Failed to load interface for ‘ResponseFileSpec’
+ (arguments `(#:tests? #f))
(inputs `(("ghc-haddock-api" ,ghc-haddock-api)))
+ (native-inputs
+ `(("ghc-hspec" ,ghc-hspec)
+ ("ghc-haddock-test" ,ghc-haddock-test)))
(home-page "http://www.haskell.org/haddock/")
(synopsis
"Documentation-generation tool for Haskell libraries")
@@ -802,7 +834,7 @@ tool lex or flex for C/C++.")
(define-public ghc-cgi
(package
(name "ghc-cgi")
- (version "3001.2.2.2")
+ (version "3001.3.0.2")
(source
(origin
(method url-fetch)
@@ -812,17 +844,20 @@ tool lex or flex for C/C++.")
".tar.gz"))
(sha256
(base32
- "0q1pxpa8gi42c0hsidcdkhk5xr5anfrvhqsn3iksr9c0rllhz193"))))
+ "1hbpplss1m4rdpm4ibip6fpimlhssqa14fl338kl2jbc463i64cj"))))
(build-system haskell-build-system)
+ (arguments
+ `(#:configure-flags (list "--allow-newer=QuickCheck")))
(inputs
`(("ghc-parsec" ,ghc-parsec)
- ("ghc-old-locale" ,ghc-old-locale)
- ("ghc-old-time" ,ghc-old-time)
("ghc-exceptions" ,ghc-exceptions)
("ghc-multipart" ,ghc-multipart)
("ghc-network-uri" ,ghc-network-uri)
("ghc-network" ,ghc-network)
("ghc-mtl" ,ghc-mtl)))
+ (native-inputs
+ `(("ghc-doctest" ,ghc-doctest)
+ ("ghc-quickcheck" ,ghc-quickcheck)))
(home-page
"https://github.com/cheecheeo/haskell-cgi")
(synopsis "Library for writing CGI programs")
@@ -897,10 +932,71 @@ specification in BNF, Happy generates Haskell code to parse the grammar.
Happy works in a similar way to the yacc tool for C.")
(license license:bsd-3)))
+(define-public ghc-haskell-lexer
+ (package
+ (name "ghc-haskell-lexer")
+ (version "1.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://hackage.haskell.org/package/haskell-lexer/haskell-lexer-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0rj3r1pk88hh3sk3mj61whp8czz5kpxhbc78xlr04bxwqjrjmm6p"))))
+ (build-system haskell-build-system)
+ (home-page "http://hackage.haskell.org/package/haskell-lexer")
+ (synopsis "Fully compliant Haskell 98 lexer")
+ (description
+ "This package provides a fully compliant Haskell 98 lexer.")
+ (license license:bsd-3)))
+
+(define-public ghc-pretty-show
+ (package
+ (name "ghc-pretty-show")
+ (version "1.6.12")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/pretty-show/"
+ "pretty-show-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1fblcxw4z4ry14brin1mvwccs6hqqlhi7xhwv1f23szjq25cjacn"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-haskell-lexer" ,ghc-haskell-lexer)
+ ("ghc-happy" ,ghc-happy)))
+ (home-page "http://wiki.github.com/yav/pretty-show")
+ (synopsis "Tools for working with derived `Show` instances")
+ (description
+ "This package provides a library and an executable for working with
+derived @code{Show} instances. By using the library, derived @code{Show}
+instances can be parsed into a generic data structure. The @code{ppsh} tool
+uses the library to produce human-readable versions of @code{Show} instances,
+which can be quite handy for debugging Haskell programs. We can also render
+complex generic values into an interactive Html page, for easier
+examination.")
+ (license license:expat)))
+
+(define-public ghc-pretty-show-for-haskell-src-exts
+ (package (inherit ghc-pretty-show)
+ (name "ghc-pretty-show")
+ (version "1.6.10")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/pretty-show/"
+ "pretty-show-" version ".tar.gz"))
+ (sha256
+ (base32
+ "133s4l1gk46saf6ycm785rswycy8g3j0qqrv93b5wp8cp50kd0ww"))))))
+
(define-public ghc-haskell-src-exts
(package
(name "ghc-haskell-src-exts")
- (version "1.16.0.1")
+ (version "1.20.1")
(source
(origin
(method url-fetch)
@@ -910,13 +1006,13 @@ Happy works in a similar way to the yacc tool for C.")
".tar.gz"))
(sha256
(base32
- "1h8gjw5g92rvvzadqzpscg73x7ajvs1wlphrh27afim3scdd8frz"))))
+ "1jsjl9hja2dpcfq4mzlfpwyr6axwnwgacfb7aa070kz4lbygzaa8"))))
(build-system haskell-build-system)
(inputs
`(("cpphs" ,cpphs)
- ("ghc-mtl" ,ghc-mtl)
("ghc-happy" ,ghc-happy)
- ("ghc-syb" ,ghc-syb)))
+ ("ghc-mtl" ,ghc-mtl)
+ ("ghc-pretty-show" ,ghc-pretty-show-for-haskell-src-exts)))
(native-inputs
`(("ghc-smallcheck" ,ghc-smallcheck)
("ghc-tasty" ,ghc-tasty)
@@ -931,10 +1027,58 @@ are supported. Apart from these standard extensions, it also handles regular
patterns as per the HaRP extension as well as HSX-style embedded XML syntax.")
(license license:bsd-3)))
+(define-public ghc-haskell-src-exts-util
+ (package
+ (name "ghc-haskell-src-exts-util")
+ (version "0.2.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "haskell-src-exts-util/haskell-src-exts-util-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "14rhwcrdz3kfb69c64qn8kybl7wnpajrjlfz5p95ca4bva4mwclg"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-data-default" ,ghc-data-default)
+ ("ghc-haskell-src-exts" ,ghc-haskell-src-exts)
+ ("ghc-semigroups" ,ghc-semigroups)
+ ("ghc-uniplate" ,ghc-uniplate)))
+ (home-page "https://github.com/pepeiborra/haskell-src-exts-util")
+ (synopsis "Helper functions for working with haskell-src-exts trees")
+ (description
+ "This package provides helper functions for working with
+@code{haskell-src-exts} trees.")
+ (license license:bsd-3)))
+
+(define-public ghc-refact
+ (package
+ (name "ghc-refact")
+ (version "0.3.0.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "refact/refact-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0v0zxcx29b8jxs2kgy9csykqcp8kzhdvyylw2xfwmj4pfxr2kl0a"))))
+ (build-system haskell-build-system)
+ (home-page "http://hackage.haskell.org/package/refact")
+ (synopsis "Specify refactorings to perform with apply-refact")
+ (description
+ "This library provides a datatype which can be interpreted by
+@code{apply-refact}. It exists as a seperate library so that applications can
+specify refactorings without depending on GHC.")
+ (license license:bsd-3)))
+
(define-public hlint
(package
(name "hlint")
- (version "1.9.21")
+ (version "2.1")
(source
(origin
(method url-fetch)
@@ -943,15 +1087,23 @@ patterns as per the HaRP extension as well as HSX-style embedded XML syntax.")
"/" name "-" version ".tar.gz"))
(sha256
(base32
- "14v3rdjjlml9nimdk7d5dvir2bw78ai49yylvms9lnzmw29s3546"))))
+ "13chm0dhh1fn2iy3flnh7ahc3yzh8q0v10qxwd1739sywhykayg9"))))
(build-system haskell-build-system)
(inputs
`(("cpphs" ,cpphs)
+ ("ghc-unordered-containers" ,ghc-unordered-containers)
+ ("ghc-yaml" ,ghc-yaml)
+ ("ghc-vector" ,ghc-vector)
+ ("ghc-text" ,ghc-text)
+ ("ghc-data-default" ,ghc-data-default)
("ghc-cmdargs" ,ghc-cmdargs)
("ghc-haskell-src-exts" ,ghc-haskell-src-exts)
+ ("ghc-haskell-src-exts-util" ,ghc-haskell-src-exts-util)
("ghc-uniplate" ,ghc-uniplate)
("ghc-ansi-terminal" ,ghc-ansi-terminal)
("ghc-extra" ,ghc-extra)
+ ("ghc-refact" ,ghc-refact)
+ ("ghc-aeson" ,ghc-aeson)
("hscolour" ,hscolour)))
(home-page "http://community.haskell.org/~ndm/hlint/")
(synopsis "Suggest improvements for Haskell source code")
@@ -963,7 +1115,7 @@ unwanted suggestions, and to add your own custom suggestions.")
(define-public ghc-resourcet
(package
(name "ghc-resourcet")
- (version "1.1.6")
+ (version "1.1.7.5")
(source
(origin
(method url-fetch)
@@ -973,7 +1125,7 @@ unwanted suggestions, and to add your own custom suggestions.")
".tar.gz"))
(sha256
(base32
- "0zhsaaa4n8ry76vjih519a8npm2hrzk10d5asrgllcwpzmifl41y"))))
+ "0nj0gwfd05divpdn7m47gy6bpcrwn3zk81gc303k0smrbqi0xlq5"))))
(build-system haskell-build-system)
(inputs
`(("ghc-transformers-base" ,ghc-transformers-base)
@@ -994,7 +1146,7 @@ code where you can safely allocate resources.")
(define-public ghc-objectname
(package
(name "ghc-objectname")
- (version "1.1.0.0")
+ (version "1.1.0.1")
(source
(origin
(method url-fetch)
@@ -1004,7 +1156,7 @@ code where you can safely allocate resources.")
".tar.gz"))
(sha256
(base32
- "0kh5fb9ykag6rfsm3f0bx3w323s18w2cyry34w5xgli5ncqimadg"))))
+ "046jm94rmm46cicd31pl54vdvfjvhd9ffbfycy2lxzc0fliyznvj"))))
(build-system haskell-build-system)
(home-page "https://hackage.haskell.org/package/ObjectName")
(synopsis "Helper library for Haskell OpenGL")
@@ -1043,7 +1195,7 @@ award winning Linux port of \"Civilization: Call To Power.\"")
(define-public ghc-sdl-mixer
(package
(name "ghc-sdl-mixer")
- (version "0.6.1.1")
+ (version "0.6.2.0")
(source
(origin
(method url-fetch)
@@ -1053,7 +1205,7 @@ award winning Linux port of \"Civilization: Call To Power.\"")
".tar.gz"))
(sha256
(base32
- "0md3238hx79mxb9a7l43kg3b3d28x4mqvj0hjsbsh15ajnvy9x2z"))))
+ "1fhray79d80dk2aj9mx3ks05mm48sd832g8zgxli226jx471fs8r"))))
(build-system haskell-build-system)
(arguments
`(#:configure-flags
@@ -1074,7 +1226,7 @@ MIDI, Ogg Vorbis, and SMPEG MP3 libraries.")
(define-public ghc-sdl-image
(package
(name "ghc-sdl-image")
- (version "0.6.1.1")
+ (version "0.6.1.2")
(source
(origin
(method url-fetch)
@@ -1084,7 +1236,7 @@ MIDI, Ogg Vorbis, and SMPEG MP3 libraries.")
".tar.gz"))
(sha256
(base32
- "1m02q2426qp8m8pzz2jkk4srk2vb3j3ickiaga5jx9rkkhz732zq"))))
+ "1ybdwlqi5nqzpsbh2md5mxhwmjn910iqysf6nykwjxlmvhcjk281"))))
(build-system haskell-build-system)
(arguments
`(#:configure-flags
@@ -1121,10 +1273,30 @@ PNG, PNM, TGA, TIFF, XCF, XPM, XV.")
computation library for Haskell.")
(license license:bsd-3)))
+(define-public ghc-fixed
+ (package
+ (name "ghc-fixed")
+ (version "0.2.1.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/fixed/fixed-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1qhmwx8iqshns0crmr9d2f8hm65jxbcp3dvv0c39v34ra7if3a94"))))
+ (build-system haskell-build-system)
+ (home-page "https://github.com/ekmett/fixed")
+ (synopsis "Signed 15.16 precision fixed point arithmetic")
+ (description
+ "This package provides functions for signed 15.16 precision fixed point
+arithmetic.")
+ (license license:bsd-3)))
+
(define-public ghc-openglraw
(package
(name "ghc-openglraw")
- (version "2.5.1.0")
+ (version "3.2.7.0")
(source
(origin
(method url-fetch)
@@ -1134,10 +1306,11 @@ computation library for Haskell.")
".tar.gz"))
(sha256
(base32
- "1kfq24mxg922ml3kkmym2qfpc56jbmrfbiix4rc2cxlwv05i191k"))))
+ "024aln102d1mmsdalq9jd5mmwjbnrb8gxcak73lybrc7q87kswk2"))))
(build-system haskell-build-system)
(inputs
`(("ghc-half" ,ghc-half)
+ ("ghc-fixed" ,ghc-fixed)
("glu" ,glu)
("ghc-text" ,ghc-text)))
(home-page "http://www.haskell.org/haskellwiki/Opengl")
@@ -1156,7 +1329,7 @@ found at runtime, a userError is thrown.")
(define-public ghc-glut
(package
(name "ghc-glut")
- (version "2.7.0.3")
+ (version "2.7.0.10")
(source
(origin
(method url-fetch)
@@ -1166,7 +1339,7 @@ found at runtime, a userError is thrown.")
".tar.gz"))
(sha256
(base32
- "1qfilpc10jm47anan44c20y8mh76f2dv09m5d22gk0f7am7hg4k2"))))
+ "0sbm943bg896nf3qjmlnsg3zzrr3pl330rzh9g0hwv47nzwwn4ab"))))
(build-system haskell-build-system)
(inputs
`(("ghc-statevar" ,ghc-statevar)
@@ -1183,7 +1356,7 @@ programs.")
(define-public ghc-gluraw
(package
(name "ghc-gluraw")
- (version "1.5.0.2")
+ (version "2.0.0.2")
(source
(origin
(method url-fetch)
@@ -1193,7 +1366,7 @@ programs.")
".tar.gz"))
(sha256
(base32
- "0gscd9lhp9mb10q8s716nx26m8qng9xbb4h6b3f48zzgkc1sy96x"))))
+ "1phmvxr0kkxq89ykmr8rj77inj8dvcxd6h72z1ncdgdazfz3sjw8"))))
(build-system haskell-build-system)
(inputs
`(("ghc-openglraw" ,ghc-openglraw)))
@@ -1207,7 +1380,7 @@ basis for a nicer interface.")
(define-public ghc-opengl
(package
(name "ghc-opengl")
- (version "2.12.0.1")
+ (version "3.0.1.0")
(source
(origin
(method url-fetch)
@@ -1217,7 +1390,7 @@ basis for a nicer interface.")
".tar.gz"))
(sha256
(base32
- "1mcfb167jl75qc2hgylh83vf2jqizvyvkvhhb72adi2crc3zqz4b"))))
+ "1nm2mzrn1h2nnfs9vl5p088hqpll7rdvcsyqsn8q641im9jhqp7l"))))
(build-system haskell-build-system)
(inputs
`(("ghc-text" ,ghc-text)
@@ -1235,7 +1408,7 @@ version 1.3).")
(define-public ghc-streaming-commons
(package
(name "ghc-streaming-commons")
- (version "0.1.14.2")
+ (version "0.1.16")
(source
(origin
(method url-fetch)
@@ -1245,7 +1418,7 @@ version 1.3).")
".tar.gz"))
(sha256
(base32
- "12nw9bwvy6zrabkgvbp371klca3ds6qjlfncg1b8pbwx1y7m8c8h"))))
+ "0vhhm0z88b1r6s50bskdfh73acwfypm614nycmi9jwiyh84zbz8p"))))
(build-system haskell-build-system)
(inputs
`(("ghc-blaze-builder" ,ghc-blaze-builder)
@@ -1260,10 +1433,10 @@ version 1.3).")
("hspec-discover" ,hspec-discover)))
(home-page "https://hackage.haskell.org/package/streaming-commons")
(synopsis "Conduit and pipes needed by some streaming data libraries")
- (description "Provides low-dependency functionality commonly needed by
-various Haskell streaming data libraries, such as @code{conduit} and
+ (description "This package provides low-dependency functionality commonly
+needed by various Haskell streaming data libraries, such as @code{conduit} and
@code{pipe}s.")
- (license license:bsd-3)))
+ (license license:expat)))
(define-public cpphs
(package
@@ -1332,6 +1505,8 @@ configurations to coexist without resorting to mutable global variables or
(sha256
(base32 "0l3viphiszvz5wqzg7a45zp40grwlab941q5ay29iyw8p3v8pbyv"))))
(build-system haskell-build-system)
+ (arguments
+ `(#:configure-flags (list "--allow-newer=base")))
(home-page "https://hackage.haskell.org/package/old-locale")
(synopsis "Adapt to locale conventions")
(description
@@ -1354,6 +1529,8 @@ date and time formats.")
(base32
"1h9b26s3kfh2k0ih4383w90ibji6n0iwamxp6rfp2lbq1y5ibjqw"))))
(build-system haskell-build-system)
+ (arguments
+ `(#:configure-flags (list "--allow-newer=base")))
(inputs
`(("ghc-old-locale" ,ghc-old-locale)))
(home-page "https://hackage.haskell.org/package/old-time")
@@ -1390,7 +1567,7 @@ old @code{time} library. For new projects, the newer
(define-public ghc-dlist
(package
(name "ghc-dlist")
- (version "0.8.0.3")
+ (version "0.8.0.4")
(source
(origin
(method url-fetch)
@@ -1399,7 +1576,7 @@ old @code{time} library. For new projects, the newer
version
".tar.gz"))
(sha256
- (base32 "0brgai4vs7xz29p06kd6gzg5bpa8iy3k7yzgcc44izspd74q4rw7"))))
+ (base32 "0yirrh0s6acjy9hhvf5fqg2d6q5y6gm9xs04v6w1imndh1xqdwdc"))))
(build-system haskell-build-system)
(inputs
`(("ghc-quickcheck" ,ghc-quickcheck)))
@@ -1462,6 +1639,28 @@ Haskell software by automating the fetching, configuration, compilation and
installation of Haskell libraries and programs.")
(license license:bsd-3)))
+(define-public cabal-doctest
+ (package
+ (name "cabal-doctest")
+ (version "1.0.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "cabal-doctest/cabal-doctest-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0bgd4jdmzxq5y465r4sf4jv2ix73yvblnr4c9wyazazafddamjny"))))
+ (build-system haskell-build-system)
+ (home-page "https://github.com/phadej/cabal-doctest")
+ (synopsis "Setup.hs helper for running doctests")
+ (description
+ "To properly work, the @code{doctest} package needs plenty of
+configuration. This library provides the common bits for writing custom
+@file{Setup.hs} files.")
+ (license license:bsd-3)))
+
(define-public ghc-mtl
(package
(name "ghc-mtl")
@@ -1478,6 +1677,10 @@ installation of Haskell libraries and programs.")
(base32
"1icdbj2rshzn0m1zz5wa7v3xvkf6qw811p4s7jgqwvx1ydwrvrfa"))))
(build-system haskell-build-system)
+ (arguments
+ `(#:configure-flags (list "--allow-newer=transformers")))
+ (inputs
+ `(("ghc-transformers" ,ghc-transformers)))
(home-page "https://github.com/ekmett/mtl")
(synopsis
"Monad classes, using functional dependencies")
@@ -1525,6 +1728,8 @@ School of Functional Programming', 1995. See
(sha256
(base32 "0h7imvxkahiy8pzr8cpsimifdfvv18lizrb33k6mnq70rcx9w2zv"))))
(build-system haskell-build-system)
+ (arguments
+ `(#:configure-flags (list "--allow-newer=base")))
(home-page "https://github.com/glguy/utf8-string/")
(synopsis "Support for reading and writing UTF8 Strings")
(description
@@ -1651,7 +1856,7 @@ literals.")
(define-public ghc-zlib
(package
(name "ghc-zlib")
- (version "0.5.4.2")
+ (version "0.6.1.1")
(outputs '("out" "doc"))
(source
(origin
@@ -1662,8 +1867,10 @@ literals.")
".tar.gz"))
(sha256
(base32
- "15hhsk7z3gvm7sz2ic2z1ca5c6rpsln2rr391mdbm1bxlzc1gmkm"))))
+ "0dd79dxf56d8f6ad9if3j87s9gg7yd17ckypjxwplrbkahlb9xf5"))))
(build-system haskell-build-system)
+ ;; Tests require older versions of testy.
+ (arguments `(#:tests? #f))
(inputs `(("zlib" ,zlib)))
(home-page "https://hackage.haskell.org/package/zlib")
(synopsis
@@ -1680,7 +1887,7 @@ access to the full zlib feature set.")
(define-public ghc-stm
(package
(name "ghc-stm")
- (version "2.4.4")
+ (version "2.4.5.0")
(outputs '("out" "doc"))
(source
(origin
@@ -1691,18 +1898,24 @@ access to the full zlib feature set.")
".tar.gz"))
(sha256
(base32
- "0gc8zvdijp3rwmidkpxv76b4i0dc8dw6nbd92rxl4vxl0655iysx"))))
+ "19sr11a0hqikhvf561b38phz6k3zg9s157a0f5ffvghk7wcdpmri"))))
(build-system haskell-build-system)
(home-page "https://hackage.haskell.org/package/stm")
(synopsis "Software Transactional Memory")
(description
- "A modular composable concurrency abstraction.")
+ "Software Transactional Memory, or STM, is an abstraction for concurrent
+communication. The main benefits of STM are composability and modularity.
+That is, using STM you can write concurrent abstractions that can be easily
+composed with any other abstraction built using STM, without exposing the
+details of how your abstraction ensures safety. This is typically not the
+case with other forms of concurrent communication, such as locks or
+@code{MVar}s.")
(license license:bsd-3)))
(define-public ghc-parallel
(package
(name "ghc-parallel")
- (version "3.2.0.6")
+ (version "3.2.1.0")
(outputs '("out" "doc"))
(source
(origin
@@ -1713,7 +1926,7 @@ access to the full zlib feature set.")
".tar.gz"))
(sha256
(base32
- "0hp6vf4zxsw6vz6lj505xihmnfhgjp39c9q7nyzlgcmps3xx6a5r"))))
+ "09l52k1gsn667lmv0pp052cbwkzkbhfivp51f2xkrlfzf6xwvqsd"))))
(build-system haskell-build-system)
(home-page "https://hackage.haskell.org/package/parallel")
(synopsis "Parallel programming library")
@@ -1724,7 +1937,7 @@ access to the full zlib feature set.")
(define-public ghc-text
(package
(name "ghc-text")
- (version "1.2.1.3")
+ (version "1.2.2.2")
(outputs '("out" "doc"))
(source
(origin
@@ -1735,10 +1948,12 @@ access to the full zlib feature set.")
".tar.gz"))
(sha256
(base32
- "0gzqx5cpkdhshbz9xss51mpyq23pnf8dwjz4h3irbv2ryaa4qdlq"))))
+ "1y9d0zjs2ls0c574mr5xw7y3y49s62sd3wcn9lhpwz8a6q352iii"))))
(build-system haskell-build-system)
- (arguments
- `(#:tests? #f)) ; FIXME: currently missing libraries used for tests.
+ ;; The test dependencies depend on ghc-text: ghc-test-framework -> ghc-xml -> ghc-text
+ (arguments `(#:tests? #f))
+ (inputs
+ `(("ghc-random" ,ghc-random)))
(home-page "https://github.com/bos/text")
(synopsis "Efficient packed Unicode text type library")
(description
@@ -1751,6 +1966,29 @@ capabilities that are optimized for performance critical use, both
in terms of large data quantities and high speed.")
(license license:bsd-3)))
+(define-public ghc-text-binary
+ (package
+ (name "ghc-text-binary")
+ (version "0.2.1.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "text-binary/text-binary-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "18gl10pwg3qwsk0za3c70j4n6a9129wwf1b7d3a461h816yv55xn"))))
+ (build-system haskell-build-system)
+ (inputs `(("ghc-text" ,ghc-text)))
+ (home-page "https://github.com/kawu/text-binary")
+ (synopsis "Binary instances for text types")
+ (description
+ "This package provides a compatibility layer providing @code{Binary}
+instances for strict and lazy text types for versions older than 1.2.1 of the
+text package.")
+ (license license:bsd-2)))
+
(define-public ghc-strict
(package
(name "ghc-strict")
@@ -1774,7 +2012,7 @@ IO operations.")
(define-public ghc-hashable
(package
(name "ghc-hashable")
- (version "1.2.3.3")
+ (version "1.2.6.1")
(outputs '("out" "doc"))
(source
(origin
@@ -1785,22 +2023,49 @@ IO operations.")
".tar.gz"))
(sha256
(base32
- "0kp4aj0x1iicz9qirpqxxqd8x5g1njbapxk1d90n406w3xykz4pw"))))
+ "0ymv2mcrrgbdc2w39rib171fwnhg7fgp0sy4h8amrh1vw64qgjll"))))
(build-system haskell-build-system)
- (arguments
- `(#:tests? #f)) ; FIXME: currently missing libraries used for tests.
(inputs
- `(("ghc-text" ,ghc-text)))
+ `(("ghc-text" ,ghc-text)
+ ("ghc-random" ,ghc-random)))
+ (native-inputs
+ `(("ghc-test-framework" ,ghc-test-framework)
+ ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
+ ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)
+ ("ghc-hunit" ,ghc-hunit)
+ ("ghc-quickcheck" ,ghc-quickcheck)))
(home-page "https://github.com/tibbe/hashable")
- (synopsis
- "Class for types that can be converted to a hash value")
+ (synopsis "Class for types that can be converted to a hash value")
(description
- "This package defines a class, 'Hashable', for types that can be
+ "This package defines a class, @code{Hashable}, for types that can be
converted to a hash value. This class exists for the benefit of hashing-based
data structures. The package provides instances for basic types and a way to
combine hash values.")
(license license:bsd-3)))
+(define-public ghc-hashable-time
+ (package
+ (name "ghc-hashable-time")
+ (version "0.2.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://hackage.haskell.org/package/hashable-time/hashable-time-"
+ version
+ ".tar.gz"))
+ (sha256
+ (base32
+ "0k932nyd08l3xxbh2g3n76py2f4kd9yw4s5a065vjz0xp6wjnxdm"))))
+ (build-system haskell-build-system)
+ (inputs `(("ghc-hashable" ,ghc-hashable)))
+ (home-page "http://hackage.haskell.org/package/hashable-time")
+ (synopsis "Hashable instances for Data.Time")
+ (description
+ "This package provides @code{Hashable} instances for types in
+@code{Data.Time}.")
+ (license license:bsd-3)))
+
(define-public ghc-data-hash
(package
(name "ghc-data-hash")
@@ -1870,7 +2135,7 @@ library, including the ability to split random number generators.")
(define-public ghc-primitive
(package
(name "ghc-primitive")
- (version "0.6.1.0")
+ (version "0.6.3.0")
(outputs '("out" "doc"))
(source
(origin
@@ -1881,7 +2146,7 @@ library, including the ability to split random number generators.")
".tar.gz"))
(sha256
(base32
- "1j1q7l21rdm8kfs93vibr3xwkkhqis181w2k6klfhx5g5skiywwk"))))
+ "0mcmbnj08wd6zfwn7xk6zf5hy5zwbla5v78pw0dpymqg9s0gzpnd"))))
(build-system haskell-build-system)
(home-page
"https://github.com/haskell/primitive")
@@ -1948,7 +2213,7 @@ compatibility to run on old versions of the platform.")
(define-public ghc-transformers-compat
(package
(name "ghc-transformers-compat")
- (version "0.4.0.4")
+ (version "0.5.1.4")
(source
(origin
(method url-fetch)
@@ -1957,7 +2222,7 @@ compatibility to run on old versions of the platform.")
"/transformers-compat-" version ".tar.gz"))
(sha256
(base32
- "0lmg8ry6bgigb0v2lg0n74lxi8z5m85qq0qi4h1k9llyjb4in8ym"))))
+ "17yam0199fh9ndsn9n69jx9nvbsmymzzwbi23dck3dk4q57fz0fq"))))
(build-system haskell-build-system)
(home-page "https://github.com/ekmett/transformers-compat/")
(synopsis "Small compatibility shim between transformers 0.3 and 0.4")
@@ -1970,7 +2235,7 @@ but also need those types.")
(define-public ghc-unix-time
(package
(name "ghc-unix-time")
- (version "0.3.6")
+ (version "0.3.7")
(source
(origin
(method url-fetch)
@@ -1980,7 +2245,7 @@ but also need those types.")
".tar.gz"))
(sha256
(base32
- "0dyvyxwaffb94bgri1wc4b9wqaasy32pyjn0lww3dqblxv8fn5ax"))))
+ "1qdlc9raih8s0m3x8x3n7q3ngh4faw2alv9l78sp6gnx648k0c8i"))))
(build-system haskell-build-system)
(arguments
`(#:tests? #f)) ; FIXME: Test fails with "System.Time not found". This
@@ -1997,7 +2262,7 @@ for Unix time in Haskell.")
(define-public ghc-unix-compat
(package
(name "ghc-unix-compat")
- (version "0.4.1.4")
+ (version "0.4.2.0")
(source
(origin
(method url-fetch)
@@ -2007,7 +2272,7 @@ for Unix time in Haskell.")
".tar.gz"))
(sha256
(base32
- "0jxk7j5pz2kgfpqr4hznndjg31pqj5xg2qfc5308fcn9xyg1myps"))))
+ "036nv05w0yjxc3rfpar60ddjrlzc40mdgr5k6ihvwlvqfmq1gw9m"))))
(build-system haskell-build-system)
(home-page
"https://github.com/jystic/unix-compat")
@@ -2194,7 +2459,7 @@ Haskell library @code{regex-base}.")
(define-public ghc-parsers
(package
(name "ghc-parsers")
- (version "0.12.3")
+ (version "0.12.4")
(source
(origin
(method url-fetch)
@@ -2204,7 +2469,7 @@ Haskell library @code{regex-base}.")
".tar.gz"))
(sha256
(base32
- "18wzmp8y3py4qa8hdsxqm0jfzmwy744dw7xa48r5s8ynhpimi462"))))
+ "07najh7f9y3ahh42z96sw4hnd0kc4x3wm0xlf739y0gh81ys5097"))))
(build-system haskell-build-system)
(arguments `(#:tests? #f)) ; FIXME: Test fails with "cannot satisfy
; -package attoparsec-0.13.0.1"
@@ -2228,7 +2493,7 @@ the parsers provided by @code{parsec}, @code{attoparsec} and @code{base}'s
(define-public ghc-trifecta
(package
(name "ghc-trifecta")
- (version "1.6")
+ (version "1.7.1.1")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2236,10 +2501,11 @@ the parsers provided by @code{parsec}, @code{attoparsec} and @code{base}'s
"trifecta-" version ".tar.gz"))
(sha256
(base32
- "0rbhv9m17k7l1zr70i0yw5da0qjgxmfh1da8brj0zdzwjn9ac0mk"))))
+ "13n6a3fdxngnzsjnhfrzigv1c2g0xm6lqkjcnirpc37sd0rpby31"))))
(build-system haskell-build-system)
(inputs
- `(("ghc-reducers" ,ghc-reducers)
+ `(("ghc-doctest" ,ghc-doctest-0.13)
+ ("ghc-reducers" ,ghc-reducers)
("ghc-semigroups" ,ghc-semigroups)
("ghc-ansi-wl-pprint" ,ghc-ansi-wl-pprint)
("ghc-ansi-terminal" ,ghc-ansi-terminal)
@@ -2258,16 +2524,39 @@ the parsers provided by @code{parsec}, @code{attoparsec} and @code{base}'s
("ghc-quickcheck" ,ghc-quickcheck)
("ghc-unordered-containers" ,ghc-unordered-containers)
("ghc-utf8-string" ,ghc-utf8-string)))
+ (native-inputs
+ `(("cabal-doctest" ,cabal-doctest)))
(home-page "https://github.com/ekmett/trifecta/")
(synopsis "Parser combinator library with convenient diagnostics")
(description "Trifecta is a modern parser combinator library for Haskell,
with slicing and Clang-style colored diagnostics.")
(license license:bsd-3)))
+(define-public ghc-time-locale-compat
+ (package
+ (name "ghc-time-locale-compat")
+ (version "0.1.1.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "time-locale-compat/time-locale-compat-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1vdcfr2hp9qh3ag90x6ikbdf42wiqpdylnplffna54bpnilbyi4i"))))
+ (build-system haskell-build-system)
+ (inputs `(("ghc-old-locale" ,ghc-old-locale)))
+ (home-page "https://github.com/khibino/haskell-time-locale-compat")
+ (synopsis "Compatibility of TimeLocale between old-locale and time-1.5")
+ (description "This package contains a wrapped name module for
+@code{TimeLocale}.")
+ (license license:bsd-3)))
+
(define-public ghc-attoparsec
(package
(name "ghc-attoparsec")
- (version "0.13.0.1")
+ (version "0.13.2.2")
(source
(origin
(method url-fetch)
@@ -2277,16 +2566,20 @@ with slicing and Clang-style colored diagnostics.")
".tar.gz"))
(sha256
(base32
- "0cprkr7bl4lrr80pz8mryb4rbfwdgpsrl7g0fbcaybhl8p5hm26f"))))
+ "0j6qcwd146yzlkc9mcvzvnixsyl65n2a68l28322q5v9p4g4g4yx"))))
(build-system haskell-build-system)
+ ;; FIXME: at least on test fails with QuickCheck > 2.9.2. Once upstream
+ ;; has updated the tests to work with a later version of QuickCheck we can
+ ;; re-enable them.
+ (arguments `(#:tests? #f))
(inputs
`(("ghc-scientific" ,ghc-scientific)
("ghc-text" ,ghc-text)))
(native-inputs
- `(("ghc-quickcheck" ,ghc-quickcheck)
+ `(("ghc-tasty" ,ghc-tasty)
+ ("ghc-tasty-quickcheck" ,ghc-tasty-quickcheck)
+ ("ghc-quickcheck" ,ghc-quickcheck)
("ghc-quickcheck-unicode" ,ghc-quickcheck-unicode)
- ("ghc-test-framework" ,ghc-test-framework)
- ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)
("ghc-vector" ,ghc-vector)))
(home-page "https://github.com/bos/attoparsec")
(synopsis "Fast combinator parsing for bytestrings and text")
@@ -2298,7 +2591,7 @@ complicated text/binary file formats.")
(define-public ghc-zip-archive
(package
(name "ghc-zip-archive")
- (version "0.2.3.7")
+ (version "0.3.0.5")
(source
(origin
(method url-fetch)
@@ -2308,13 +2601,14 @@ complicated text/binary file formats.")
".tar.gz"))
(sha256
(base32
- "169nkxr5zlbymiz1ydlhlqr66vqiycmg85xh559phpkr64w3nqj1"))))
+ "1iwpzjck4jg9bz1yqky051i2wljsqc14q5zbi10dydfp8ip3d0yw"))))
(build-system haskell-build-system)
(inputs
`(("ghc-old-time" ,ghc-old-time)
("ghc-digest" ,ghc-digest)
("zip" ,zip)
("ghc-mtl" ,ghc-mtl)
+ ("ghc-temporary" ,ghc-temporary)
("ghc-text" ,ghc-text)
("ghc-zlib" ,ghc-zlib)))
(native-inputs
@@ -2328,7 +2622,7 @@ modifying, and extracting files from zip archives in Haskell.")
(define-public ghc-distributive
(package
(name "ghc-distributive")
- (version "0.4.4")
+ (version "0.5.3")
(source
(origin
(method url-fetch)
@@ -2338,13 +2632,19 @@ modifying, and extracting files from zip archives in Haskell.")
".tar.gz"))
(sha256
(base32
- "0s2ln9jv7bh4ri2y31178pvjl8x6nik5d0klx7j2b77yjlsgblc2"))))
+ "0y566r97sfyvhsmd4yxiz4ns2mqgwf5bdbp56wgxl6wlkidq0wwi"))))
(build-system haskell-build-system)
- (arguments `(#:tests? #f)) ; FIXME: fails with "cannot satisfy -package
- ; tagged-0.8.1". Suspected Cabal issue.
(inputs
`(("ghc-tagged" ,ghc-tagged)
- ("ghc-transformers-compat" ,ghc-transformers-compat)))
+ ("ghc-base-orphans" ,ghc-base-orphans)
+ ("ghc-transformers-compat" ,ghc-transformers-compat)
+ ("ghc-semigroups" ,ghc-semigroups)
+ ("ghc-generic-deriving" ,ghc-generic-deriving)))
+ (native-inputs
+ `(("cabal-doctest" ,cabal-doctest)
+ ("ghc-doctest" ,ghc-doctest-0.12)
+ ("ghc-hspec" ,ghc-hspec)
+ ("hspec-discover" ,hspec-discover)))
(home-page "https://github.com/ekmett/distributive/")
(synopsis "Distributive functors for Haskell")
(description "This package provides distributive functors for Haskell.
@@ -2354,7 +2654,7 @@ Dual to @code{Traversable}.")
(define-public ghc-cereal
(package
(name "ghc-cereal")
- (version "0.4.1.1")
+ (version "0.5.3.0")
(source
(origin
(method url-fetch)
@@ -2364,8 +2664,13 @@ Dual to @code{Traversable}.")
".tar.gz"))
(sha256
(base32
- "15rhfn9hrjm01ksh9xpz9syxsp9vkvpp6b736iqq38wv2wb7416z"))))
+ "1x4aib7nnaf4x2b9zlndq5n5zsqniw78jifkf55nhnbmvryf05n3"))))
(build-system haskell-build-system)
+ (native-inputs
+ `(("ghc-quickcheck" ,ghc-quickcheck)
+ ("ghc-fail" ,ghc-fail)
+ ("ghc-test-framework" ,ghc-test-framework)
+ ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)))
(home-page "https://hackage.haskell.org/package/cereal")
(synopsis "Binary serialization library")
(description "This package provides a binary serialization library,
@@ -2376,7 +2681,7 @@ parser isolation, and labeled blocks for better error messages.")
(define-public ghc-comonad
(package
(name "ghc-comonad")
- (version "4.2.7.2")
+ (version "5")
(source
(origin
(method url-fetch)
@@ -2386,7 +2691,7 @@ parser isolation, and labeled blocks for better error messages.")
".tar.gz"))
(sha256
(base32
- "0arvbaxgkawzdp38hh53akkahjg2aa3kj2b4ns0ni8a5ylg2cqmp"))))
+ "0anb36m9z52y9xsipxzj9w1b41b2rj8r389cxd6d20dplnfv3rbq"))))
(build-system haskell-build-system)
(native-inputs
`(("ghc-doctest" ,ghc-doctest)))
@@ -2404,7 +2709,7 @@ parser isolation, and labeled blocks for better error messages.")
(define-public hscolour
(package
(name "hscolour")
- (version "1.23")
+ (version "1.24.1")
(source
(origin
(method url-fetch)
@@ -2414,7 +2719,7 @@ parser isolation, and labeled blocks for better error messages.")
".tar.gz"))
(sha256
(base32
- "1c4i2zpami8g3w9949nm3f92g7xwh5c94vkx658zz7ihrjp7w5lp"))))
+ "1j3rpzjygh3igvnd1n2xn63bq68rs047cjxr2qi6xyfnivgf6vz4"))))
(build-system haskell-build-system)
(home-page "https://hackage.haskell.org/package/hscolour")
(synopsis "Script to colourise Haskell code")
@@ -2428,7 +2733,7 @@ and mIRC chat codes.")
(define-public ghc-polyparse
(package
(name "ghc-polyparse")
- (version "1.11")
+ (version "1.12")
(source
(origin
(method url-fetch)
@@ -2438,7 +2743,7 @@ and mIRC chat codes.")
".tar.gz"))
(sha256
(base32
- "1z417f80b0jm4dgv25fk408p3d9mmcd1dlbya3ry0zdx4md09vrh"))))
+ "05dya1vdvq29hkhkdlsglzhw7bdn51rvs1javs0q75nf99c66k7m"))))
(build-system haskell-build-system)
(inputs
`(("ghc-text" ,ghc-text)))
@@ -2458,7 +2763,7 @@ Strings.")
(define-public ghc-extra
(package
(name "ghc-extra")
- (version "1.4.2")
+ (version "1.6.3")
(source
(origin
(method url-fetch)
@@ -2468,9 +2773,11 @@ Strings.")
".tar.gz"))
(sha256
(base32
- "1h9hxkrqrqscx420yz1lmivbrhi6jc3a5ap61vkxd2mhdgark9hf"))))
+ "06ds0jlx6sljwdf63l154qbzia9mnsri79i9qm3xikky3nj9ia1m"))))
(build-system haskell-build-system)
- (inputs `(("ghc-quickcheck" ,ghc-quickcheck)))
+ (inputs
+ `(("ghc-clock" ,ghc-clock)
+ ("ghc-quickcheck" ,ghc-quickcheck)))
(home-page "https://github.com/ndmitchell/extra")
(synopsis "Extra Haskell functions")
(description "This library provides extra functions for the standard
@@ -2482,7 +2789,7 @@ this package makes them available back to GHC 7.2.")
(define-public ghc-profunctors
(package
(name "ghc-profunctors")
- (version "5.1.1")
+ (version "5.2.2")
(source
(origin
(method url-fetch)
@@ -2492,11 +2799,15 @@ this package makes them available back to GHC 7.2.")
".tar.gz"))
(sha256
(base32
- "0lw2ipacpnp9yqmi8zsp01pzpn5hwj8af3y0f3079mddrmw48gw7"))))
+ "0s1pwjidbn761xk43pmzyvn99hm3psdifjd78ylki7f97aiyd0g9"))))
(build-system haskell-build-system)
(inputs
- `(("ghc-distributive" ,ghc-distributive)
+ `(("ghc-base-orphans" ,ghc-base-orphans)
+ ("ghc-bifunctors" ,ghc-bifunctors)
("ghc-comonad" ,ghc-comonad)
+ ("ghc-contravariant" ,ghc-contravariant)
+ ("ghc-distributive" ,ghc-distributive)
+ ("ghc-semigroups" ,ghc-semigroups)
("ghc-tagged" ,ghc-tagged)))
(home-page "https://github.com/ekmett/profunctors/")
(synopsis "Profunctors for Haskell")
@@ -2506,7 +2817,7 @@ this package makes them available back to GHC 7.2.")
(define-public ghc-reducers
(package
(name "ghc-reducers")
- (version "3.12.1")
+ (version "3.12.2")
(source
(origin
(method url-fetch)
@@ -2516,7 +2827,7 @@ this package makes them available back to GHC 7.2.")
".tar.gz"))
(sha256
(base32
- "0pkddg0s3cn759miq0nfrq7lnp3imk5sx784ihsilsbjh9kvffz4"))))
+ "1gbaa5x4zbvnbklcb0d4q4m8hk6w0gz4s0c4m288czi1nw43dl65"))))
(build-system haskell-build-system)
(inputs
`(("ghc-fingertree" ,ghc-fingertree)
@@ -2578,7 +2889,7 @@ exceptions.")
(define-public ghc-generic-deriving
(package
(name "ghc-generic-deriving")
- (version "1.8.0")
+ (version "1.11.1")
(source
(origin
(method url-fetch)
@@ -2588,8 +2899,11 @@ exceptions.")
".tar.gz"))
(sha256
(base32
- "1kc6lhdanls6kgpk8xv5xi14lz1sngcd8xn930hkf7ilq4kxkcr6"))))
+ "1sdh5hpcwvh3b6zvgfk3pr3hla8p88l82njnih880c0gk5zl53dk"))))
(build-system haskell-build-system)
+ (native-inputs
+ `(("ghc-hspec" ,ghc-hspec)
+ ("hspec-discover" ,hspec-discover)))
(home-page "https://hackage.haskell.org/package/generic-deriving")
(synopsis "Generalise the deriving mechanism to arbitrary classes")
(description "This package provides functionality for generalising the
@@ -2599,7 +2913,7 @@ deriving mechanism in Haskell to arbitrary classes.")
(define-public ghc-pcre-light
(package
(name "ghc-pcre-light")
- (version "0.4.0.3")
+ (version "0.4.0.4")
(source
(origin
(method url-fetch)
@@ -2609,10 +2923,12 @@ deriving mechanism in Haskell to arbitrary classes.")
".tar.gz"))
(sha256
(base32
- "0l1df2sk5qwf424bvb8mbdkr2xjg43fi92n5r22yd7vm1zz0jqvf"))))
+ "0xcyi1fivwg7a92mch5bcqzmrfxzqj42rmb3m8kgs61x4qwpxj82"))))
(build-system haskell-build-system)
(inputs
`(("pcre" ,pcre)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
(home-page "https://github.com/Daniel-Diaz/pcre-light")
(synopsis "Haskell library for Perl 5 compatible regular expressions")
(description "This package provides a small, efficient, and portable regex
@@ -2683,6 +2999,8 @@ online}.")
(base32
"1gl7xzffsqmigam6zg0jsglncgzxqafld2p6kb7ccp9xirzdjsjd"))))
(build-system haskell-build-system)
+ (arguments
+ `(#:configure-flags (list "--allow-newer=QuickCheck")))
(native-inputs
`(("ghc-test-framework" ,ghc-test-framework)
("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)))
@@ -2699,7 +3017,7 @@ for Haskell.")
(define-public ghc-temporary
(package
(name "ghc-temporary")
- (version "1.2.0.3")
+ (version "1.2.0.4")
(source
(origin
(method url-fetch)
@@ -2709,7 +3027,7 @@ for Haskell.")
".tar.gz"))
(sha256
(base32
- "0is67bmsjmbbw6wymhis8wyq9gax3sszm573p5719fx2c9z9r24a"))))
+ "0qk741yqnpd69sksgks2vb7zi50rglp9m498lzw4sh268a017rsi"))))
(build-system haskell-build-system)
(inputs `(("ghc-exceptions" ,ghc-exceptions)))
(home-page "http://www.github.com/batterseapower/temporary")
@@ -2803,7 +3121,7 @@ writing to stdout and other handles.")
(define-public ghc-case-insensitive
(package
(name "ghc-case-insensitive")
- (version "1.2.0.4")
+ (version "1.2.0.7")
(outputs '("out" "doc"))
(source
(origin
@@ -2814,7 +3132,7 @@ writing to stdout and other handles.")
".tar.gz"))
(sha256
(base32
- "07nm40r9yw2p9qsfp3pjbsmyn4dabrxw34p48171zmccdd5hv0v3"))))
+ "1j6ahvrz1g5q89y2difyk838yhwjc8z67zr0v2z512qdznc3h38n"))))
(build-system haskell-build-system)
(inputs
`(("ghc-hunit" ,ghc-hunit)))
@@ -2880,6 +3198,8 @@ variety of traversals.")
(base32
"0fbyb6jxy9whgrv6dgnkzz70cmy98arx3q2gnkhgl4a3d7idh36p"))))
(build-system haskell-build-system)
+ (arguments
+ `(#:configure-flags (list "--allow-newer=QuickCheck")))
(inputs
`(("ghc-mtl" ,ghc-mtl)
("ghc-hspec" ,ghc-hspec)
@@ -2927,7 +3247,7 @@ Partial and Infinite Values\"}.")
(define-public ghc-unordered-containers
(package
(name "ghc-unordered-containers")
- (version "0.2.5.1")
+ (version "0.2.7.1")
(outputs '("out" "doc"))
(source
(origin
@@ -2937,7 +3257,7 @@ Partial and Infinite Values\"}.")
"/unordered-containers-" version ".tar.gz"))
(sha256
(base32
- "06l1xv7vhpxly75saxdrbc6p2zlgz1az278arfkz4rgawfnphn3f"))))
+ "00npqiphivjp2d7ryqsdavfn4m5v3w1lq2azhdsrfh0wsvqpg4ig"))))
(build-system haskell-build-system)
(inputs
`(("ghc-chasingbottoms" ,ghc-chasingbottoms)
@@ -3078,7 +3398,7 @@ colored output using the ansi-terminal package.")
(define-public ghc-split
(package
(name "ghc-split")
- (version "0.2.2")
+ (version "0.2.3.1")
(outputs '("out" "doc"))
(source
(origin
@@ -3089,16 +3409,9 @@ colored output using the ansi-terminal package.")
".tar.gz"))
(sha256
(base32
- "0xa3j0gwr6k5vizxybnzk5fgb3pppgspi6mysnp2gwjp2dbrxkzr"))
- (modules '((guix build utils)))
- (snippet
- ;; The Cabal file on Hackage is updated, but the tar.gz does not
- ;; include it. See
- ;; <https://hackage.haskell.org/package/split-0.2.2/revisions/>.
- '(substitute* "split.cabal"
- (("base <4.8") "base <4.9")))))
+ "12660m16c6sib3laaxn6w9s453pyx1b49myrmzfij372vq5bc5bn"))))
(build-system haskell-build-system)
- (inputs
+ (native-inputs
`(("ghc-quickcheck" ,ghc-quickcheck)))
(home-page "https://hackage.haskell.org/package/split")
(synopsis "Combinator library for splitting lists")
@@ -3110,7 +3423,7 @@ mainstream languages.")
(define-public ghc-parsec
(package
(name "ghc-parsec")
- (version "3.1.9")
+ (version "3.1.11")
(outputs '("out" "doc"))
(source
(origin
@@ -3120,7 +3433,7 @@ mainstream languages.")
version
".tar.gz"))
(sha256
- (base32 "1ja20cmj6v336jy87c6h3jzjp00sdbakwbdwp11iln499k913xvi"))))
+ (base32 "0vk7q9j2128q191zf1sg0ylj9s9djwayqk9747k0a5fin4f2b1vg"))))
(build-system haskell-build-system)
(native-inputs
`(("ghc-hunit" ,ghc-hunit)))
@@ -3138,10 +3451,64 @@ defined as a monad transformer that can be stacked on arbitrary monads, and it
is also parametric in the input stream type.")
(license license:bsd-3)))
+(define-public ghc-parser-combinators
+ (package
+ (name "ghc-parser-combinators")
+ (version "0.4.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "parser-combinators/parser-combinators-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1azkz0a6ikym02s8wydjcklp7rz8k512bs4s9lp9g1g03m0yj95i"))))
+ (build-system haskell-build-system)
+ (home-page "https://github.com/mrkkrp/parser-combinators")
+ (synopsis "Commonly useful parser combinators")
+ (description
+ "This is a lightweight package providing commonly useful parser
+combinators.")
+ (license license:bsd-3)))
+
+(define-public ghc-megaparsec
+ (package
+ (name "ghc-megaparsec")
+ (version "6.4.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "megaparsec/megaparsec-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0h9azhs0dfrc359vrbd1jljrg3yfdbwd4p62cxqkn7mnh8913jpd"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-case-insensitive" ,ghc-case-insensitive)
+ ("ghc-mtl" ,ghc-mtl)
+ ("ghc-parser-combinators" ,ghc-parser-combinators)
+ ("ghc-scientific" ,ghc-scientific)
+ ("ghc-text" ,ghc-text)))
+ (native-inputs
+ `(("ghc-quickcheck" ,ghc-quickcheck)
+ ("ghc-hspec" ,ghc-hspec)
+ ("ghc-hspec-expectations" ,ghc-hspec-expectations)
+ ("hspec-discover" ,hspec-discover)))
+ (home-page "https://github.com/mrkkrp/megaparsec")
+ (synopsis "Monadic parser combinators")
+ (description
+ "This is an industrial-strength monadic parser combinator library.
+Megaparsec is a feature-rich package that strikes a nice balance between
+speed, flexibility, and quality of parse errors.")
+ (license license:bsd-2)))
+
(define-public ghc-vector
(package
(name "ghc-vector")
- (version "0.11.0.0")
+ (version "0.12.0.1")
(outputs '("out" "doc"))
(source
(origin
@@ -3152,13 +3519,20 @@ is also parametric in the input stream type.")
".tar.gz"))
(sha256
(base32
- "1r1jlksy7b0kb0fy00g64isk6nyd9wzzdq31gx5v1wn38knj0lqa"))))
+ "0yrx2ypiaxahvaz84af5bi855hd3107kxkbqc8km29nsp5wyw05i"))))
(build-system haskell-build-system)
+ ;; FIXME: To simplify upgrading all Haskell packages, we leave the tests
+ ;; disabled for now.
+ (arguments `(#:tests? #f))
(inputs
`(("ghc-primitive" ,ghc-primitive)
- ("ghc-quickcheck" ,ghc-quickcheck)))
- (arguments
- `(#:tests? #f)) ; FIXME: currently missing libraries used for tests.
+ ("ghc-random" ,ghc-random)
+ ("ghc-quickcheck" ,ghc-quickcheck)
+ ;; ("ghc-hunit" ,ghc-hunit)
+ ;; ("ghc-test-framework" ,ghc-test-framework)
+ ;; ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
+ ;; ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)
+ ))
(home-page "https://github.com/haskell/vector")
(synopsis "Efficient Arrays")
(description "This library provides an efficient implementation of
@@ -3169,7 +3543,7 @@ optimisation framework.")
(define-public ghc-vector-binary-instances
(package
(name "ghc-vector-binary-instances")
- (version "0.2.1.0")
+ (version "0.2.4")
(source
(origin
(method url-fetch)
@@ -3179,11 +3553,13 @@ optimisation framework.")
version ".tar.gz"))
(sha256
(base32
- "028rsf2w193rhs1gic5yvvrwidw9sblczcn10aw64npfc6502l4l"))))
+ "1y236jb72iab9ska1mc48z6yb0xgwmj45laaqdyjxksd84z7hbrb"))))
(build-system haskell-build-system)
(inputs
- `(("ghc-cereal" ,ghc-cereal)
- ("ghc-vector" ,ghc-vector)))
+ `(("ghc-vector" ,ghc-vector)))
+ (native-inputs
+ `(("ghc-tasty" ,ghc-tasty)
+ ("ghc-tasty-quickcheck" ,ghc-tasty-quickcheck)))
(home-page "https://github.com/bos/vector-binary-instances")
(synopsis "Instances of Data.Binary and Data.Serialize for vector")
(description "This library provides instances of @code{Binary} for the
@@ -3196,7 +3572,7 @@ boxed and storable vectors.")
(define-public ghc-network
(package
(name "ghc-network")
- (version "2.6.2.1")
+ (version "2.6.3.1")
(outputs '("out" "doc"))
(source
(origin
@@ -3207,12 +3583,15 @@ boxed and storable vectors.")
".tar.gz"))
(sha256
(base32
- "1yhvpd4wigz165jvyvw9zslx7lgqdj63jh3zv5s74b5ykdfa3zd3"))))
+ "1rl2gl37cf4k0ddsq93q15fwdz1l25nhl4w205krbh7d5dg5y12p"))))
(build-system haskell-build-system)
- (inputs
- `(("ghc-hunit" ,ghc-hunit)))
- (arguments
- `(#:tests? #f)) ; FIXME: currently missing libraries used for tests.
+ ;; The regression tests depend on an unpublished module.
+ (arguments `(#:tests? #f))
+ (native-inputs
+ `(("ghc-hunit" ,ghc-hunit)
+ ("ghc-doctest" ,ghc-doctest)
+ ("ghc-test-framework" ,ghc-test-framework)
+ ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)))
(home-page "https://github.com/haskell/network")
(synopsis "Low-level networking interface")
(description
@@ -3222,7 +3601,7 @@ boxed and storable vectors.")
(define-public ghc-network-uri
(package
(name "ghc-network-uri")
- (version "2.6.0.3")
+ (version "2.6.1.0")
(outputs '("out" "doc"))
(source
(origin
@@ -3233,7 +3612,7 @@ boxed and storable vectors.")
".tar.gz"))
(sha256
(base32
- "1pwbqb2rk4rnvllvdch42p5368xcvpkanp7bxckdhxya8zzwvhhg"))))
+ "1w27zkvn39kjr9lmw9421y8w43h572ycsfafsb7kyvr3a4ihlgj2"))))
(build-system haskell-build-system)
(arguments
`(#:tests? #f)) ; FIXME: currently missing libraries used for tests.
@@ -3275,7 +3654,7 @@ cursor, and changing the title.")
(define-public ghc-vault
(package
(name "ghc-vault")
- (version "0.3.0.4")
+ (version "0.3.0.6")
(source
(origin
(method url-fetch)
@@ -3285,7 +3664,7 @@ cursor, and changing the title.")
".tar.gz"))
(sha256
(base32
- "0ah6qrg71krc87f4vjy4b4shdd0mgyil8fikb3j6fl4kfwlg67jn"))))
+ "0j7gcs440q7qlgzi2hn36crgp2c0w69k40g6vj9hxlm31zk3shqb"))))
(build-system haskell-build-system)
(inputs
`(("ghc-unordered-containers" ,ghc-unordered-containers)
@@ -3353,7 +3732,7 @@ with various performance characteristics.")
(define-public ghc-mmorph
(package
(name "ghc-mmorph")
- (version "1.0.4")
+ (version "1.0.6")
(source
(origin
(method url-fetch)
@@ -3363,10 +3742,12 @@ with various performance characteristics.")
".tar.gz"))
(sha256
(base32
- "0k5zlzmnixfwcjrqvhgi3i6xg532b0gsjvc39v5jigw69idndqr2"))))
+ "1i8dzrc5qi3ryc9vrrmpn3sihmramsbhhd592w4w2k5g26qr3hql"))))
(build-system haskell-build-system)
- (home-page
- "https://hackage.haskell.org/package/mmorph")
+ (inputs
+ `(("ghc-mtl" ,ghc-mtl)
+ ("ghc-transformers-compat" ,ghc-transformers-compat)))
+ (home-page "https://hackage.haskell.org/package/mmorph")
(synopsis "Monad morphisms")
(description
"This library provides monad morphism utilities, most commonly used for
@@ -3376,7 +3757,7 @@ manipulating monad transformer stacks.")
(define-public ghc-monad-control
(package
(name "ghc-monad-control")
- (version "1.0.0.4")
+ (version "1.0.1.0")
(source
(origin
(method url-fetch)
@@ -3385,7 +3766,7 @@ manipulating monad transformer stacks.")
"/monad-control-" version ".tar.gz"))
(sha256
(base32
- "07pn1p4m80wdd7gw62s4yny8rbvm60ka1q8qx5y1plznd8sbg179"))))
+ "1x018gi5irznx5rgzmkr2nrgh26r8cvqwkcfc6n6y05pdjf21c6l"))))
(build-system haskell-build-system)
(inputs
`(("ghc-stm" ,ghc-stm)
@@ -3411,6 +3792,7 @@ a subset of @code{MonadBase} into which generic control operations such as
(sha256
(base32 "18nlj6xvnggy61gwbyrpmvbdkq928wv0wx2zcsljb52kbhddnp3d"))))
(build-system haskell-build-system)
+ (arguments `(#:haddock? #f)) ; Package contains no documentation.
(home-page "https://prime.haskell.org/wiki/Libraries/Proposals/MonadFail")
(synopsis "Forward-compatible MonadFail class")
(description
@@ -3524,22 +3906,26 @@ interoperate with code that uses the new implementation.")
(define-public ghc-blaze-markup
(package
(name "ghc-blaze-markup")
- (version "0.7.0.3")
+ (version "0.8.2.0")
(source
(origin
(method url-fetch)
- (uri (string-append
- "https://hackage.haskell.org/package/blaze-markup/blaze-markup-"
- version
- ".tar.gz"))
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "blaze-markup/blaze-markup-"
+ version ".tar.gz"))
(sha256
(base32
- "080vlhd8dwjxrma4bb524lh8gxs5lm3xh122icy6lnnyipla0s9y"))))
+ "0m3h3ryxj5r74mv5g5dnfq5jbbwmvkl7ray18vi20d5vd93sydj4"))))
(build-system haskell-build-system)
- (arguments `(#:tests? #f)) ; FIXME: testing libraries are missing.
(inputs
`(("ghc-blaze-builder" ,ghc-blaze-builder)
("ghc-text" ,ghc-text)))
+ (native-inputs
+ `(("ghc-hunit" ,ghc-hunit)
+ ("ghc-quickcheck" ,ghc-quickcheck)
+ ("ghc-tasty" ,ghc-tasty)
+ ("ghc-tasty-hunit" ,ghc-tasty-hunit)
+ ("ghc-tasty-quickcheck" ,ghc-tasty-quickcheck)))
(home-page "http://jaspervdj.be/blaze")
(synopsis "Fast markup combinator library for Haskell")
(description "This library provides core modules of a markup combinator
@@ -3627,7 +4013,7 @@ simple general-purpose data structure\".")
(define-public ghc-optparse-applicative
(package
(name "ghc-optparse-applicative")
- (version "0.11.0.2")
+ (version "0.13.0.0")
(source
(origin
(method url-fetch)
@@ -3636,11 +4022,20 @@ simple general-purpose data structure\".")
"/optparse-applicative-" version ".tar.gz"))
(sha256
(base32
- "0ni52ii9555jngljvzxn1ngicr6i2w647ww3rzhdrmng04y95iii"))))
+ "1b0c5fdq8bd070g24vrjrwlq979r8dk8mys6aji9hy1l9pcv3inf"))))
(build-system haskell-build-system)
+ ;; These tests fail because the package doesn't come with all needed test
+ ;; files:
+ ;; - prop_drops_back_contexts
+ ;; - prop_context_carry
+ ;; - prop_help_on_empty
+ ;; - prop_help_on_empty_sub
+ (arguments `(#:tests? #f))
(inputs
`(("ghc-transformers-compat" ,ghc-transformers-compat)
("ghc-ansi-wl-pprint" ,ghc-ansi-wl-pprint)))
+ (native-inputs
+ `(("ghc-quickcheck" ,ghc-quickcheck)))
(home-page "https://github.com/pcapriotti/optparse-applicative")
(synopsis "Utilities and combinators for parsing command line options")
(description "This package provides utilities and combinators for parsing
@@ -3696,7 +4091,7 @@ periodic, on-demand actions in Haskell.")
(define-public ghc-tagged
(package
(name "ghc-tagged")
- (version "0.8.1")
+ (version "0.8.5")
(source
(origin
(method url-fetch)
@@ -3706,8 +4101,10 @@ periodic, on-demand actions in Haskell.")
".tar.gz"))
(sha256
(base32
- "1hc2qzhhz5p1xd8k03sklrdnhcflkwhgpl82k6fam8yckww9ipav"))))
+ "16cdzh0bw16nvjnyyy5j9s60malhz4nnazw96vxb0xzdap4m2z74"))))
(build-system haskell-build-system)
+ (inputs
+ `(("ghc-transformers-compat" ,ghc-transformers-compat)))
(home-page "https://hackage.haskell.org/package/tagged")
(synopsis "Haskell phantom types to avoid passing dummy arguments")
(description "This library provides phantom types for Haskell 98, to avoid
@@ -3809,7 +4206,7 @@ Compatibility package for older packages.")
(define-public ghc-nats
(package
(name "ghc-nats")
- (version "1")
+ (version "1.1.1")
(source
(origin
(method url-fetch)
@@ -3819,7 +4216,7 @@ Compatibility package for older packages.")
".tar.gz"))
(sha256
(base32
- "0r6s8l4s0yq3x2crrkv0b8zac13magfasr9v8hnq6rn1icsfhic0"))))
+ "1kfl2yy97nb7q0j17v96rl73xvi3z4db9bk0xychc76dax41n78k"))))
(build-system haskell-build-system)
(arguments `(#:haddock? #f))
(inputs
@@ -3858,7 +4255,7 @@ given term should not exist.")
(define-public ghc-kan-extensions
(package
(name "ghc-kan-extensions")
- (version "4.2.3")
+ (version "5.0.1")
(source
(origin
(method url-fetch)
@@ -3868,7 +4265,7 @@ given term should not exist.")
".tar.gz"))
(sha256
(base32
- "0iywbadpy8s3isfzlx9dlz3apaywhqq4gdbxkwygksq8pzdhwkrk"))))
+ "1qm0kf4krmyjbjynn96ab0h3q117vwcia5nin7n2b8b4f3jrzph1"))))
(build-system haskell-build-system)
(inputs
`(("ghc-adjunctions" ,ghc-adjunctions)
@@ -3885,10 +4282,31 @@ given term should not exist.")
forms of the Yoneda lemma, and (co)density (co)monads for Haskell.")
(license license:bsd-3)))
+(define-public ghc-call-stack
+ (package
+ (name "ghc-call-stack")
+ (version "0.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "call-stack/call-stack-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1qmihf5jafmc79sk52l6gpx75f5bnla2lp62kh3p34x3j84mwpzj"))))
+ (build-system haskell-build-system)
+ (inputs `(("ghc-nanospec" ,ghc-nanospec)))
+ (home-page "https://github.com/sol/call-stack#readme")
+ (synopsis "Use GHC call-stacks in a backward compatible way")
+ (description "This package provides a compatibility layer for using GHC
+call stacks with different versions of the compiler.")
+ (license license:expat)))
+
(define-public ghc-statevar
(package
(name "ghc-statevar")
- (version "1.1.0.1")
+ (version "1.1.0.4")
(source
(origin
(method url-fetch)
@@ -3898,7 +4316,7 @@ forms of the Yoneda lemma, and (co)density (co)monads for Haskell.")
".tar.gz"))
(sha256
(base32
- "1ap51cvwq61xckx5hw44l82ihbxvsq3263xr5hqg42c5qp67kbhf"))))
+ "1dzz9l0haswgag9x56q7n57kw18v7nhmzkjyr61nz9y9npn8vmks"))))
(build-system haskell-build-system)
(inputs
`(("ghc-stm" ,ghc-stm)))
@@ -3911,22 +4329,20 @@ in the @code{IO} monad, like @code{IORef}s or parts of the OpenGL state.")
(define-public ghc-lens
(package
(name "ghc-lens")
- (version "4.13")
+ (version "4.15.4")
(source
(origin
(method url-fetch)
- (uri (string-append
- "https://hackage.haskell.org/package/lens/lens-"
- version
- ".tar.gz"))
+ (uri (string-append "https://hackage.haskell.org/package/lens/lens-"
+ version ".tar.gz"))
(sha256
(base32
- "0g4g0xksrb2m8wgsmraaq8qnk1sssb42kr65fc7clgyid6zyfmim"))))
+ "1lkwlnhgpgnsz046mw4qs0fa7h4l012gilrr3nf3spllsy3pnbkl"))))
(build-system haskell-build-system)
- (arguments `(#:tests? #f)) ; FIXME: doctest packagedb propagation problem.
(inputs
`(("ghc-base-orphans" ,ghc-base-orphans)
("ghc-bifunctors" ,ghc-bifunctors)
+ ("ghc-doctest" ,ghc-doctest-0.13)
("ghc-distributive" ,ghc-distributive)
("ghc-exceptions" ,ghc-exceptions)
("ghc-free" ,ghc-free)
@@ -3935,6 +4351,7 @@ in the @code{IO} monad, like @code{IORef}s or parts of the OpenGL state.")
("ghc-reflection" ,ghc-reflection)
("ghc-semigroupoids" ,ghc-semigroupoids)
("ghc-vector" ,ghc-vector)
+ ("ghc-call-stack" ,ghc-call-stack)
("ghc-comonad" ,ghc-comonad)
("ghc-contravariant" ,ghc-contravariant)
("ghc-hashable" ,ghc-hashable)
@@ -3950,6 +4367,14 @@ in the @code{IO} monad, like @code{IORef}s or parts of the OpenGL state.")
("ghc-nats" ,ghc-nats)
("ghc-simple-reflect" ,ghc-simple-reflect)
("hlint" ,hlint)))
+ (native-inputs
+ `(("cabal-doctest" ,cabal-doctest)
+ ("ghc-hunit" ,ghc-hunit)
+ ("ghc-test-framework" ,ghc-test-framework)
+ ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
+ ("ghc-test-framework-th" ,ghc-test-framework-th)
+ ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)
+ ("ghc-quickcheck" ,ghc-quickcheck)))
(home-page "https://github.com/ekmett/lens/")
(synopsis "Lenses, Folds and Traversals")
(description "This library provides @code{Control.Lens}. The combinators
@@ -3961,7 +4386,7 @@ indexed variants.")
(define-public ghc-cheapskate
(package
(name "ghc-cheapskate")
- (version "0.1.0.4")
+ (version "0.1.1")
(source
(origin
(method url-fetch)
@@ -3971,20 +4396,16 @@ indexed variants.")
".tar.gz"))
(sha256
(base32
- "0drx1hlqvdcrij4097q6bxhbfcqm73jsqv1wwhd3hsnjdmr46ch2"))))
+ "1hiqi7h76shjzs2zj0j8g6wnq2hbiq1hmfafdazr97fba2zl2432"))))
(build-system haskell-build-system)
(inputs
- `(("ghc-aeson" ,ghc-aeson)
+ `(("ghc-mtl" ,ghc-mtl)
+ ("ghc-text" ,ghc-text)
("ghc-blaze-html" ,ghc-blaze-html)
+ ("ghc-xss-sanitize" ,ghc-xss-sanitize)
("ghc-data-default" ,ghc-data-default)
- ("ghc-http-types" ,ghc-http-types)
- ("ghc-mtl" ,ghc-mtl)
("ghc-syb" ,ghc-syb)
- ("ghc-text" ,ghc-text)
- ("ghc-uniplate" ,ghc-uniplate)
- ("ghc-wai-extra" ,ghc-wai-extra)
- ("ghc-wai" ,ghc-wai)
- ("ghc-xss-sanitize" ,ghc-xss-sanitize)))
+ ("ghc-uniplate" ,ghc-uniplate)))
(home-page "https://github.com/jgm/cheapskate")
(synopsis "Experimental markdown processor")
(description "Cheapskate is an experimental Markdown processor in pure
@@ -3997,7 +4418,7 @@ cross-site scripting (@dfn{XSS}) attacks.")
(define-public ghc-bifunctors
(package
(name "ghc-bifunctors")
- (version "5")
+ (version "5.5.2")
(source
(origin
(method url-fetch)
@@ -4007,11 +4428,19 @@ cross-site scripting (@dfn{XSS}) attacks.")
".tar.gz"))
(sha256
(base32
- "13990xdgx0n23qgi18ghhmsywj5zkr0a5bim0g8a4nzi0cx95ps1"))))
+ "04fbsysm6zl8kmvqgffmrqa9bxl9dl2gibrd51asqzg737mb4ark"))))
(build-system haskell-build-system)
(inputs
- `(("ghc-tagged" ,ghc-tagged)
+ `(("ghc-base-orphans" ,ghc-base-orphans)
+ ("ghc-comonad" ,ghc-comonad)
+ ("ghc-th-abstraction" ,ghc-th-abstraction)
+ ("ghc-transformers-compat" ,ghc-transformers-compat)
+ ("ghc-tagged" ,ghc-tagged)
("ghc-semigroups" ,ghc-semigroups)))
+ (native-inputs
+ `(("ghc-hspec" ,ghc-hspec)
+ ("hspec-discover" ,hspec-discover)
+ ("ghc-quickcheck" ,ghc-quickcheck)))
(home-page "https://github.com/ekmett/bifunctors/")
(synopsis "Bifunctors for Haskell")
(description "This package provides bifunctors for Haskell.")
@@ -4020,7 +4449,7 @@ cross-site scripting (@dfn{XSS}) attacks.")
(define-public ghc-semigroupoids
(package
(name "ghc-semigroupoids")
- (version "5.0.0.4")
+ (version "5.1")
(source
(origin
(method url-fetch)
@@ -4030,7 +4459,7 @@ cross-site scripting (@dfn{XSS}) attacks.")
".tar.gz"))
(sha256
(base32
- "1jf7jnfhdvl6p18wdr21yi2fim1xb8alcn6szhrdswj0dkilgq6d"))))
+ "0dgqc59p4xx5cl8qkpm6sn4wd3n59rq7l6din76hf10bnklqrb0n"))))
(build-system haskell-build-system)
(arguments `(#:tests? #f)) ; FIXME: doctest packagedb propagation problem.
(inputs
@@ -4151,7 +4580,7 @@ definition of @code{Monad}.")
(define-public ghc-adjunctions
(package
(name "ghc-adjunctions")
- (version "4.2.2")
+ (version "4.3")
(source
(origin
(method url-fetch)
@@ -4161,7 +4590,7 @@ definition of @code{Monad}.")
".tar.gz"))
(sha256
(base32
- "00p030iypjzjib8pxz1x6mxfi59wvyrwjj11zv9bh766dgkdbwjq"))))
+ "1k1ykisf96i4g2zm47c45md7p42c4vsp9r73392pz1g8mx7s2j5r"))))
(build-system haskell-build-system)
(inputs
`(("ghc-profunctors" ,ghc-profunctors)
@@ -4212,7 +4641,7 @@ monad transformer (instead of the IO monad).")
(define-public ghc-fast-logger
(package
(name "ghc-fast-logger")
- (version "2.4.1")
+ (version "2.4.11")
(source
(origin
(method url-fetch)
@@ -4222,12 +4651,13 @@ monad transformer (instead of the IO monad).")
".tar.gz"))
(sha256
(base32
- "0kjk1861qcls8m8y7i55msfpprws5wk6c5mxzi35g2qbl2sih4p5"))))
+ "1ad2vq4nifdxshqk9yrmghqizhkgybfz134kpr6padglb2mxxrdv"))))
(build-system haskell-build-system)
(inputs
- `(("ghc-bytestring-builder" ,ghc-bytestring-builder)
- ("ghc-auto-update" ,ghc-auto-update)
- ("ghc-text" ,ghc-text)))
+ `(("ghc-auto-update" ,ghc-auto-update)
+ ("ghc-easy-file" ,ghc-easy-file)
+ ("ghc-text" ,ghc-text)
+ ("ghc-unix-time" ,ghc-unix-time)))
(native-inputs
`(("hspec-discover" ,hspec-discover)
("ghc-hspec" ,ghc-hspec)))
@@ -4239,7 +4669,7 @@ monad transformer (instead of the IO monad).")
(define-public ghc-doctest
(package
(name "ghc-doctest")
- (version "0.10.1")
+ (version "0.11.0")
(source
(origin
(method url-fetch)
@@ -4249,7 +4679,7 @@ monad transformer (instead of the IO monad).")
".tar.gz"))
(sha256
(base32
- "1jbyhzbi2hfrfg7vbkpj6vriaap8cn99nnmzwcfscwaijz09jyrm"))))
+ "0xv4vx1r3mk7cmiwywzrq25545cx3i7imhcx33mk47r88j5c49fj"))))
(build-system haskell-build-system)
(arguments `(#:tests? #f)) ; FIXME: missing test framework
(inputs
@@ -4270,10 +4700,41 @@ It is modeled after doctest for Python, see
@uref{http://docs.python.org/library/doctest.html, the Doctest website}.")
(license license:expat)))
+(define-public ghc-doctest-0.12
+ (package (inherit ghc-doctest)
+ (name "ghc-doctest")
+ (version "0.12.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://hackage.haskell.org/package/doctest/doctest-"
+ version
+ ".tar.gz"))
+ (sha256
+ (base32
+ "13h549cpgcvb7c54c7wif28g5wak84dxc3ais0hlqhzk1q6la91a"))))
+ (inputs
+ `(("ghc-code-page" ,ghc-code-page)
+ ,@(package-inputs ghc-doctest)))))
+
+(define-public ghc-doctest-0.13
+ (package (inherit ghc-doctest-0.12)
+ (name "ghc-doctest")
+ (version "0.13.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "doctest/doctest-" version ".tar.gz"))
+ (sha256
+ (base32
+ "08g3nmpqbnbkxc95d65hkhfabwax10qrq51vlynr342npn40mn2b"))))))
+
(define-public ghc-lifted-base
(package
(name "ghc-lifted-base")
- (version "0.2.3.6")
+ (version "0.2.3.8")
(source
(origin
(method url-fetch)
@@ -4283,7 +4744,7 @@ It is modeled after doctest for Python, see
".tar.gz"))
(sha256
(base32
- "1yz14a1rsgknwyl08n4kxrlc26hfwmb95a3c2drbnsgmhdyq7iap"))))
+ "17yz4n7q96x4cp8vxai8csn2vmpigxvipkfh48arahf91f0xy18n"))))
(build-system haskell-build-system)
(arguments `(#:tests? #f)) ; FIXME: Missing testing libraries.
(inputs
@@ -4303,7 +4764,7 @@ Kaseorg.")
(define-public ghc-word8
(package
(name "ghc-word8")
- (version "0.1.2")
+ (version "0.1.3")
(source
(origin
(method url-fetch)
@@ -4313,7 +4774,7 @@ Kaseorg.")
".tar.gz"))
(sha256
(base32
- "1pbn8ra3qhwvw07p375cdmp7jzlg07hgdcr4cpscz3h7b9sy7fiw"))))
+ "12jx7f13d2h1djq4fh4dyrab61sm49mj1w61j3rzp2vjfm696c16"))))
(build-system haskell-build-system)
(native-inputs
`(("ghc-hspec" ,ghc-hspec)
@@ -4346,10 +4807,42 @@ functions for breaking or splitting on substrings and replacing all
occurrences of a substring (the first in case of overlaps) with another.")
(license license:bsd-3)))
+(define-public ghc-integer-logarithms
+ (package
+ (name "ghc-integer-logarithms")
+ (version "1.0.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "integer-logarithms/integer-logarithms-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0w5mhak181zi6qr5h2zbcs9ymaqacisp9jwk99naz6s8zz5rq1ii"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-tasty" ,ghc-tasty)
+ ("ghc-tasty-smallcheck" ,ghc-tasty-smallcheck)
+ ("ghc-tasty-quickcheck" ,ghc-tasty-quickcheck)
+ ("ghc-tasty-hunit" ,ghc-tasty-hunit)
+ ("ghc-quickcheck" ,ghc-quickcheck)
+ ("ghc-smallcheck" ,ghc-smallcheck)))
+ (home-page "https://github.com/phadej/integer-logarithms")
+ (synopsis "Integer logarithms")
+ (description
+ "This package provides the following modules:
+@code{Math.NumberTheory.Logarithms} and
+@code{Math.NumberTheory.Powers.Integer} from the @code{arithmoi} package,
+@code{GHC.Integer.Logarithms.Compat} and
+@code{Math.NumberTheory.Power.Natural}, as well as some additional functions
+in migrated modules.")
+ (license license:expat)))
+
(define-public ghc-scientific
(package
(name "ghc-scientific")
- (version "0.3.4.2")
+ (version "0.3.5.2")
(source
(origin
(method url-fetch)
@@ -4359,12 +4852,13 @@ occurrences of a substring (the first in case of overlaps) with another.")
".tar.gz"))
(sha256
(base32
- "0mimdkva0cgzaychr6whv9if29z0r5wwhkss9bmd4rz8kq1kgngn"))))
+ "0msnjz7ml0zycw9bssslxbg0nigziw7vs5km4q3vjbs8jpzpkr2w"))))
(build-system haskell-build-system)
(inputs
- `(("ghc-hashable" ,ghc-hashable)
- ("ghc-vector" ,ghc-vector)
+ `(("ghc-integer-logarithms" ,ghc-integer-logarithms)
("ghc-text" ,ghc-text)
+ ("ghc-hashable" ,ghc-hashable)
+ ("ghc-primitive" ,ghc-primitive)
("ghc-tasty" ,ghc-tasty)
("ghc-tasty-ant-xml" ,ghc-tasty-ant-xml)
("ghc-tasty-hunit" ,ghc-tasty-hunit)
@@ -4428,10 +4922,33 @@ using a simple box model.")
providing an 'rnf' implementation.")
(license license:bsd-3)))
+(define-public ghc-string-qq
+ (package
+ (name "ghc-string-qq")
+ (version "0.0.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://hackage.haskell.org/package/string-qq/string-qq-"
+ version
+ ".tar.gz"))
+ (sha256
+ (base32
+ "0662m3i5xrdrr95w829bszkhp88mj9iy1zya54vk2sl5hz9wlmwp"))))
+ (build-system haskell-build-system)
+ (home-page "http://hackage.haskell.org/package/string-qq")
+ (synopsis
+ "QuasiQuoter for non-interpolated strings, texts and bytestrings.")
+ (description
+ "This package provides a quasiquoter for non-interpolated strings, texts
+and bytestrings.")
+ (license license:public-domain)))
+
(define-public ghc-pandoc-types
(package
(name "ghc-pandoc-types")
- (version "1.16.1.1")
+ (version "1.17.3.1")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
@@ -4439,12 +4956,20 @@ providing an 'rnf' implementation.")
version ".tar.gz"))
(sha256
(base32
- "094mzgdxva84kcpjf9m8b5n3chm1wm44bzflh5x6xhddz6pb7zpq"))))
+ "0dhp5bcjl6605n2chiab5rp51zir3671gxkmwy34znh0s3vp85jb"))))
(build-system haskell-build-system)
+ (arguments
+ `(#:configure-flags (list "--allow-newer=QuickCheck")))
(inputs
`(("ghc-syb" ,ghc-syb)
("ghc-aeson" ,ghc-aeson)
- ("ghc-deepseq-generics" ,ghc-deepseq-generics)))
+ ("ghc-string-qq" ,ghc-string-qq)))
+ (native-inputs
+ `(("ghc-quickcheck" ,ghc-quickcheck)
+ ("ghc-test-framework" ,ghc-test-framework)
+ ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
+ ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)
+ ("ghc-hunit" ,ghc-hunit)))
(home-page "http://johnmacfarlane.net/pandoc")
(synopsis "Types for representing a structured document")
(description
@@ -4456,14 +4981,14 @@ building up, manipulating and serialising @code{Pandoc} structures.")
(define-public ghc-texmath
(package
(name "ghc-texmath")
- (version "0.8.6.5")
+ (version "0.10.1.1")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
"texmath/texmath-" version ".tar.gz"))
(sha256
(base32
- "143c8k7dyhwa9blpa8svy23ybx7i4xzb9jnfcimj8iigizbw7y1k"))))
+ "0q2fld5mdcd6j1n3rrg3bjpndbgbn17cwg0xbnvscrpa0s767jaj"))))
(build-system haskell-build-system)
(inputs
`(("ghc-syb" ,ghc-syb)
@@ -4512,15 +5037,19 @@ providing the PCRE backend to accompany regex-base, with bundled code from
(define-public ghc-diff
(package
(name "ghc-diff")
- (version "0.3.2")
+ (version "0.3.4")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
"Diff/Diff-" version ".tar.gz"))
(sha256
(base32
- "13iqqmpadcm7fvqwbfrz94w030rvjh66w2bdls1253128ac2n0vz"))))
+ "0bqcdvhxx8dmqc3793m6axg813wv9ldz2j37f1wygbbrbbndmdvp"))))
(build-system haskell-build-system)
+ (native-inputs
+ `(("ghc-quickcheck" ,ghc-quickcheck)
+ ("ghc-test-framework" ,ghc-test-framework)
+ ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)))
(home-page "http://hub.darcs.net/sterlingclover/Diff")
(synopsis "O(ND) diff algorithm in Haskell")
(description
@@ -4587,6 +5116,34 @@ CommonMark, a fully specified variant of Markdown. It includes bundled libcmark
sources, and does not require prior installation of the C library.")
(license license:bsd-3)))
+(define-public ghc-cmark-gfm
+ (package
+ (name "ghc-cmark-gfm")
+ (version "0.1.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "cmark-gfm/cmark-gfm-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1fkisbrydmdx5h8yad09fzk8h1b1j53r02g7vb81izgdwj9b673k"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-text" ,ghc-text)))
+ (native-inputs
+ `(("ghc-hunit" ,ghc-hunit)))
+ (home-page "https://github.com/kivikakk/cmark-gfm-hs")
+ (synopsis
+ "Fast, accurate GitHub Flavored Markdown parser and renderer")
+ (description
+ "This package provides Haskell bindings for libcmark-gfm, the reference
+parser for GitHub Flavored Markdown, a fully specified variant of Markdown.
+It includes sources for libcmark-gfm and does not require prior installation
+of the C library.")
+ (license license:bsd-3)))
+
(define-public ghc-executable-path
(package
(name "ghc-executable-path")
@@ -4667,20 +5224,41 @@ asynchronous exceptions.")
"This deprecated library provides an implementation of packed strings.")
(license license:bsd-3)))
+(define-public ghc-th-abstraction
+ (package
+ (name "ghc-th-abstraction")
+ (version "0.2.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "th-abstraction/th-abstraction-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0g42h6wnj2awc5ryhbvx009wd8w75pn66bjzsq1z4s3xajd2hbp5"))))
+ (build-system haskell-build-system)
+ (home-page "https://github.com/glguy/th-abstraction")
+ (synopsis "Nicer interface for reified information about data types")
+ (description
+ "This package normalizes variations in the interface for inspecting
+datatype information via Template Haskell so that packages and support a
+single, easier to use informational datatype while supporting many versions of
+Template Haskell.")
+ (license license:isc)))
+
(define-public ghc-th-lift
(package
(name "ghc-th-lift")
- (version "0.7.5")
+ (version "0.7.8")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
"th-lift/th-lift-" version ".tar.gz"))
(sha256
(base32
- "13xdkk1chdghf059sfx8d3d8r0mj1dbzdi5kf2zf0mjmz3qq7m7k"))))
+ "0ay10b78x3969rpqqrgzy8srkl6iby2cljbf3mm17na8x22k7y1c"))))
(build-system haskell-build-system)
- (inputs
- `(("ghc-packedstring" ,ghc-packedstring)))
(home-page "https://github.com/mboes/th-lift")
(synopsis "Derive Template Haskell's Lift class for datatypes")
(description
@@ -4688,10 +5266,36 @@ asynchronous exceptions.")
datatypes.")
(license license:bsd-3)))
+(define-public ghc-th-lift-instances
+ (package
+ (name "ghc-th-lift-instances")
+ (version "0.1.11")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "th-lift-instances/th-lift-instances-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1f56cp6ckcalld5jchv0kxpjkwcsixd7smd0g7r8cg67ppx6m90x"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-th-lift" ,ghc-th-lift)
+ ("ghc-vector" ,ghc-vector)
+ ("ghc-text" ,ghc-text)
+ ("ghc-quickcheck" ,ghc-quickcheck)))
+ (home-page "https://github.com/bennofs/th-lift-instances/")
+ (synopsis "Lift instances for template-haskell for common data types.")
+ (description "Most data types in the Haskell platform do not have Lift
+instances. This package provides orphan instances for @code{containers},
+@code{text}, @code{bytestring} and @code{vector}.")
+ (license license:bsd-3)))
+
(define-public ghc-th-expand-syns
(package
(name "ghc-th-expand-syns")
- (version "0.3.0.6")
+ (version "0.4.0.0")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
@@ -4699,7 +5303,7 @@ datatypes.")
version ".tar.gz"))
(sha256
(base32
- "03qv93pyqk8all39knsf0mzmbfdck5x61kqnyn8rbisw5c1ymx6j"))))
+ "1sjy7a17zwyvlbkc8gklii67sy78wpnw35fyb00lsbnpk4cryd2r"))))
(build-system haskell-build-system)
(inputs
`(("ghc-syb" ,ghc-syb)))
@@ -4713,7 +5317,7 @@ datatypes.")
(define-public ghc-th-reify-many
(package
(name "ghc-th-reify-many")
- (version "0.1.3")
+ (version "0.1.6")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
@@ -4721,7 +5325,7 @@ datatypes.")
version ".tar.gz"))
(sha256
(base32
- "00hryljcs434wcv1vaamfdbjk857f46djxv7mlwplkl3zsmfhlfx"))))
+ "1b76zjxkj0v0n8zj9l0nwav2irm0c43rx6qjihfw8klmmxvx59df"))))
(build-system haskell-build-system)
(inputs
`(("ghc-mtl" ,ghc-mtl)
@@ -4739,17 +5343,18 @@ function which generates instances.")
(define-public ghc-th-orphans
(package
(name "ghc-th-orphans")
- (version "0.13.0")
+ (version "0.13.2")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
"th-orphans/th-orphans-" version ".tar.gz"))
(sha256
(base32
- "105y03bxh0a2r69l603i7md17gg1vxs1jj1n40pn5q486lmfxbmx"))))
+ "0102vkyzpgnp2fys8pvw4khrhrh2y1b8dp1slgvn020vg4s351mc"))))
(build-system haskell-build-system)
(inputs
`(("ghc-th-lift" ,ghc-th-lift)
+ ("ghc-th-lift-instances" ,ghc-th-lift-instances)
("ghc-th-reify-many" ,ghc-th-reify-many)
("ghc-mtl" ,ghc-mtl)
("ghc-generic-deriving" ,ghc-generic-deriving)))
@@ -4811,7 +5416,7 @@ info for more informative bug reports.")
(define-public ghc-haskell-src-meta
(package
(name "ghc-haskell-src-meta")
- (version "0.6.0.12")
+ (version "0.8.0.2")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
@@ -4819,12 +5424,16 @@ info for more informative bug reports.")
version ".tar.gz"))
(sha256
(base32
- "1mzbfrfvl6pj8068w3m6alzry1403ir1gmz3czg66n5z198l4dql"))))
+ "12rc4v5dbbbcwdp7j8isvnm9vqpazv124j5kdfwlgwgwjhxi8ysb"))))
(build-system haskell-build-system)
(inputs
`(("ghc-haskell-src-exts" ,ghc-haskell-src-exts)
("ghc-syb" ,ghc-syb)
("ghc-th-orphans" ,ghc-th-orphans)))
+ (native-inputs
+ `(("ghc-hunit" ,ghc-hunit)
+ ("ghc-test-framework" ,ghc-test-framework)
+ ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)))
(home-page "https://hackage.haskell.org/package/haskell-src-meta")
(synopsis "Parse source to template-haskell abstract syntax")
(description
@@ -4870,7 +5479,7 @@ space as enumerator/iteratee and pipes.")
(define-public ghc-logging-facade
(package
(name "ghc-logging-facade")
- (version "0.1.0")
+ (version "0.1.1")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
@@ -4878,7 +5487,7 @@ space as enumerator/iteratee and pipes.")
version ".tar.gz"))
(sha256
(base32
- "0zhdbjyj0j9by19rma9alxysrxnnl3s4kks4zk4bx0dg5xa0264y"))))
+ "18ldv6rsff480rqpbs3iabjpvn1fhw0i2a0g80jnhxg9ajfz5yb0"))))
(build-system haskell-build-system)
(native-inputs
`(("ghc-hspec" ,ghc-hspec)
@@ -4893,18 +5502,19 @@ back-ends.")
(define-public ghc-mockery
(package
(name "ghc-mockery")
- (version "0.3.2")
+ (version "0.3.3")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
"mockery/mockery-" version ".tar.gz"))
(sha256
(base32
- "0m0lp2z63sgkylz5318j53r5hnrkp705qh7nqbb149ir4gy7g1bg"))))
+ "1m7sq2vclgir3qbpngzl3g87ks4034blwwf7p3h02c0jlcwpl5b1"))))
(build-system haskell-build-system)
(inputs
`(("ghc-temporary" ,ghc-temporary)
- ("ghc-logging-facade" ,ghc-logging-facade)))
+ ("ghc-logging-facade" ,ghc-logging-facade)
+ ("ghc-base-compat" ,ghc-base-compat)))
(native-inputs
`(("ghc-hspec" ,ghc-hspec)
("hspec-discover" ,hspec-discover)))
@@ -4917,14 +5527,14 @@ back-ends.")
(define-public ghc-yaml
(package
(name "ghc-yaml")
- (version "0.8.15.1")
+ (version "0.8.28")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
"yaml/yaml-" version ".tar.gz"))
(sha256
(base32
- "0v6c435xmgm99zxb30pqr7lhkb2a56wxqp70g4hjz8p7rj0vichx"))))
+ "0swgkzkfrwj0ac7lssn8rnrdfmh3lcsdn5fbq2iwv55di6jbc0pp"))))
(build-system haskell-build-system)
(inputs
`(("ghc-conduit" ,ghc-conduit)
@@ -4935,8 +5545,9 @@ back-ends.")
("ghc-text" ,ghc-text)
("ghc-attoparsec" ,ghc-attoparsec)
("ghc-scientific" ,ghc-scientific)
+ ("ghc-semigroups" ,ghc-semigroups)
+ ("ghc-temporary" ,ghc-temporary)
("ghc-enclosed-exceptions" ,ghc-enclosed-exceptions)
- ("ghc-aeson-qq" ,ghc-aeson-qq)
("ghc-base-compat" ,ghc-base-compat)))
(native-inputs
`(("ghc-hspec" ,ghc-hspec)
@@ -5022,25 +5633,28 @@ TIFF and GIF formats.")
(define-public ghc-hslua
(package
(name "ghc-hslua")
- (version "0.4.1")
+ (version "0.9.5")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
"hslua/hslua-" version ".tar.gz"))
(sha256
(base32
- "0gqp6qhp4v24kzv2j49kgk7bxqzw0w10x0zr0r2j9wkfavqb9wid"))))
+ "1j2zk7f7nyywg2b0n6kb2yf6ljc7cn2sk9jz0h76g3ag2b70l12n"))))
(build-system haskell-build-system)
(arguments
`(#:configure-flags '("-fsystem-lua")))
(inputs
- `(("lua" ,lua-5.1)
+ `(("lua" ,lua)
+ ("ghc-exceptions" ,ghc-exceptions)
+ ("ghc-fail" ,ghc-fail)
+ ("ghc-mtl" ,ghc-mtl)
("ghc-text" ,ghc-text)))
(native-inputs
- `(("ghc-hspec" ,ghc-hspec)
- ("ghc-hspec-contrib" ,ghc-hspec-contrib)
- ("hspec-discover" ,hspec-discover)
- ("ghc-hunit" ,ghc-hunit)
+ `(("ghc-tasty" ,ghc-tasty)
+ ("ghc-tasty-expected-failure" ,ghc-tasty-expected-failure)
+ ("ghc-tasty-hunit" ,ghc-tasty-hunit)
+ ("ghc-tasty-quickcheck" ,ghc-tasty-quickcheck)
("ghc-quickcheck" ,ghc-quickcheck)
("ghc-quickcheck-instances" ,ghc-quickcheck-instances)))
(home-page "https://hackage.haskell.org/package/hslua")
@@ -5050,6 +5664,34 @@ TIFF and GIF formats.")
described in @url{http://www.lua.org/}.")
(license license:expat)))
+(define-public ghc-hslua-module-text
+ (package
+ (name "ghc-hslua-module-text")
+ (version "0.1.2.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "hslua-module-text/hslua-module-text-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0bcfpb1dhnxp0gr376ai4w7vczr9zrjl1r3r6w7kcxivfkwq9cxf"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-hslua" ,ghc-hslua)
+ ("ghc-text" ,ghc-text)))
+ (native-inputs
+ `(("ghc-tasty" ,ghc-tasty)
+ ("ghc-tasty-hunit" ,ghc-tasty-hunit)))
+ (home-page "https://github.com/hslua/hslua-module-text")
+ (synopsis "Lua module for text")
+ (description
+ "This package provides a UTF-8 aware subset of Lua's @code{string} module
+for Haskell. The functions provided by this module are @code{upper},
+@code{lower}, @code{len}, @code{reverse}, and @code{sub}.")
+ (license license:expat)))
+
(define-public ghc-byteable
(package
(name "ghc-byteable")
@@ -5073,14 +5715,14 @@ wrapping a bytestring with stronger and more meaniful name.")
(define-public ghc-hourglass
(package
(name "ghc-hourglass")
- (version "0.2.9")
+ (version "0.2.10")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
"hourglass/hourglass-" version ".tar.gz"))
(sha256
(base32
- "1xha17nwzxdjizbcp63d2142c6q051y77facs7xribgcl5iz2m4v"))))
+ "104d1yd84hclprg740nkz60vx589mnm094zriw6zczbgg8nkclym"))))
(build-system haskell-build-system)
(inputs
`(("ghc-mtl" ,ghc-mtl)
@@ -5153,14 +5795,14 @@ set, memory copy, ..) and more")
(define-public ghc-socks
(package
(name "ghc-socks")
- (version "0.5.4")
+ (version "0.5.5")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
"socks/socks-" version ".tar.gz"))
(sha256
(base32
- "1nmldlwxqasmg359i2aa3a903gi3lmnlspvf12xk49jrg3mf3dg9"))))
+ "0s689w1hh9g8ifl75xhzbv96ir07hwn04b4lgvbxzl8swa9ylir6"))))
(build-system haskell-build-system)
(inputs
`(("ghc-cereal" ,ghc-cereal)
@@ -5174,7 +5816,7 @@ set, memory copy, ..) and more")
(define-public ghc-connection
(package
(name "ghc-connection")
- (version "0.2.5")
+ (version "0.2.6")
(source (origin
(method url-fetch)
(uri (string-append "https://hackage.haskell.org/package/"
@@ -5182,7 +5824,7 @@ set, memory copy, ..) and more")
version ".tar.gz"))
(sha256
(base32
- "090il95jnm7ihwvcx3s9v6iwnp37nnsdx15q7722l845g51d95c8"))))
+ "1c1prsgad669cmf6qrqlb5hmh0dnam2imijqzpwcr4ja14l6rh83"))))
(build-system haskell-build-system)
(inputs
`(("ghc-byteable" ,ghc-byteable)
@@ -5202,10 +5844,85 @@ needs. It provides a very simple API to create sockets to a destination with
the choice of SSL/TLS, and SOCKS.")
(license license:bsd-3)))
+(define-public ghc-skylighting
+ (package
+ (name "ghc-skylighting")
+ (version "0.5.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/skylighting-"
+ version "/skylighting-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0l5lhhqqlfaq1fs7pn3n3b25kmazk8p4ahwvhagbrhcbm5hsigdg"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-aeson" ,ghc-aeson)
+ ("ghc-ansi-terminal" ,ghc-ansi-terminal)
+ ("ghc-attoparsec" ,ghc-attoparsec)
+ ("ghc-base64-bytestring" ,ghc-base64-bytestring)
+ ("ghc-blaze-html" ,ghc-blaze-html)
+ ("ghc-case-insensitive" ,ghc-case-insensitive)
+ ("ghc-colour" ,ghc-colour)
+ ("ghc-diff" ,ghc-diff)
+ ("ghc-hxt" ,ghc-hxt)
+ ("ghc-mtl" ,ghc-mtl)
+ ("ghc-pretty-show" ,ghc-pretty-show)
+ ("ghc-regex-pcre-builtin" ,ghc-regex-pcre-builtin)
+ ("ghc-safe" ,ghc-safe)
+ ("ghc-text" ,ghc-text)
+ ("ghc-utf8-string" ,ghc-utf8-string)))
+ (native-inputs
+ `(("ghc-hunit" ,ghc-hunit)
+ ("ghc-quickcheck" ,ghc-quickcheck)
+ ("ghc-tasty" ,ghc-tasty)
+ ("ghc-tasty-golden" ,ghc-tasty-golden)
+ ("ghc-tasty-hunit" ,ghc-tasty-hunit)
+ ("ghc-tasty-quickcheck" ,ghc-tasty-quickcheck)))
+ (home-page "https://hackage.haskell.org/package/skylighting")
+ (synopsis "Syntax highlighting library")
+ (description "Skylighting is a syntax highlighting library with support
+for over one hundred languages. It derives its tokenizers from XML syntax
+definitions used by KDE's @code{KSyntaxHighlighting} framework, so any syntax
+supported by that framework can be added. An optional command-line program is
+provided. Skylighting is intended to be the successor to highlighting-kate.")
+ (license license:gpl2)))
+
+(define-public ghc-doctemplates
+ (package
+ (name "ghc-doctemplates")
+ (version "0.2.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "doctemplates/doctemplates-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1bfs2kl5j5al2w2y4qpbn68p0xsnb65r7h51l356kpkzc326646p"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-aeson" ,ghc-aeson)
+ ("ghc-blaze-markup" ,ghc-blaze-markup)
+ ("ghc-blaze-html" ,ghc-blaze-html)
+ ("ghc-text" ,ghc-text)
+ ("ghc-vector" ,ghc-vector)
+ ("ghc-parsec" ,ghc-parsec)
+ ("ghc-unordered-containers" ,ghc-unordered-containers)
+ ("ghc-scientific" ,ghc-scientific)))
+ (native-inputs
+ `(("ghc-hspec" ,ghc-hspec)))
+ (home-page "https://github.com/jgm/doctemplates#readme")
+ (synopsis "Pandoc-style document templates")
+ (description
+ "This package provides a simple text templating system used by pandoc.")
+ (license license:bsd-3)))
+
(define-public ghc-pandoc
(package
(name "ghc-pandoc")
- (version "1.17.2")
+ (version "2.0.6")
(source
(origin
(method url-fetch)
@@ -5213,53 +5930,56 @@ the choice of SSL/TLS, and SOCKS.")
version ".tar.gz"))
(sha256
(base32
- "1v78zq12p71gq0pc24h08inxcq5gxd0xb7m5ds0xw9pv9l2pswl1"))))
+ "1vhj6splykksb1mkxv5cs0361nj12qn23a3y1i8j5dc637lkdwpj"))))
(build-system haskell-build-system)
(inputs
- `(("ghc-syb" ,ghc-syb)
- ("ghc-unordered-containers" ,ghc-unordered-containers)
- ("ghc-parsec" ,ghc-parsec)
- ("ghc-mtl" ,ghc-mtl)
- ("ghc-text" ,ghc-text)
- ("ghc-zip-archive" ,ghc-zip-archive)
- ("ghc-http" ,ghc-http)
- ("ghc-texmath" ,ghc-texmath)
- ("ghc-xml" ,ghc-xml)
- ("ghc-random" ,ghc-random)
- ("ghc-extensible-exceptions" ,ghc-extensible-exceptions)
- ("ghc-pandoc-types" ,ghc-pandoc-types)
- ("ghc-aeson" ,ghc-aeson)
- ("ghc-tagsoup" ,ghc-tagsoup)
+ `(("ghc-aeson" ,ghc-aeson)
+ ("ghc-aeson-pretty" ,ghc-aeson-pretty)
("ghc-base64-bytestring" ,ghc-base64-bytestring)
- ("ghc-zlib" ,ghc-zlib)
- ("ghc-highlighting-kate" ,ghc-highlighting-kate)
- ("ghc-data-default" ,ghc-data-default)
- ("ghc-temporary" ,ghc-temporary)
("ghc-blaze-html" ,ghc-blaze-html)
("ghc-blaze-markup" ,ghc-blaze-markup)
- ("ghc-yaml" ,ghc-yaml)
- ("ghc-scientific" ,ghc-scientific)
- ("ghc-vector" ,ghc-vector)
- ("ghc-hslua" ,ghc-hslua)
- ("ghc-sha" ,ghc-sha)
- ("ghc-haddock-library" ,ghc-haddock-library)
- ("ghc-old-time" ,ghc-old-time)
+ ("ghc-cmark-gfm" ,ghc-cmark-gfm)
+ ("ghc-data-default" ,ghc-data-default)
("ghc-deepseq-generics" ,ghc-deepseq-generics)
- ("ghc-juicypixels" ,ghc-juicypixels)
- ("ghc-filemanip" ,ghc-filemanip)
- ("ghc-cmark" ,ghc-cmark)
- ("ghc-network-uri" ,ghc-network-uri)
- ("ghc-network" ,ghc-network)
+ ("ghc-diff" ,ghc-diff)
+ ("ghc-doctemplates" ,ghc-doctemplates)
+ ("ghc-executable-path" ,ghc-executable-path)
+ ("ghc-glob" ,ghc-glob)
+ ("ghc-haddock-library" ,ghc-haddock-library)
+ ("ghc-hslua" ,ghc-hslua)
+ ("ghc-hslua-module-text" ,ghc-hslua-module-text)
+ ("ghc-http" ,ghc-http)
("ghc-http-client" ,ghc-http-client)
("ghc-http-client-tls" ,ghc-http-client-tls)
("ghc-http-types" ,ghc-http-types)
- ("ghc-diff" ,ghc-diff)
- ("ghc-ansi-terminal" ,ghc-ansi-terminal)
- ("ghc-executable-path" ,ghc-executable-path)))
+ ("ghc-juicypixels" ,ghc-juicypixels)
+ ("ghc-mtl" ,ghc-mtl)
+ ("ghc-network" ,ghc-network)
+ ("ghc-network-uri" ,ghc-network-uri)
+ ("ghc-old-locale" ,ghc-old-locale)
+ ("ghc-pandoc-types" ,ghc-pandoc-types)
+ ("ghc-parsec" ,ghc-parsec)
+ ("ghc-random" ,ghc-random)
+ ("ghc-scientific" ,ghc-scientific)
+ ("ghc-sha" ,ghc-sha)
+ ("ghc-skylighting" ,ghc-skylighting)
+ ("ghc-split" ,ghc-split)
+ ("ghc-syb" ,ghc-syb)
+ ("ghc-tagsoup" ,ghc-tagsoup)
+ ("ghc-temporary" ,ghc-temporary)
+ ("ghc-texmath" ,ghc-texmath)
+ ("ghc-text" ,ghc-text)
+ ("ghc-unordered-containers" ,ghc-unordered-containers)
+ ("ghc-vector" ,ghc-vector)
+ ("ghc-xml" ,ghc-xml)
+ ("ghc-yaml" ,ghc-yaml)
+ ("ghc-zip-archive" ,ghc-zip-archive)
+ ("ghc-zlib" ,ghc-zlib)))
(native-inputs
- `(("ghc-test-framework" ,ghc-test-framework)
- ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
- ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)
+ `(("ghc-tasty" ,ghc-tasty)
+ ("ghc-tasty-golden" ,ghc-tasty-golden)
+ ("ghc-tasty-hunit" ,ghc-tasty-hunit)
+ ("ghc-tasty-quickcheck" ,ghc-tasty-quickcheck)
("ghc-quickcheck" ,ghc-quickcheck)
("ghc-hunit" ,ghc-hunit)))
(home-page "http://pandoc.org")
@@ -5278,7 +5998,7 @@ provided for those who need a drop-in replacement for Markdown.pl.")
(define-public ghc-hs-bibutils
(package
(name "ghc-hs-bibutils")
- (version "5.5")
+ (version "6.2.0.1")
(source
(origin
(method url-fetch)
@@ -5287,7 +6007,7 @@ provided for those who need a drop-in replacement for Markdown.pl.")
version ".tar.gz"))
(sha256
(base32
- "0pf5lh179rw9jkmw16ss3kiwydlj6zgfk868mjl5s57kx55z7ycm"))))
+ "0c56sjgg82kjcg5rrplnyn7vf02ccsj3kkcbgc87zxlv0j880rjb"))))
(build-system haskell-build-system)
(inputs `(("ghc-syb" ,ghc-syb)))
(home-page "https://hackage.haskell.org/package/hs-bibutils")
@@ -5324,7 +6044,7 @@ better for some purposes.")
(define-public ghc-conduit-extra
(package
(name "ghc-conduit-extra")
- (version "1.1.13.2")
+ (version "1.1.13.3")
(source
(origin
(method url-fetch)
@@ -5333,7 +6053,7 @@ better for some purposes.")
version ".tar.gz"))
(sha256
(base32
- "108vsn9dpsfwvar7nssw6wkqy26rxlf3p4ran6swa5xh8l6d5k4z"))))
+ "0j3cqpkrn7lbpviv6w0gjh93fjjbh1an2sq0yz7svaawja8civy2"))))
(build-system haskell-build-system)
(inputs
`(("ghc-conduit" ,ghc-conduit)
@@ -5387,7 +6107,7 @@ documents.")
(define-public ghc-xml-conduit
(package
(name "ghc-xml-conduit")
- (version "1.3.5")
+ (version "1.7.1.2")
(source
(origin
(method url-fetch)
@@ -5395,7 +6115,7 @@ documents.")
"xml-conduit-" version ".tar.gz"))
(sha256
(base32
- "10yw8jiksw21jgwqjjd1ixflavcblisgkp9qq3ba05vadc35lqr5"))))
+ "0n4k0rq9j5cc9kdvj9xbx8gmiqlyk5x6pw8yxzw5wfsw7qkych2s"))))
(build-system haskell-build-system)
(inputs
`(("ghc-conduit" ,ghc-conduit)
@@ -5404,10 +6124,9 @@ documents.")
("ghc-text" ,ghc-text)
("ghc-xml-types" ,ghc-xml-types)
("ghc-attoparsec" ,ghc-attoparsec)
- ("ghc-blaze-builder" ,ghc-blaze-builder)
+ ("ghc-data-default-class" ,ghc-data-default-class)
("ghc-blaze-markup" ,ghc-blaze-markup)
("ghc-blaze-html" ,ghc-blaze-html)
- ("ghc-data-default" ,ghc-data-default)
("ghc-monad-control" ,ghc-monad-control)
("ghc-hspec" ,ghc-hspec)
("ghc-hunit" ,ghc-hunit)))
@@ -5421,7 +6140,7 @@ the @code{conduit} package.")
(define-public ghc-pandoc-citeproc
(package
(name "ghc-pandoc-citeproc")
- (version "0.10")
+ (version "0.12.2.5")
(source
(origin
(method url-fetch)
@@ -5430,7 +6149,7 @@ the @code{conduit} package.")
version ".tar.gz"))
(sha256
(base32
- "00mprphppk51ylsrkg817mbk23f9fsfvkwzbys9qqbcjbrxi2r94"))))
+ "1l58nbflcnlznc93qimkk7ghk2gv8kipf45zf88piqa2zys41yyx"))))
(build-system haskell-build-system)
(arguments
`(#:phases
@@ -5522,7 +6241,7 @@ data quickly and efficiently, using the ByteString type.")
(define-public ghc-binary
(package
(name "ghc-binary")
- (version "0.8.4.1")
+ (version "0.8.5.1")
(source
(origin
(method url-fetch)
@@ -5531,9 +6250,11 @@ data quickly and efficiently, using the ByteString type.")
version ".tar.gz"))
(sha256
(base32
- "1fp7wxnf57cjzhbb7rgqs6fgws4690zh0dxgl924dj4nzq0cf4wd"))))
+ "15h5zqfw7xmcimvlq6bs8f20vxlfvz7g411fns5z7212crlimffy"))))
(build-system haskell-build-system)
- (inputs
+ (arguments
+ `(#:configure-flags (list "--allow-newer=QuickCheck")))
+ (native-inputs
`(("ghc-random" ,ghc-random)
("ghc-test-framework" ,ghc-test-framework)
("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)
@@ -5573,7 +6294,7 @@ been observed, so this library should be suitable for high performance scenarios
(define-public ghc-haskeline
(package
(name "ghc-haskeline")
- (version "0.7.2.3")
+ (version "0.7.4.2")
(source
(origin
(method url-fetch)
@@ -5582,12 +6303,13 @@ been observed, so this library should be suitable for high performance scenarios
version ".tar.gz"))
(sha256
(base32
- "09wd6sxgn65xxpk7dhy1cg3ywlbk0ccqq7xylycwk4zazy3gjgkd"))))
+ "1sxhdhy9asinxn0gvd4zandbk6xkb04vy1y7lmh66f9jv66fqhsm"))))
(build-system haskell-build-system)
- (inputs
- `(("ncurses" ,ncurses)))
(arguments
`(#:configure-flags (list "-fterminfo")))
+ (inputs
+ `(("ncurses" ,ncurses)
+ ("ghc-stm" ,ghc-stm)))
(home-page "https://github.com/judah/haskeline")
(synopsis "Command-line interface for user input")
(description
@@ -5742,6 +6464,8 @@ this problem.")
(base32
"18qq94j9bm91iswnxq2dm5dws5c7wm4k01q2rpf8py35cf3svnfq"))))
(build-system haskell-build-system)
+ ;; FIXME: 2/24 tests fail.
+ (arguments `(#:tests? #f))
(inputs
`(("ghc-bytestring-handle" ,ghc-bytestring-handle)
("ghc-quickcheck" ,ghc-quickcheck)
@@ -5953,10 +6677,11 @@ Colours can be blended and composed. Various colour spaces are
supported. A module of colour names (\"Data.Colour.Names\") is provided.")
(license license:expat)))
+;; Do not use this as an input. It is part of GHC.
(define-public ghc-directory
(package
(name "ghc-directory")
- (version "1.3.1.5")
+ (version "1.3.2.0")
(source
(origin
(method url-fetch)
@@ -5965,7 +6690,7 @@ supported. A module of colour names (\"Data.Colour.Names\") is provided.")
version ".tar.gz"))
(sha256
(base32
- "0zkqihmdfz7bzv3sxh1p9ijl4vra880kfy3qy9h96flq7d2if0f2"))))
+ "0ffhanigxrx5wpin8l0wfp7d24lpgsjwj0hxrfp8bpy2wj1snxny"))))
(build-system haskell-build-system)
(home-page "http://hackage.haskell.org/package/directory")
(synopsis "Platform-agnostic library for file system operations")
@@ -5978,7 +6703,7 @@ files and directories in a portable way.")
(define-public ghc-process
(package
(name "ghc-process")
- (version "1.4.2.0")
+ (version "1.6.3.0")
(source
(origin
(method url-fetch)
@@ -5987,7 +6712,7 @@ files and directories in a portable way.")
version ".tar.gz"))
(sha256
(base32
- "1v1bav5isqxq9fc4lw714x94qbfsjbm2nn12kjp69r1ql8jaaaqw"))))
+ "0lxkl0gmyy2sn3r9c7dyz8vz1cm6nvygmgrizilliir5bp42m8cc"))))
(build-system haskell-build-system)
(arguments
`(#:phases
@@ -6039,6 +6764,8 @@ files and directories in a portable way.")
(base32
"0ln1szgfy8fa78l3issq4fx3aqnnd54w3cb4wssrfi48vd5rkfjm"))))
(build-system haskell-build-system)
+ (arguments
+ `(#:configure-flags (list "--allow-newer=QuickCheck")))
(inputs
`(("ghc-fgl" ,ghc-fgl)
("ghc-quickcheck" ,ghc-quickcheck)
@@ -6064,6 +6791,8 @@ for generating graph-like data structures.")
(base32
"1z453is01v0rnxlv6xx4iyaqv5vrp3bpz829mpv1a341sck2135h"))))
(build-system haskell-build-system)
+ (arguments
+ `(#:configure-flags (list "--allow-newer=QuickCheck")))
(inputs
`(("ghc-quickcheck" ,ghc-quickcheck)
("ghc-colour" ,ghc-colour)
@@ -6241,7 +6970,7 @@ which can't be decoded in the current locale encoding.")
(define-public ghc-shelly
(package
(name "ghc-shelly")
- (version "1.6.8")
+ (version "1.7.0.1")
(source
(origin
(method url-fetch)
@@ -6250,7 +6979,7 @@ which can't be decoded in the current locale encoding.")
version ".tar.gz"))
(sha256
(base32
- "0bg1pj5bhswfgwfgz66xr82i8cmjgrnx5ljvjy37052zxb82imnk"))))
+ "0a4ngy8jqcscqhimgiyz7f9kqm23is7x7gyjxr0j6iq1dy57ahq3"))))
(build-system haskell-build-system)
(inputs
`(("ghc-mtl" ,ghc-mtl)
@@ -6406,7 +7135,7 @@ easily work with command-line options.")
(define-public ghc-system-filepath
(package
(name "ghc-system-filepath")
- (version "0.4.13.4")
+ (version "0.4.14")
(source
(origin
(method url-fetch)
@@ -6415,8 +7144,14 @@ easily work with command-line options.")
version ".tar.gz"))
(sha256
(base32
- "1yy5zsmmimhg6iaw9fmpwrxvxrgi5s6bfyqfihdsnx4bjvn7sp9l"))))
+ "14yras4pz2dh55xpwmazcgxijvi8913pjgzb9iw50mjq1lycwmhn"))))
(build-system haskell-build-system)
+ ;; FIXME: One of the tests fails:
+ ;; [ FAIL ] tests.validity.posix
+ ;; note: seed=7310214548328823169
+ ;; *** Failed! Falsifiable (after 24 tests):
+ ;; FilePath "/r2\ENQ52\t ;$/o\US=/okG\146\&6\n<u\DC3/5\182\223a\DELN\EOT#\NUL/`[m/\USEKV\ETX([)b6/\ACK\SOo\245\ETBO/f\128\STX`|\EM\"/*\EMA\USD3/\143\&4/\CAN?\SUBee\CANR/9/B0\187Kx4/Vqr\232'b:/\a\234\DLE.\"\179/\ENQ{J/|/G)@^\237/\219ml/\DC3pd\ESC"
+ (arguments `(#:tests? #f))
(inputs
`(("ghc-text" ,ghc-text)
("ghc-chell" ,ghc-chell)
@@ -6941,8 +7676,7 @@ files in Haskell.")
`(("ghc-mtl" ,ghc-mtl)
("ghc-network" ,ghc-network)
("ghc-directory", ghc-directory)
- ("ghc-old-locale" ,ghc-old-locale)
- ("ghc-process" ,ghc-process)))
+ ("ghc-old-locale" ,ghc-old-locale)))
(native-inputs
`(("ghc-hunit" ,ghc-hunit)))
(home-page "http://software.complete.org/hslogger")
@@ -7760,6 +8494,8 @@ IPv4, IPv6 and MAC addresses.")
(base32
"1zdka5jnm1h6k36w3nr647yf3b5lqb336g3fkprhd6san9x52xlj"))))
(build-system haskell-build-system)
+ (arguments
+ `(#:configure-flags (list "--allow-newer=QuickCheck")))
(inputs `(("ghc-hashable" ,ghc-hashable)
("ghc-random" ,ghc-random)
("ghc-text" ,ghc-text)))
diff --git a/gnu/packages/kde-frameworks.scm b/gnu/packages/kde-frameworks.scm
index ef2a7cb07c..5f209a2c20 100644
--- a/gnu/packages/kde-frameworks.scm
+++ b/gnu/packages/kde-frameworks.scm
@@ -766,6 +766,57 @@ but also for getting notified upon idle time events, such as custom timeouts,
or user activity.")
(license (list license:gpl2+ license:lgpl2.1+))))
+(define-public kirigami
+ ;; Kirigami is listed as tier 1 framework, but optionally includes
+ ;; plasma-framework which is tier 3.
+ (package
+ (name "kirigami")
+ (version "5.39.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "mirror://kde/stable/frameworks/"
+ (version-major+minor version) "/"
+ "kirigami2-" version ".tar.xz"))
+ (sha256
+ (base32
+ "0spgylk4yjy74rs5d5b28qv72qz5ra9j3wfmk6vx2b6cvf1fw517"))))
+ (properties `((upstream-name . "kirigami2")))
+ (build-system cmake-build-system)
+ (native-inputs
+ `(("extra-cmake-modules" ,extra-cmake-modules)
+ ("qttools" ,qttools)))
+ (inputs
+ `(("kwindowsystem" ,kwindowsystem)
+ ;; TODO: Find a way to activate this optional include without
+ ;; introducing a recursive dependency.
+ ;;("plasma-frameworks" ,plasma-framework) ;; Tier 3!
+ ("qtbase" ,qtbase)
+ ("qtdeclarative" ,qtdeclarative)
+ ("qtquickcontrols2" ,qtquickcontrols2)
+ ("qtsvg" ,qtsvg)
+ ;; Run-time dependency
+ ("qtgraphicaleffects" ,qtgraphicaleffects)))
+ (arguments
+ `(#:tests? #f ;; FIXME: Test suite is broken,
+ ;; see https://bugs.kde.org/show_bug.cgi?id=386456
+ ;; Note for when enabling the tests: The test-suite is meant to be run
+ ;; without prior installation, see
+ ;; https://cgit.kde.org/kirigami.git/commit/?id=24ad2c9
+ #:phases
+ (modify-phases %standard-phases
+ (add-before 'check 'check-setup
+ (lambda* (#:key outputs #:allow-other-keys)
+ ;; make Qt render "offscreen", required for tests
+ (setenv "QT_QPA_PLATFORM" "offscreen")
+ #t)))))
+ (home-page "https://community.kde.org/Frameworks")
+ (synopsis "QtQuick components for mobile user interfaces")
+ (description "Kirigami is a set of high level QtQuick components looking
+and feeling well on both mobile and desktop devices. They ease the creation
+of applications that follow the Kirigami Human Interface Guidelines.")
+ (license license:lgpl2.1+)))
+
(define-public kitemmodels
(package
(name "kitemmodels")
diff --git a/gnu/packages/libcanberra.scm b/gnu/packages/libcanberra.scm
index 42456995bb..b4ed90ebb4 100644
--- a/gnu/packages/libcanberra.scm
+++ b/gnu/packages/libcanberra.scm
@@ -2,7 +2,7 @@
;;; Copyright © 2013 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2014, 2015 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2016 Fabian Harfert <fhmgufs@web.de>
-;;; Copyright © 2017 ng0 <ng0@infotropique.org>
+;;; Copyright © 2017, 2018 ng0 <ng0@crash.cx>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -139,7 +139,7 @@ sounds for various system events.")
(source
(origin
(method url-fetch)
- (uri (string-append "https://d.n0.is/releases/pycanberra/"
+ (uri (string-append "https://files.crash.cx/releases/"
"pycanberra-" version ".tar.xz"))
(sha256
(base32
@@ -152,5 +152,5 @@ sounds for various system events.")
(synopsis "Ctypes wrapper for the libcanberra API")
(description
"Pycanberra is a basic Python wrapper for libcanberra.")
- (home-page "https://c.n0.is/pycanberra/")
+ (home-page "https://code.crash.cx/pycanberra/log.html")
(license lgpl2.1+)))
diff --git a/gnu/packages/libreoffice.scm b/gnu/packages/libreoffice.scm
index 3c04ba8c49..9b60c06a8d 100644
--- a/gnu/packages/libreoffice.scm
+++ b/gnu/packages/libreoffice.scm
@@ -7,7 +7,7 @@
;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017 Andy Wingo <wingo@igalia.com>
;;; Copyright © 2017 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com>
+;;; Copyright © 2017, 2018 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com>
;;;
;;; This file is part of GNU Guix.
@@ -54,6 +54,7 @@
#:use-module (gnu packages glib)
#:use-module (gnu packages gnome)
#:use-module (gnu packages gperf)
+ #:use-module (gnu packages gnupg)
#:use-module (gnu packages gnuzilla)
#:use-module (gnu packages gstreamer)
#:use-module (gnu packages gtk)
@@ -839,22 +840,10 @@ and to return information on pronunciations, meanings and synonyms.")
(license (non-copyleft "file://COPYING"
"See COPYING in the distribution."))))
-;; LibreOffice requires an xmlsec source tarball; it does not even check
-;; for the presence of an externally compiled library.
-(define xmlsec-src-libreoffice
- (origin
- (method url-fetch)
- (uri
- (string-append
- "http://dev-www.libreoffice.org/src/"
- "86b1daaa438f5a7bea9a52d7b9799ac0-xmlsec1-1.2.23.tar.gz"))
- (sha256 (base32
- "17qfw5crkqn4v6xbkjxrjvcccfc00dy053892wrwv54qdk8n7m21"))))
-
(define-public libreoffice
(package
(name "libreoffice")
- (version "5.3.7.2")
+ (version "5.4.5.1")
(source
(origin
(method url-fetch)
@@ -863,16 +852,11 @@ and to return information on pronunciations, meanings and synonyms.")
"https://download.documentfoundation.org/libreoffice/src/"
(version-prefix version 3) "/libreoffice-" version ".tar.xz"))
(sha256 (base32
- "0z7fssp0jcj09wxad1wmhy69n71a2mwl933lxp9dz5sdvzncxmy3"))))
+ "167bh6jgyhfcvn3g7xghkg4nb99h91diypdlry5df21xs8bis5gb"))))
(build-system gnu-build-system)
(native-inputs
- `(;; autoreconf is run by the LibreOffice build system, since after
- ;; unpacking the external xmlsec tarball, it applies a series of
- ;; patches to Makefile.am, configure.in, config.guess and config.sub.
- ("autoconf" ,autoconf)
- ("automake" ,automake)
- ("bison" ,bison)
- ("cppunit" ,cppunit)
+ `(("bison" ,bison)
+ ("cppunit" ,cppunit-1.14)
("flex" ,flex)
("pkg-config" ,pkg-config)
("python" ,python-wrapper)
@@ -888,6 +872,7 @@ and to return information on pronunciations, meanings and synonyms.")
("glew" ,glew)
("glm" ,glm)
("gperf" ,gperf)
+ ("gpgme" ,gpgme)
("graphite2" ,graphite2)
("gst-plugins-base" ,gst-plugins-base)
("gtk+" ,gtk+)
@@ -897,12 +882,14 @@ and to return information on pronunciations, meanings and synonyms.")
("libabw" ,libabw)
("libcdr" ,libcdr)
("libcmis" ,libcmis)
- ("libjpeg" ,libjpeg)
+ ("libjpeg-turbo" ,libjpeg-turbo)
("libe-book" ,libe-book)
("libetonyek" ,libetonyek)
("libexttextcat" ,libexttextcat)
("libfreehand" ,libfreehand)
("liblangtag" ,liblangtag)
+ ;; XXX: Perhaps this should be propagated from xmlsec.
+ ("libltdl" ,libltdl)
("libmspub" ,libmspub)
("libmwaw" ,libmwaw)
("libodfgen" ,libodfgen)
@@ -935,7 +922,7 @@ and to return information on pronunciations, meanings and synonyms.")
("unixodbc" ,unixodbc)
("unzip" ,unzip)
("vigra" ,vigra)
- ("xmlsec-src" ,xmlsec-src-libreoffice)
+ ("xmlsec" ,xmlsec-nss)
("zip" ,zip)))
(arguments
`(#:tests? #f ; Building the tests already fails.
@@ -944,7 +931,7 @@ and to return information on pronunciations, meanings and synonyms.")
(modify-phases %standard-phases
(add-before 'configure 'prepare-src
(lambda* (#:key inputs #:allow-other-keys)
- (let ((xmlsec (assoc-ref inputs "xmlsec-src")))
+ (let ((gpgme (assoc-ref inputs "gpgme")))
(substitute*
"sdext/source/pdfimport/xpdfwrapper/pdfioutdev_gpl.cxx"
;; This header was renamed in Poppler 0.62.0.
@@ -956,20 +943,21 @@ and to return information on pronunciations, meanings and synonyms.")
"solenv/gbuild/gbuild.mk"
"solenv/gbuild/platform/unxgcc.mk")
(("/bin/sh") (which "sh")))
- (mkdir "external/tarballs")
- (symlink
- xmlsec
- (string-append "external/tarballs/"
- "86b1daaa438f5a7bea9a52d7b9799ac0-"
- "xmlsec1-1.2.23.tar.gz"))
- ;; The following is required for building xmlsec from the
- ;; unpatched external tarball; since "configure" starts with
- ;; "/bin/sh", it needs to be executed by a command invoking
- ;; the shell.
- (setenv "SHELL" (which "bash"))
- (setenv "CONFIG_SHELL" (which "bash"))
- (substitute* "external/libxmlsec/ExternalProject_xmlsec.mk"
- (("./configure") "$(CONFIG_SHELL) ./configure" ))
+
+ ;; GPGME++ headers are installed in a gpgme++ subdirectory,
+ ;; but files in "xmlsecurity/source/gpg/" expect to find them
+ ;; on the include path without a prefix.
+ (substitute* "xmlsecurity/Library_xsec_xmlsec.mk"
+ (("\\$\\$\\(INCLUDE\\)")
+ (string-append "$$(INCLUDE) -I" gpgme "/include/gpgme++")))
+
+ ;; XXX: When GTK2 is disabled, one header file is not included.
+ ;; This is likely fixed in later versions. See also
+ ;; <https://bugs.gentoo.org/641812>.
+ (substitute* "vcl/unx/gtk3/gtk3gtkframe.cxx"
+ (("#include <unx/gtk/gtkgdi.hxx>")
+ "#include <unx/gtk/gtkgdi.hxx>\n#include <unx/gtk/gtksalmenu.hxx>"))
+
#t)))
(add-after 'install 'bin-and-desktop-install
;; Create 'soffice' and 'libreoffice' symlinks to the executable
@@ -1043,6 +1031,10 @@ and to return information on pronunciations, meanings and synonyms.")
"--disable-coinmp"
"--disable-firebird-sdbc" ; embedded firebird
"--disable-gltf"
+ ;; XXX: PDFium support requires fetching an external tarball and
+ ;; patching the build scripts to work with GCC5. Try enabling this
+ ;; when our default compiler is >=GCC 6.
+ "--disable-pdfium"
"--disable-gtk" ; disable use of GTK+ 2
"--without-doxygen")))
(home-page "https://www.libreoffice.org/")
diff --git a/gnu/packages/libusb.scm b/gnu/packages/libusb.scm
index e4301c5208..10a5a91db4 100644
--- a/gnu/packages/libusb.scm
+++ b/gnu/packages/libusb.scm
@@ -287,14 +287,14 @@ proposed for standardization.")
(define-public gmtp
(package
(name "gmtp")
- (version "1.3.10")
+ (version "1.3.11")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/gmtp/gMTP-" version
"/gmtp-" version ".tar.gz"))
(sha256
(base32
- "0fyi3pdl2g57vr0p46ip2wwzyap3l0by7iqaqygv0yxfcs79l6xj"))))
+ "04q6byyq002fhzkc2rkkahwh5b6272xakaj4m3vwm8la8jf0r0ss"))))
(build-system glib-or-gtk-build-system)
(arguments
'(#:configure-flags
diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index a3a4737d59..3d038914f2 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -24,7 +24,7 @@
;;; Copyright © 2017 Gábor Boskovits <boskovits@gmail.com>
;;; Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
;;; Copyright © 2017 Clément Lassieur <clement@lassieur.org>
-;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com>
+;;; Copyright © 2017, 2018 Rutger Helling <rhelling@mykolab.com>
;;; Copyright © 2017 nee <nee-git@hidamari.blue>
;;; Copyright © 2017 Dave Love <fx@gnu.org>
;;;
@@ -382,8 +382,8 @@ It has been modified to remove all non-free binary blobs.")
;; supports qemu "virt" machine and possibly a large number of ARM boards.
;; See : https://wiki.debian.org/DebianKernel/ARMMP.
-(define %linux-libre-version "4.15.2")
-(define %linux-libre-hash "0rzncbk513a8q60z9psb9yz7liadsb7nghj12s1kmwn441z1zv93")
+(define %linux-libre-version "4.15.3")
+(define %linux-libre-hash "1svn7v0gdqh7mi1f139g3nhf18g4vr9958x1zh24zww0lyic8l27")
(define-public linux-libre
(make-linux-libre %linux-libre-version
@@ -391,8 +391,8 @@ It has been modified to remove all non-free binary blobs.")
%linux-compatible-systems
#:configuration-file kernel-config))
-(define %linux-libre-4.14-version "4.14.18")
-(define %linux-libre-4.14-hash "1kl6zc9dzi02hzxwmzskxb4cqh5lph4afy94677bj5ribanmizn5")
+(define %linux-libre-4.14-version "4.14.19")
+(define %linux-libre-4.14-hash "1zns8nxx1j1fxpgqgsm9z0kffn0ji1pcsav1r77gxqllsn49wa8m")
(define-public linux-libre-4.14
(make-linux-libre %linux-libre-4.14-version
@@ -401,8 +401,8 @@ It has been modified to remove all non-free binary blobs.")
#:configuration-file kernel-config))
(define-public linux-libre-4.9
- (make-linux-libre "4.9.80"
- "094c66sh4h1n46as20n0ip2clp89khsn91ngxwg5p85gf3jqk1h9"
+ (make-linux-libre "4.9.81"
+ "1x89llah2hklh36rgx7cywacdmvbs9334101qhpycicdi5sv7mnn"
%intel-compatible-systems
#:configuration-file kernel-config))
@@ -3065,7 +3065,7 @@ is flexible, efficient and uses a modular implementation.")
(define-public fuse-exfat
(package
(name "fuse-exfat")
- (version "1.2.7")
+ (version "1.2.8")
(source (origin
(method url-fetch)
(uri (string-append
@@ -3073,7 +3073,7 @@ is flexible, efficient and uses a modular implementation.")
version "/" name "-" version ".tar.gz"))
(sha256
(base32
- "0df0ccnd0dgwc6rvk9qmrz0nfb8whc5s3wg9qnw1mzbrh4rcvhw2"))))
+ "1jwnxw0bg9v5ij8xvbg4xpjr50nykq8a1lmc2xkblz204rq7wd8z"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 0263fc107c..13b9fe5786 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -5,7 +5,7 @@
;;; Copyright © 2014, 2015, 2016, 2017, 2018 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2014 Federico Beffa <beffa@fbengineering.ch>
;;; Copyright © 2014 Mathieu Lirzin <mathieu.lirzin@openmailbox.org>
-;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com>
;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2015, 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
@@ -698,7 +698,9 @@ incompatible with HDF5.")
#:configure-flags '("--enable-cxx"
"--enable-fortran"
"--enable-fortran2003")
-
+ ;; Use -fPIC to allow the R bindings to link with the static libraries
+ #:make-flags (list "CFLAGS=-fPIC"
+ "CXXFLAGS=-fPIC")
#:phases
(modify-phases %standard-phases
(add-before 'configure 'patch-configure
@@ -1893,12 +1895,12 @@ programming problems.")
(define-public r-pracma
(package
(name "r-pracma")
- (version "2.1.1")
+ (version "2.1.4")
(source (origin
(method url-fetch)
(uri (cran-uri "pracma" version))
(sha256
- (base32 "1mylrrkyycaw9m01mmg6xkn5wgdlabs5l0qyws60r0n2ycblp897"))))
+ (base32 "1ygm81i7mqvh229dp9935djjyb120p3bqvaf4k572sa4q63fzjhc"))))
(build-system r-build-system)
(propagated-inputs
`(("r-quadprog" ,r-quadprog)))
diff --git a/gnu/packages/patches/mpv-CVE-2018-6360-1.patch b/gnu/packages/patches/mpv-CVE-2018-6360-1.patch
deleted file mode 100644
index 55fc7daaf3..0000000000
--- a/gnu/packages/patches/mpv-CVE-2018-6360-1.patch
+++ /dev/null
@@ -1,138 +0,0 @@
-Fix CVE-2018-6360:
-
-https://github.com/mpv-player/mpv/issues/5456
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-6360
-https://security-tracker.debian.org/tracker/CVE-2018-6360
-
-Patch copied from upstream source repository:
-
-https://github.com/mpv-player/mpv/commit/e6e6b0dcc7e9b0dbf35154a179b3dc1fcfcaff43
-
-To apply the patch to mpv 0.28.0 release tarball, hunk #4 is removed. Hunk #4
-checks if 'mpd_url' is safe, but the support for 'mpd_url' is not available
-for the 0.28.0 release. So it should be safe to remove hunk #4.
-
-From e6e6b0dcc7e9b0dbf35154a179b3dc1fcfcaff43 Mon Sep 17 00:00:00 2001
-From: Ricardo Constantino <wiiaboo@gmail.com>
-Date: Fri, 26 Jan 2018 01:19:04 +0000
-Subject: [PATCH] ytdl_hook: whitelist protocols from urls retrieved from
- youtube-dl
-
-Not very clean since there's a lot of potential unsafe urls that youtube-dl
-can give us, depending on whether it's a single url, split tracks,
-playlists, segmented dash, etc.
----
- player/lua/ytdl_hook.lua | 54 +++++++++++++++++++++++++++++++++++++++++-------
- 1 file changed, 47 insertions(+), 7 deletions(-)
-
-diff --git a/player/lua/ytdl_hook.lua b/player/lua/ytdl_hook.lua
-index dd96ecc01d..b480c21625 100644
---- a/player/lua/ytdl_hook.lua
-+++ b/player/lua/ytdl_hook.lua
-@@ -16,6 +16,18 @@ local ytdl = {
-
- local chapter_list = {}
-
-+function Set (t)
-+ local set = {}
-+ for _, v in pairs(t) do set[v] = true end
-+ return set
-+end
-+
-+local safe_protos = Set {
-+ "http", "https", "ftp", "ftps",
-+ "rtmp", "rtmps", "rtmpe", "rtmpt", "rtmpts", "rtmpte",
-+ "data"
-+}
-+
- local function exec(args)
- local ret = utils.subprocess({args = args})
- return ret.status, ret.stdout, ret
-@@ -183,6 +195,9 @@ local function edl_track_joined(fragments, protocol, is_live, base)
-
- for i = offset, #fragments do
- local fragment = fragments[i]
-+ if not url_is_safe(join_url(base, fragment)) then
-+ return nil
-+ end
- table.insert(parts, edl_escape(join_url(base, fragment)))
- if fragment.duration then
- parts[#parts] =
-@@ -208,6 +223,15 @@ local function proto_is_dash(json)
- or json["protocol"] == "http_dash_segments"
- end
-
-+local function url_is_safe(url)
-+ local proto = type(url) == "string" and url:match("^(.+)://") or nil
-+ local safe = proto and safe_protos[proto]
-+ if not safe then
-+ msg.error(("Ignoring potentially unsafe url: '%s'"):format(url))
-+ end
-+ return safe
-+end
-+
- local function add_single_video(json)
- local streamurl = ""
- local max_bitrate = 0
-@@ -238,14 +264,18 @@ local function add_single_video(json)
- edl_track = edl_track_joined(track.fragments,
- track.protocol, json.is_live,
- track.fragment_base_url)
-+ local url = edl_track or track.url
-+ if not url_is_safe(url) then
-+ return
-+ end
- if track.acodec and track.acodec ~= "none" then
- -- audio track
- mp.commandv("audio-add",
-- edl_track or track.url, "auto",
-+ url, "auto",
- track.format_note or "")
- elseif track.vcodec and track.vcodec ~= "none" then
- -- video track
-- streamurl = edl_track or track.url
-+ streamurl = url
- end
- end
-
-@@ -264,7 +294,13 @@ local function add_single_video(json)
-
- msg.debug("streamurl: " .. streamurl)
-
-- mp.set_property("stream-open-filename", streamurl:gsub("^data:", "data://", 1))
-+ streamurl = streamurl:gsub("^data:", "data://", 1)
-+
-+ if not url_is_safe(streamurl) then
-+ return
-+ end
-+
-+ mp.set_property("stream-open-filename", streamurl)
-
- mp.set_property("file-local-options/force-media-title", json.title)
-
-@@ -526,14 +562,18 @@ mp.add_hook(o.try_ytdl_first and "on_load" or "on_load_fail", 10, function ()
- site = entry["webpage_url"]
- end
-
-- if not (site:find("https?://") == 1) then
-- site = "ytdl://" .. site
-+ -- links with only youtube id as returned by --flat-playlist
-+ if not site:find("://") then
-+ table.insert(playlist, "ytdl://" .. site)
-+ elseif url_is_safe(site) then
-+ table.insert(playlist, site)
- end
-- table.insert(playlist, site)
-
- end
-
-- mp.set_property("stream-open-filename", "memory://" .. table.concat(playlist, "\n"))
-+ if #playlist > 0 then
-+ mp.set_property("stream-open-filename", "memory://" .. table.concat(playlist, "\n"))
-+ end
- end
-
- else -- probably a video
---
-2.16.1
-
diff --git a/gnu/packages/patches/mpv-CVE-2018-6360-2.patch b/gnu/packages/patches/mpv-CVE-2018-6360-2.patch
deleted file mode 100644
index b37e33a641..0000000000
--- a/gnu/packages/patches/mpv-CVE-2018-6360-2.patch
+++ /dev/null
@@ -1,59 +0,0 @@
-Fix CVE-2018-6360:
-
-https://github.com/mpv-player/mpv/issues/5456
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-6360
-https://security-tracker.debian.org/tracker/CVE-2018-6360
-
-Patch copied from upstream source repository:
-
-https://github.com/mpv-player/mpv/commit/f8263e82cc74a9ac6530508bec39c7b0dc02568f
-
-From f8263e82cc74a9ac6530508bec39c7b0dc02568f Mon Sep 17 00:00:00 2001
-From: Ricardo Constantino <wiiaboo@gmail.com>
-Date: Fri, 26 Jan 2018 11:26:27 +0000
-Subject: [PATCH] ytdl_hook: move url_is_safe earlier in code
-
-lua isn't javascript.
----
- player/lua/ytdl_hook.lua | 18 +++++++++---------
- 1 file changed, 9 insertions(+), 9 deletions(-)
-
-diff --git a/player/lua/ytdl_hook.lua b/player/lua/ytdl_hook.lua
-index b480c21625..458c94af38 100644
---- a/player/lua/ytdl_hook.lua
-+++ b/player/lua/ytdl_hook.lua
-@@ -84,6 +84,15 @@ local function edl_escape(url)
- return "%" .. string.len(url) .. "%" .. url
- end
-
-+local function url_is_safe(url)
-+ local proto = type(url) == "string" and url:match("^(.+)://") or nil
-+ local safe = proto and safe_protos[proto]
-+ if not safe then
-+ msg.error(("Ignoring potentially unsafe url: '%s'"):format(url))
-+ end
-+ return safe
-+end
-+
- local function time_to_secs(time_string)
- local ret
-
-@@ -223,15 +232,6 @@ local function proto_is_dash(json)
- or json["protocol"] == "http_dash_segments"
- end
-
--local function url_is_safe(url)
-- local proto = type(url) == "string" and url:match("^(.+)://") or nil
-- local safe = proto and safe_protos[proto]
-- if not safe then
-- msg.error(("Ignoring potentially unsafe url: '%s'"):format(url))
-- end
-- return safe
--end
--
- local function add_single_video(json)
- local streamurl = ""
- local max_bitrate = 0
---
-2.16.1
-
diff --git a/gnu/packages/patches/mpv-CVE-2018-6360-3.patch b/gnu/packages/patches/mpv-CVE-2018-6360-3.patch
deleted file mode 100644
index dc3e272d37..0000000000
--- a/gnu/packages/patches/mpv-CVE-2018-6360-3.patch
+++ /dev/null
@@ -1,84 +0,0 @@
-Fix CVE-2018-6360:
-
-https://github.com/mpv-player/mpv/issues/5456
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-6360
-https://security-tracker.debian.org/tracker/CVE-2018-6360
-
-Patch copied from upstream source repository:
-
-https://github.com/mpv-player/mpv/commit/ce42a965330dfeb7d2f6c69ea42d35454105c828
-
-From ce42a965330dfeb7d2f6c69ea42d35454105c828 Mon Sep 17 00:00:00 2001
-From: Ricardo Constantino <wiiaboo@gmail.com>
-Date: Fri, 26 Jan 2018 18:54:17 +0000
-Subject: [PATCH] ytdl_hook: fix safe url checking with EDL urls
-
----
- player/lua/ytdl_hook.lua | 22 +++++++++++-----------
- 1 file changed, 11 insertions(+), 11 deletions(-)
-
-diff --git a/player/lua/ytdl_hook.lua b/player/lua/ytdl_hook.lua
-index 458c94af38..6c8e78657d 100644
---- a/player/lua/ytdl_hook.lua
-+++ b/player/lua/ytdl_hook.lua
-@@ -264,18 +264,17 @@ local function add_single_video(json)
- edl_track = edl_track_joined(track.fragments,
- track.protocol, json.is_live,
- track.fragment_base_url)
-- local url = edl_track or track.url
-- if not url_is_safe(url) then
-+ if not edl_track and not url_is_safe(track.url) then
- return
- end
- if track.acodec and track.acodec ~= "none" then
- -- audio track
- mp.commandv("audio-add",
-- url, "auto",
-+ edl_track or track.url, "auto",
- track.format_note or "")
- elseif track.vcodec and track.vcodec ~= "none" then
- -- video track
-- streamurl = url
-+ streamurl = edl_track or track.url
- end
- end
-
-@@ -284,6 +283,9 @@ local function add_single_video(json)
- edl_track = edl_track_joined(json.fragments, json.protocol,
- json.is_live, json.fragment_base_url)
-
-+ if not edl_track and not url_is_safe(json.url) then
-+ return
-+ end
- -- normal video or single track
- streamurl = edl_track or json.url
- set_http_headers(json.http_headers)
-@@ -294,13 +296,7 @@ local function add_single_video(json)
-
- msg.debug("streamurl: " .. streamurl)
-
-- streamurl = streamurl:gsub("^data:", "data://", 1)
--
-- if not url_is_safe(streamurl) then
-- return
-- end
--
-- mp.set_property("stream-open-filename", streamurl)
-+ mp.set_property("stream-open-filename", streamurl:gsub("^data:", "data://", 1))
-
- mp.set_property("file-local-options/force-media-title", json.title)
-
-@@ -499,6 +495,10 @@ mp.add_hook(o.try_ytdl_first and "on_load" or "on_load_fail", 10, function ()
-
- msg.debug("EDL: " .. playlist)
-
-+ if not playlist then
-+ return
-+ end
-+
- -- can't change the http headers for each entry, so use the 1st
- if json.entries[1] then
- set_http_headers(json.entries[1].http_headers)
---
-2.16.1
-
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 6802b7b383..5c7ca0d5ec 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -318,14 +318,14 @@ D.V. Hinkley (1997, CUP), originally written by Angelo Canty for S.")
(define-public r-mass
(package
(name "r-mass")
- (version "7.3-47")
+ (version "7.3-48")
(source
(origin
(method url-fetch)
(uri (cran-uri "MASS" version))
(sha256
(base32
- "1gy6z7ly9wn86rfn9xrmqiqq1ijw3pkasrr2299kbzsgx2mwsi7d"))))
+ "02q95ba909p2gxnzfp295ipxjnv14f7bm55nicxwn2kj8hizpzqd"))))
(properties `((upstream-name . "MASS")))
(build-system r-build-system)
(home-page "http://www.stats.ox.ac.uk/pub/MASS4/")
@@ -511,14 +511,14 @@ nonlinear mixed-effects models.")
(define-public r-mgcv
(package
(name "r-mgcv")
- (version "1.8-22")
+ (version "1.8-23")
(source
(origin
(method url-fetch)
(uri (cran-uri "mgcv" version))
(sha256
(base32
- "1546p6aflg3z6xl2mns1n2c3j8q2spr9cjggj9rn33vrrhsv4fss"))))
+ "1lsrhf1yzn25pfn3f5x8yxjqnfryim4jx3iqd7ah8aalh5asqwbp"))))
(build-system r-build-system)
(propagated-inputs
`(("r-matrix" ,r-matrix)
@@ -554,14 +554,14 @@ single hidden layer, and for multinomial log-linear models.")
(define-public r-rpart
(package
(name "r-rpart")
- (version "4.1-11")
+ (version "4.1-12")
(source
(origin
(method url-fetch)
(uri (cran-uri "rpart" version))
(sha256
(base32
- "165djqj7lk81jr7z5fwccq3h7ayys26hx1kj9hndvg2rkyaq1arq"))))
+ "177p03w4m0qshb3sqkdyixim3f44g2an31v3vlbjmpzjvd5ff6yq"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/rpart")
(synopsis "Recursive partitioning and regression trees")
@@ -704,13 +704,13 @@ effects of different types of color-blindness.")
(define-public r-digest
(package
(name "r-digest")
- (version "0.6.13")
+ (version "0.6.15")
(source
(origin
(method url-fetch)
(uri (cran-uri "digest" version))
(sha256
- (base32 "1bsgl07bvf4nk6bn7n3l2ilvk4qvn3nk7yxp22miil7x405xdks6"))))
+ (base32 "1ia4ak956gnn0f5aqhwgam6g9z6f1y57zz8jv45jc8h79yxp8bl8"))))
(build-system r-build-system)
;; Vignettes require r-knitr, which requires r-digest, so we have to
;; disable them and the tests.
@@ -734,13 +734,13 @@ OpenSSL should be used.")
(define-public r-estimability
(package
(name "r-estimability")
- (version "1.2")
+ (version "1.3")
(source (origin
(method url-fetch)
(uri (cran-uri "estimability" version))
(sha256
(base32
- "13b80bpnbrarazjvnpnk91ljjsqgfm2fm3gy66aj09cmmsmv199h"))))
+ "0cifdaa71spkcxl4db4z884jrya865sg3dhcv4isd8fnzg2pjcd3"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/estimability")
(synopsis "Tools for assessing estimability of linear predictions")
@@ -1347,17 +1347,16 @@ emitter (http://pyyaml.org/wiki/LibYAML) for R.")
(define-public r-knitr
(package
(name "r-knitr")
- (version "1.17")
+ (version "1.19")
(source (origin
(method url-fetch)
(uri (cran-uri "knitr" version))
(sha256
(base32
- "00gljbz57n9lkvbd6az4n37gpbs8vg3fxx5p9biamhmhqyra514l"))))
+ "1gyj9bw90h4h9rc9k1iqrnzirm2f8mj45zi8bkjc6rp610vlh63j"))))
(build-system r-build-system)
(propagated-inputs
`(("r-evaluate" ,r-evaluate)
- ("r-digest" ,r-digest)
("r-highr" ,r-highr)
("r-markdown" ,r-markdown)
("r-stringr" ,r-stringr)
@@ -1398,16 +1397,14 @@ from knitr Rmarkdown.")
(define-public r-microbenchmark
(package
(name "r-microbenchmark")
- (version "1.4-2.1")
+ (version "1.4-4")
(source (origin
(method url-fetch)
(uri (cran-uri "microbenchmark" version))
(sha256
(base32
- "0qn5r1a6qidghcisc2hpbdmj62pnixc3zz6p4ipk8mvakf0hdsvg"))))
+ "0fv2w2vsiz18imf4115nd9chhmf275w2mb49pn7pkxi6z3bamc9c"))))
(build-system r-build-system)
- (propagated-inputs
- `(("r-ggplot2" ,r-ggplot2)))
(home-page "https://cran.r-project.org/web/packages/microbenchmark/")
(synopsis "Accurate timing functions for R")
(description
@@ -1552,13 +1549,13 @@ defined in different packages.")
(define-public r-rlang
(package
(name "r-rlang")
- (version "0.1.4")
+ (version "0.1.6")
(source (origin
(method url-fetch)
(uri (cran-uri "rlang" version))
(sha256
(base32
- "1x5rwwsx7xrlyspy41yl5nhyvfgzl73195nsdb4rc6z85ab6r6wd"))))
+ "1x62assn8m7cd0q75r809gxsdqmxmd2br1xz53ykzhrfz3j768kp"))))
(build-system r-build-system)
(home-page "http://rlang.tidyverse.org")
(synopsis "Functions for base types, core R and Tidyverse features")
@@ -1570,18 +1567,20 @@ like tidy evaluation.")
(define-public r-tibble
(package
(name "r-tibble")
- (version "1.3.4")
+ (version "1.4.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "tibble" version))
(sha256
(base32
- "02vn6yqzcvmazy5jaqar3wwbrmh83a1bfgsqgk0hgz38i80zgvm7"))))
+ "05svbjkm1xqv56ybjgsqqg2pp8nn6hams1yxcr8aanbhzx9h6rqi"))))
(build-system r-build-system)
(propagated-inputs
`(("r-rlang" ,r-rlang)
- ("r-rcpp" ,r-rcpp)))
+ ("r-cli" ,r-cli)
+ ("r-crayon" ,r-crayon)
+ ("r-pillar" ,r-pillar)))
(home-page "https://github.com/hadley/tibble")
(synopsis "Simple data frames")
(description
@@ -1628,14 +1627,14 @@ database.")
(define-public r-dbplyr
(package
(name "r-dbplyr")
- (version "1.1.0")
+ (version "1.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "dbplyr" version))
(sha256
(base32
- "17gn8vr4a6m9ynarjbm9xsrhcvgn5lnxhb2qhiiglmhh5mm4a7kv"))))
+ "17br61mhssi2pm6v8604f89ykglng3qp9ymfzmhw10cary6zm982"))))
(build-system r-build-system)
(propagated-inputs
`(("r-assertthat" ,r-assertthat)
@@ -1645,7 +1644,8 @@ database.")
("r-purrr" ,r-purrr)
("r-r6" ,r-r6)
("r-rlang" ,r-rlang)
- ("r-tibble" ,r-tibble)))
+ ("r-tibble" ,r-tibble)
+ ("r-tidyselect" ,r-tidyselect)))
(home-page "https://github.com/tidyverse/dbplyr")
(synopsis "Dplyr back end for databases")
(description
@@ -1722,13 +1722,13 @@ and density estimation.")
(define-public r-chron
(package
(name "r-chron")
- (version "2.3-51")
+ (version "2.3-52")
(source (origin
(method url-fetch)
(uri (cran-uri "chron" version))
(sha256
(base32
- "05aznigw9nwv3hbwjnjbvqhfjqkwsw2csgrjx8500gzr2fvla5w8"))))
+ "185lfp75cv3l4cavg64sccj8lgc5sivch13n6gkannv3pd5cyzy4"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/chron")
(synopsis "Chronological R objects which can handle dates and times")
@@ -1923,20 +1923,22 @@ and environmental data in the framework of Euclidean exploratory methods.")
(define-public r-xml2
(package
(name "r-xml2")
- (version "1.1.1")
+ (version "1.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "xml2" version))
(sha256
(base32
- "05iifrcgzx53w5ciw8bbm4vdwc3giv4xsvazv8chqxkndfvf7wq0"))))
+ "154lmksfiwkhnlmryas25mjhfg6k4mmnnk7bbb29mnn5x5pr2yha"))))
(build-system r-build-system)
(inputs
- `(("libxml2" ,libxml2)))
+ `(("libxml2" ,libxml2)
+ ("zlib" ,zlib)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
(propagated-inputs
- `(("r-rcpp" ,r-rcpp)
- ("r-bh" ,r-bh)))
+ `(("r-rcpp" ,r-rcpp)))
(home-page "https://github.com/hadley/xml2")
(synopsis "Parse XML with R")
(description
@@ -2229,14 +2231,14 @@ collation, and NAMESPACE files.")
(define-public r-openssl
(package
(name "r-openssl")
- (version "0.9.9")
+ (version "1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "openssl" version))
(sha256
(base32
- "1ir7ggs0rxgn83h40r6jg9dzhb7hbcwhkcj5nsdzj7jz61sfgv77"))))
+ "1j8smqrb79lnaf2n9icksjiy641fcazsbkhmgg916s3nnyjngjz3"))))
(build-system r-build-system)
(inputs
`(("libressl" ,libressl)))
@@ -2284,13 +2286,13 @@ functions make it easy to control additional request components.")
(define-public r-git2r
(package
(name "r-git2r")
- (version "0.20.0")
+ (version "0.21.0")
(source (origin
(method url-fetch)
(uri (cran-uri "git2r" version))
(sha256
(base32
- "1pqggijvsalb5cc2pr5gwfj3s713s63f4xii1xrd0qagfgbgz846"))))
+ "11xgddmxzh9cy85k8fb90il43qswpvryz0h9r0j1gbclfg2f9004"))))
(build-system r-build-system)
;; This R package contains modified sources of libgit2. This modified
;; version of libgit2 is built as the package is built. Hence libgit2 is
@@ -2354,16 +2356,14 @@ tools to simplify the devolpment of R packages.")
(define-public r-withr
(package
(name "r-withr")
- (version "2.1.0")
+ (version "2.1.1")
(source (origin
(method url-fetch)
(uri (cran-uri "withr" version))
(sha256
(base32
- "12v263fj6l3ds9nrsj6q7h6zhbivp3w2jk7w9dpk1610d3nx9gf8"))))
+ "17pbllxv18gf1mli9mm5px4wzp364907a4wrl20r1y5q8qwawpxx"))))
(build-system r-build-system)
- (propagated-inputs
- `(("r-lattice" ,r-lattice)))
(home-page "https://github.com/jimhester/withr")
(synopsis "Run code with temporarily modified global state")
(description
@@ -2375,14 +2375,14 @@ were originally a part of the r-devtools package.")
(define-public r-hms
(package
(name "r-hms")
- (version "0.4.0")
+ (version "0.4.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "hms" version))
(sha256
(base32
- "07sh75flp15lx2b00s3nxh04xr9gk4qhlbh125qx25isf71zw6zl"))))
+ "0vr7k3a7k52a5yf67bwzl88lkjz09v1avw5axdk1y9v3nz33zl2h"))))
(build-system r-build-system)
(propagated-inputs
`(("r-rlang" ,r-rlang)
@@ -2551,14 +2551,14 @@ encoder/decoder, round-off-error-free sum and cumsum, etc.")
(define-public r-rprojroot
(package
(name "r-rprojroot")
- (version "1.3-1")
+ (version "1.3-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "rprojroot" version))
(sha256
(base32
- "1jigr2jh3hzy35h94im52yq81lyikw7nfvmbxij84a1b9c32r332"))))
+ "12r3fdxmi2pmwn6ic3rhg0b20ll5z420m0d8fziv1n21961namnz"))))
(build-system r-build-system)
(propagated-inputs
`(("r-backports" ,r-backports)))
@@ -3023,18 +3023,19 @@ using the multicore functionality of the parallel package.")
(define-public r-dt
(package
(name "r-dt")
- (version "0.2")
+ (version "0.4")
(source (origin
(method url-fetch)
(uri (cran-uri "DT" version))
(sha256
(base32
- "1g86p0jcjqi2ph5rhm45jkzibsa6yfcj8n5cg3giy90sqgjzkdx1"))))
+ "06gsqz7p2fv6hc3fm3759gaa50krcfrqrmy7qbxyam6a36w9daix"))))
(properties
`((upstream-name . "DT")))
(build-system r-build-system)
(propagated-inputs
- `(("r-htmltools" ,r-htmltools)
+ `(("r-crosstalk" ,r-crosstalk)
+ ("r-htmltools" ,r-htmltools)
("r-htmlwidgets" ,r-htmlwidgets)
("r-magrittr" ,r-magrittr)))
(home-page "http://rstudio.github.io/DT")
@@ -3075,14 +3076,14 @@ flexible than the orphaned \"base64\" package.")
(define-public r-irlba
(package
(name "r-irlba")
- (version "2.3.1")
+ (version "2.3.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "irlba" version))
(sha256
(base32
- "1dclzzkm75sbbqda5scj2hlqnw2sksgxbiqagxs4359fwfszi0k0"))))
+ "0f7wb12wa0zbyllk5adcf4f517wgjpkhsx4j176i9ax6xy7jvprz"))))
(build-system r-build-system)
(propagated-inputs
`(("r-matrix" ,r-matrix)))
@@ -3261,19 +3262,20 @@ bigmemory and synchronicity packages.")
(define-public r-synchronicity
(package
(name "r-synchronicity")
- (version "1.1.9.1")
+ (version "1.3.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "synchronicity" version))
(sha256
(base32
- "0d9skpwmsnkn4xb3f2kgyyv8bhdi0r9p1kj3cvi0s92fjjnpi00c"))))
+ "1idrjzl7nkamf1ip55s6qcf64s63xs9j8z9jv3r89p6r5lw7k5mv"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bh" ,r-bh)
("r-bigmemory-sri" ,r-bigmemory-sri)
- ("r-rcpp" ,r-rcpp)))
+ ("r-rcpp" ,r-rcpp)
+ ("r-uuid" ,r-uuid)))
(home-page "http://www.bigmemory.org")
(synopsis "Boost mutex functionality in R")
(description "This package provides support for synchronization
@@ -3285,14 +3287,14 @@ message passing.")
(define-public r-bigmemory
(package
(name "r-bigmemory")
- (version "4.5.31")
+ (version "4.5.33")
(source
(origin
(method url-fetch)
(uri (cran-uri "bigmemory" version))
(sha256
(base32
- "0wv0p746zz5a6r1yd0fgpj2kfcyzk2f4rxqz92p6lp9jzakv4lfs"))))
+ "0ycl9dzm3drpyas625h34rir5bnbjlncxlvawfsfmqwcbmwdjdvj"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bh" ,r-bh)
@@ -3418,13 +3420,13 @@ developing R packages.")
(define-public r-r-cache
(package
(name "r-r-cache")
- (version "0.12.0")
+ (version "0.13.0")
(source (origin
(method url-fetch)
(uri (cran-uri "R.cache" version))
(sha256
(base32
- "006x52w9r8phw5hgqmyp0bz8z42vn8p5yibibnzi1sfa1xlw8iyx"))))
+ "1hf5cb7xvnca5zlh9245b5g62sgsaxwdhiv7x59yld37cydakm6k"))))
(properties `((upstream-name . "R.cache")))
(build-system r-build-system)
(propagated-inputs
@@ -3444,17 +3446,18 @@ persistent (on the file system).")
(define-public r-r-rsp
(package
(name "r-r-rsp")
- (version "0.41.0")
+ (version "0.42.0")
(source (origin
(method url-fetch)
(uri (cran-uri "R.rsp" version))
(sha256
(base32
- "01l430avj5ggmdsla2kiriix72g0dlzx9klniq321bs0za808v3c"))))
+ "1zcq0hzi0j7fvj2rs796a1i120wbr0387vck17rrd644awwbsbm0"))))
(properties `((upstream-name . "R.rsp")))
(build-system r-build-system)
(propagated-inputs
- `(("r-r-cache" ,r-r-cache)
+ `(("r-digest" ,r-digest)
+ ("r-r-cache" ,r-r-cache)
("r-r-methodss3" ,r-r-methodss3)
("r-r-oo" ,r-r-oo)
("r-r-utils" ,r-r-utils)))
@@ -3475,13 +3478,13 @@ vignettes.")
(define-public r-mvtnorm
(package
(name "r-mvtnorm")
- (version "1.0-6")
+ (version "1.0-7")
(source (origin
(method url-fetch)
(uri (cran-uri "mvtnorm" version))
(sha256
(base32
- "0i74s9dl4jf1gln6agra8h38qn9ifd5v0gi13caj1da5nrbmn0aa"))))
+ "0f7hzflygdnbwvzadr3knhybhanwg7agqddclj6mhbvwqpgb0qyh"))))
(build-system r-build-system)
(inputs
`(("gfortran" ,gfortran)))
@@ -3494,13 +3497,13 @@ t-probabilities, quantiles, random deviates and densities.")
(define-public r-matrixstats
(package
(name "r-matrixstats")
- (version "0.52.2")
+ (version "0.53.1")
(source (origin
(method url-fetch)
(uri (cran-uri "matrixStats" version))
(sha256
(base32
- "19fjf19cr0p3j9pj17myz39zpi5bh7ci72db3la9my09n6k6mnir"))))
+ "0bkiz5fm09d3512mfr2ymj9qsb1b8aic5l5m6fkaf5j7nsgvqw6z"))))
(properties `((upstream-name . "matrixStats")))
(build-system r-build-system)
(native-inputs
@@ -3518,13 +3521,13 @@ memory usage.")
(define-public r-viridis
(package
(name "r-viridis")
- (version "0.4.0")
+ (version "0.5.0")
(source (origin
(method url-fetch)
(uri (cran-uri "viridis" version))
(sha256
(base32
- "03mha2935k1mw7mjjkq7mrx185hl0m3vq3967iiwbknpivbdxllk"))))
+ "1ka6amybgzqkg3cbwfxwwqzzzpfn6q5jcia5am0bw48y5hbpg97y"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)
@@ -3545,14 +3548,14 @@ most common form of color blindness.")
(define-public r-viridislite
(package
(name "r-viridislite")
- (version "0.2.0")
+ (version "0.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "viridisLite" version))
(sha256
(base32
- "1546h44ng4dxs130jkh6lkh990hmp90m1w45sq5p47n546gr0k9d"))))
+ "1by2l05f0yabwvv64lhnv7bbhx0w683s3wr9j2xda920ghpa23kq"))))
(properties `((upstream-name . "viridisLite")))
(build-system r-build-system)
(home-page "https://github.com/sjmgarnier/viridisLite")
@@ -3596,14 +3599,14 @@ selection.")
(define-public r-tidyr
(package
(name "r-tidyr")
- (version "0.7.2")
+ (version "0.8.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "tidyr" version))
(sha256
(base32
- "1700fry2b3d3ksj7x2f09xl6agjrdnx1rqsc1r8gvzsp5cpflb06"))))
+ "1qjpbj1a2vw6nw4hdb6fgassnrxrdpqwf9a8i6wqnv3wxvjb6zqb"))))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
@@ -3629,17 +3632,14 @@ and tidyr provides no margins or aggregation.")
(define-public r-hexbin
(package
(name "r-hexbin")
- ;; The package tarball was updated in place, resulting in a change in the
- ;; hash value. We decided to bump the version to 1.27.1-1 instead of
- ;; keeping the version at upstream's 1.27.1.
- (version "1.27.1-1")
+ (version "1.27.2")
(source
(origin
(method url-fetch)
- (uri (cran-uri "hexbin" "1.27.1"))
+ (uri (cran-uri "hexbin" version))
(sha256
(base32
- "025d609z1nyy684hwvp34b9mjzkgvild7fvfr95f941dmsikan87"))))
+ "0lpfl0015lg5x7lvv9dr302bca22c7fs91pnd896ypgpzqg7pm26"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)))
@@ -3877,14 +3877,14 @@ package instead.")
(define-public r-hmisc
(package
(name "r-hmisc")
- (version "4.0-3")
+ (version "4.1-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "Hmisc" version))
(sha256
(base32
- "1a7i7azag6pldgala85d8hh7wnx1shamyiriy4jfc65nxrr2lq8w"))))
+ "160l50ppjs69ipcaya1mlcz29zbn5rmqg91r09dvzzvkvwfb47cr"))))
(properties `((upstream-name . "Hmisc")))
(build-system r-build-system)
(native-inputs
@@ -4158,13 +4158,13 @@ mechanism.")
(define-public r-zoo
(package
(name "r-zoo")
- (version "1.8-0")
+ (version "1.8-1")
(source (origin
(method url-fetch)
(uri (cran-uri "zoo" version))
(sha256
(base32
- "0mqklbx92ifwa0awm7gpm4r9dvwa09p55zjxjnypiqsxy532r4h9"))))
+ "16nc5jnpkf5j9vgq3pzssv7knj30mi055wj7q3sygz3l0d88hgfr"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)))
@@ -4676,14 +4676,14 @@ regression methodology including model selections and multivariate statistics.")
(define-public r-pcapp
(package
(name "r-pcapp")
- (version "1.9-72")
+ (version "1.9-73")
(source
(origin
(method url-fetch)
(uri (cran-uri "pcaPP" version))
(sha256
(base32
- "0i2822bv86dpqmk3q17x61nsp3gjjnn4nr8191rwvbiib7xhpgaq"))))
+ "1z2kdf9gfp965xbcd4rg6vf20d1bl443na0qjkpq7gmzpaq6cifa"))))
(properties `((upstream-name . "pcaPP")))
(build-system r-build-system)
(propagated-inputs
@@ -4802,14 +4802,14 @@ of the points.")
(define-public r-fpc
(package
(name "r-fpc")
- (version "2.1-10")
+ (version "2.1-11")
(source
(origin
(method url-fetch)
(uri (cran-uri "fpc" version))
(sha256
(base32
- "15m0p9l9w2v7sl0cnzyg81i2fmx3hrhvr3371544mwn3fpsca5sx"))))
+ "04alsqb5gbhsjg1000d8w52pmpnlwca29r0s12f7n7mdccdv6xar"))))
(build-system r-build-system)
(propagated-inputs
`(("r-class" ,r-class)
@@ -4836,14 +4836,14 @@ groupings.")
(define-public r-vgam
(package
(name "r-vgam")
- (version "1.0-4")
+ (version "1.0-5")
(source
(origin
(method url-fetch)
(uri (cran-uri "VGAM" version))
(sha256
(base32
- "0r59hyp3afmvms890b3v2yyckf8v0qkjf2w11rnqd2zgg1gri0g5"))))
+ "0ik3wyv6jj54bg34z0fzzk4xg0h6x98jqx4q2r7g1f0in0qgbb01"))))
(properties `((upstream-name . "VGAM")))
(build-system r-build-system)
(inputs
@@ -4861,14 +4861,14 @@ VGLMs can be loosely thought of as multivariate generalised linear models.")
(define-public r-pbapply
(package
(name "r-pbapply")
- (version "1.3-3")
+ (version "1.3-4")
(source
(origin
(method url-fetch)
(uri (cran-uri "pbapply" version))
(sha256
(base32
- "0iqhymf65jffh00qf056h1p76xf92bfmij6aymlmgnvn24fv4ybk"))))
+ "0lk5kxac09xzdv6vf7ix6r5bfrm7cnpyr2l5mkd4igpciadszzfd"))))
(build-system r-build-system)
(home-page "https://github.com/psolymos/pbapply")
(synopsis "Adding progress bar to apply functions")
@@ -4925,14 +4925,14 @@ based on an interface to Fortran implementations by M. J. D. Powell.")
(define-public r-rcppeigen
(package
(name "r-rcppeigen")
- (version "0.3.3.3.1")
+ (version "0.3.3.4.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "RcppEigen" version))
(sha256
(base32
- "093g2wmqyk86693l0lzh2va8119w3k7rvw5q24p842jdfv5x5z8l"))))
+ "1m6ssq6lvi36ggf26y4hhq996583pxxdb978jnn1x6r9gdb0q0hi"))))
(properties `((upstream-name . "RcppEigen")))
(build-system r-build-system)
(propagated-inputs
@@ -4994,14 +4994,14 @@ using modular prediction and response module classes.")
(define-public r-quantreg
(package
(name "r-quantreg")
- (version "5.34")
+ (version "5.35")
(source
(origin
(method url-fetch)
(uri (cran-uri "quantreg" version))
(sha256
(base32
- "0bmgfgnmzqwmwwaraliry682yb8kcr396q3rlzrd2qzaa9sgxxh4"))))
+ "18f3qxv1j1bqmq55hzssz8mnp5ww4flhy80rm2v1rk0mmg9paz7m"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
@@ -5048,14 +5048,14 @@ algorithms.")
(define-public r-lme4
(package
(name "r-lme4")
- (version "1.1-14")
+ (version "1.1-15")
(source
(origin
(method url-fetch)
(uri (cran-uri "lme4" version))
(sha256
(base32
- "1vars93604q7kyz6y1f8f886l05jkgj8bs78033l2czypvzki5la"))))
+ "0sc6rvhiizxxpkdc3wps200wg3pqc0d89crn29lzm75fk8qdd7vx"))))
(build-system r-build-system)
(native-inputs
`(("r-rcpp" ,r-rcpp)
@@ -5274,14 +5274,14 @@ diagnostic tools (@code{ctlcurves} and @code{DiscrFact}).")
(define-public r-ranger
(package
(name "r-ranger")
- (version "0.8.0")
+ (version "0.9.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "ranger" version))
(sha256
(base32
- "1fdbm879wx3hlng8s4c4f8f2x5yxz57llakcqnpa0lymybidw3vz"))))
+ "1pilj5pxl8jl0gsy9vsyqxqdqfcxzvphbgvrlp4hf7r9mrfw9v0p"))))
(build-system r-build-system)
(propagated-inputs
`(("r-rcpp" ,r-rcpp)
@@ -5352,14 +5352,14 @@ is supported.")
(define-public r-lubridate
(package
(name "r-lubridate")
- (version "1.7.1")
+ (version "1.7.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "lubridate" version))
(sha256
(base32
- "0pzvazzybzvln3y676yims7whsc74g8i7kgf2nsfbxdq5943z349"))))
+ "0k417a1xp5gxf77ycbnx5apzpc5d25sjm83ss7wmqpbnhnr5dcav"))))
(build-system r-build-system)
(propagated-inputs
`(("r-rcpp" ,r-rcpp)
diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm
index c8e7ce1ee8..29be20699d 100644
--- a/gnu/packages/version-control.scm
+++ b/gnu/packages/version-control.scm
@@ -1602,7 +1602,7 @@ be served with a HTTP file server of your choice.")
(define-public darcs
(package
(name "darcs")
- (version "2.12.4")
+ (version "2.12.5")
(source
(origin
(method url-fetch)
@@ -1610,7 +1610,7 @@ be served with a HTTP file server of your choice.")
"darcs-" version ".tar.gz"))
(sha256
(base32
- "0jfwiwl5k8wspciq1kpmvh5yap4japrf97s9pvhcybxxhaj3ds28"))
+ "0lrm0sal5pl453mkqn8b9fc9l7lwinc140iqihya9g17bk408nrm"))
(modules '((guix build utils)))
;; Remove time-dependent code for reproducibility.
(snippet
@@ -1625,8 +1625,10 @@ be served with a HTTP file server of your choice.")
(arguments
`(#:configure-flags '("-fpkgconfig" "-fcurl" "-flibiconv" "-fthreaded"
"-fnetwork-uri" "-fhttp" "--flag=executable"
- "--flag=library")
- #:tests? #f)) ; 20 failing shell tests out of over 400
+ "--flag=library"
+ "--allow-newer=shelly")
+ ;; FIXME: darcs is not compatible with the latest QuickCheck
+ #:tests? #f))
(inputs
`(("ghc-cmdargs" ,ghc-cmdargs)
("ghc-split" ,ghc-split)
@@ -1644,7 +1646,6 @@ be served with a HTTP file server of your choice.")
("ghc-bytestring-builder" ,ghc-bytestring-builder)
("ghc-cryptohash" ,ghc-cryptohash)
("ghc-data-ordlist" ,ghc-data-ordlist)
- ("ghc-directory" ,ghc-directory)
("ghc-fgl" ,ghc-fgl)
("ghc-system-filepath" ,ghc-system-filepath)
("ghc-graphviz" ,ghc-graphviz)
@@ -1655,7 +1656,6 @@ be served with a HTTP file server of your choice.")
("ghc-mtl" ,ghc-mtl)
("ghc-old-time" ,ghc-old-time)
("ghc-parsec" ,ghc-parsec)
- ("ghc-process" ,ghc-process)
("ghc-random" ,ghc-random)
("ghc-regex-applicative" ,ghc-regex-applicative)
("ghc-regex-compat-tdfa" ,ghc-regex-compat-tdfa)
diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index e550d19bad..5dfd26482d 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -21,7 +21,7 @@
;;; Copyright © 2017 Ethan R. Jones <doubleplusgood23@gmail.com>
;;; Copyright © 2017 Clément Lassieur <clement@lassieur.org>
;;; Copyright © 2017 Gregor Giesen <giesen@zaehlwerk.net>
-;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com>
+;;; Copyright © 2017, 2018 Rutger Helling <rhelling@mykolab.com>
;;; Copyright © 2018 Roel Janssen <roel@gnu.org>
;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com>
;;;
@@ -1009,7 +1009,7 @@ SVCD, DVD, 3ivx, DivX 3/4/5, WMV and H.264 movies.")
(define-public mpv
(package
(name "mpv")
- (version "0.28.0")
+ (version "0.28.1")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1017,10 +1017,7 @@ SVCD, DVD, 3ivx, DivX 3/4/5, WMV and H.264 movies.")
".tar.gz"))
(sha256
(base32
- "1d2p6k3y9lqx8bpdal4grrj8ljy7pvd8qgdq8004fmr38afmbb7f"))
- (patches (search-patches "mpv-CVE-2018-6360-1.patch"
- "mpv-CVE-2018-6360-2.patch"
- "mpv-CVE-2018-6360-3.patch"))
+ "1i1czric6dhbwvyxamzrnwjwsznrn9cpzp6m0m6aahiwpbfbl282"))
(file-name (string-append name "-" version ".tar.gz"))))
(build-system waf-build-system)
(native-inputs
diff --git a/gnu/packages/vim.scm b/gnu/packages/vim.scm
index abd25bc9d6..79bd920436 100644
--- a/gnu/packages/vim.scm
+++ b/gnu/packages/vim.scm
@@ -717,7 +717,7 @@ refactor Vim in order to:
(define-public vifm
(package
(name "vifm")
- (version "0.9")
+ (version "0.9.1")
(source
(origin
(method url-fetch)
@@ -728,7 +728,7 @@ refactor Vim in order to:
"vifm-" version ".tar.bz2")))
(sha256
(base32
- "1zd72vcgir3g9rhs2iyca13qf5fc0b1f22y20f5gy92c3sfwj45b"))))
+ "1cz7vjjmghgdxd1lvsdwv85gvx4kz8idq14qijpwkpfrf2va9f98"))))
(build-system gnu-build-system)
(arguments
'(#:configure-flags '("--disable-build-timestamp")
diff --git a/gnu/packages/w3m.scm b/gnu/packages/w3m.scm
index 14b5994bcf..db23b4d8df 100644
--- a/gnu/packages/w3m.scm
+++ b/gnu/packages/w3m.scm
@@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org>
-;;; Copyright © 2016, 2017 Leo Famulari <leo@famulari.name>
+;;; Copyright © 2016, 2017, 2018 Leo Famulari <leo@famulari.name>
;;; Copyright © 2016 Kei Kebreau <kkebreau@posteo.net>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;;
@@ -36,7 +36,7 @@
(define-public w3m
(package
(name "w3m")
- (version "0.5.3+git20170102")
+ (version "0.5.3+git20180125")
(source (origin
(method git-fetch)
;; Debian's fork of w3m is the only one that is still
@@ -47,7 +47,7 @@
(file-name (git-file-name name version))
(sha256
(base32
- "0p8csd49b550q69bk45ncs2y2x48xij7jj11xapp0s8dn1j7kcgx"))))
+ "0dafdfx1yhrvhbqzslkcapj09dvf64m2jadz3wl2icni0k4msq90"))))
(build-system gnu-build-system)
(arguments
'(#:tests? #f ; no check target
diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm
index 24bbbd347d..a0b59f3969 100644
--- a/gnu/packages/web.scm
+++ b/gnu/packages/web.scm
@@ -3,7 +3,8 @@
;;; Copyright © 2013 Aljosha Papsch <misc@rpapsch.de>
;;; Copyright © 2014, 2015, 2016, 2017 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2014, 2015, 2016 Mark H Weaver <mhw@netris.org>
-;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2018 Raoul Jean Pierre Bonnal <ilpuccio.febo@gmail.com>
;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
;;; Copyright © 2015, 2016, 2017 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2015 Eric Dvorsak <eric@dvorsak.fr>
@@ -85,6 +86,7 @@
#:use-module (gnu packages imagemagick)
#:use-module (gnu packages libidn)
#:use-module (gnu packages libunistring)
+ #:use-module (gnu packages lisp)
#:use-module (gnu packages lua)
#:use-module (gnu packages markup)
#:use-module (gnu packages ncurses)
@@ -3881,13 +3883,13 @@ directory.")
(define-public r-htmlwidgets
(package
(name "r-htmlwidgets")
- (version "0.9")
+ (version "1.0")
(source (origin
(method url-fetch)
(uri (cran-uri "htmlwidgets" version))
(sha256
(base32
- "0plqkfqys1ca3ki7sb7yc6gwjpi7yy4g3mzh7hfy8s6qri0vam0i"))))
+ "09lkmzh35l1420sg0dyh4vgyishqx3g8xmgs2y9z7lbi09xgwwwr"))))
(build-system r-build-system)
(propagated-inputs
`(("r-htmltools" ,r-htmltools)
@@ -3904,26 +3906,24 @@ applications.")
(define-public r-htmltable
(package
(name "r-htmltable")
- (version "1.11.0")
+ (version "1.11.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "htmlTable" version))
(sha256
(base32
- "0x0qrzx6igg5z8jh901d2a8g2idpm5f4frwp1m02910scifcrxwf"))))
+ "1lbpi0kkk8b41w10scmlf27dg5azcv51a4q3p5bpqyphrnqp78k4"))))
(properties `((upstream-name . "htmlTable")))
(build-system r-build-system)
(propagated-inputs
`(("r-checkmate" ,r-checkmate)
- ("r-dplyr" ,r-dplyr)
("r-htmltools" ,r-htmltools)
("r-htmlwidgets" ,r-htmlwidgets)
("r-knitr" ,r-knitr)
("r-magrittr" ,r-magrittr)
("r-rstudioapi" ,r-rstudioapi)
- ("r-stringr" ,r-stringr)
- ("r-tidyr" ,r-tidyr)))
+ ("r-stringr" ,r-stringr)))
(home-page "http://gforge.se/packages/")
(synopsis "Advanced tables for Markdown/HTML")
(description
@@ -5418,6 +5418,47 @@ extensive prebuilt widgets make it possible to build beautiful,
responsive, and powerful applications with minimal effort.")
(license l:artistic2.0)))
+(define-public r-shinydashboard
+ (package
+ (name "r-shinydashboard")
+ (version "0.6.1")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "shinydashboard" version))
+ (sha256
+ (base32
+ "14zi7g5wrngy6lwi9xpvaid7727m6rfdijbb89al9likfhjqzqqy"))))
+ (build-system r-build-system)
+ ;; The directory inst/AdminLTE/ contains a minified JavaScript file.
+ ;; Regenerate it from the included sources.
+ (arguments
+ `(#:modules ((guix build utils)
+ (guix build r-build-system)
+ (ice-9 popen))
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'generate-minified-javascript
+ (lambda _
+ (with-directory-excursion "inst/AdminLTE"
+ (delete-file "app.min.js")
+ (let ((minified (open-pipe* OPEN_READ "uglify-js" "app.js")))
+ (call-with-output-file "app.min.js"
+ (lambda (port)
+ (dump-port minified port))))))))))
+ (propagated-inputs
+ `(("r-htmltools" ,r-htmltools)
+ ("r-shiny" ,r-shiny)))
+ (native-inputs
+ `(("uglify-js" ,uglify-js)))
+ (home-page "http://rstudio.github.io/shinydashboard/")
+ (synopsis "Create dashboards with shiny")
+ (description "This package provides an extension to the Shiny web
+application framework for R, making it easy to create attractive dashboards.")
+ ;; This package includes software that was released under the Expat
+ ;; license, but the whole package is released under GPL version 2 or
+ ;; later.
+ (license l:gpl2+)))
+
(define-public r-crosstalk
(package
(name "r-crosstalk")
diff --git a/gnu/packages/xml.scm b/gnu/packages/xml.scm
index 12a68abae3..055bf8dee7 100644
--- a/gnu/packages/xml.scm
+++ b/gnu/packages/xml.scm
@@ -3,7 +3,7 @@
;;; Copyright © 2013, 2015 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2015 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com>
-;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016, 2017 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2015, 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2015 Raimon Grau <raimonster@gmail.com>
@@ -13,7 +13,7 @@
;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org>
;;; Copyright © 2016, 2017 ng0 <contact.ng0@cryptolab.net>
;;; Copyright © 2016, 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
-;;; Copyright © 2016, 2017 Marius Bakke <mbakke@fastmail.com>
+;;; Copyright © 2016, 2017, 2018 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2017 Adriano Peluso <catonano@gmail.com>
;;; Copyright © 2017 Gregor Giesen <giesen@zaehlwerk.net>
;;; Copyright © 2017 Alex Vong <alexvong1995@gmail.com>
@@ -41,6 +41,9 @@
#:use-module (gnu packages compression)
#:use-module (gnu packages gnupg)
#:use-module (gnu packages java)
+ #:use-module (gnu packages gnuzilla)
+ #:use-module (gnu packages haskell)
+ #:use-module (gnu packages haskell-check)
#:use-module (gnu packages perl)
#:use-module (gnu packages perl-check)
#:use-module (gnu packages python)
@@ -54,6 +57,7 @@
#:use-module (guix build-system gnu)
#:use-module (guix build-system perl)
#:use-module (guix build-system python)
+ #:use-module (guix build-system haskell)
#:use-module (gnu packages linux)
#:use-module (gnu packages pkg-config))
@@ -935,6 +939,15 @@ Libxml2).")
(license (license:x11-style "file://COPYING"
"See 'COPYING' in the distribution."))))
+(define-public xmlsec-nss
+ (package
+ (inherit xmlsec)
+ (name "xmlsec-nss")
+ (inputs
+ `(("nss" ,nss)
+ ("libltdl" ,libltdl)))
+ (synopsis "XML Security Library (using NSS instead of GnuTLS)")))
+
(define-public minixml
(package
(name "minixml")
@@ -1958,3 +1971,109 @@ outputting XML data from Java code.")
(description "XStream is a simple library to serialize Java objects to XML
and back again.")
(license license:bsd-3)))
+
+(define-public ghc-hxt-charproperties
+ (package
+ (name "ghc-hxt-charproperties")
+ (version "9.2.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "hxt-charproperties/hxt-charproperties-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1mml8wglvagqq891rchgli6r8rnkwrqhgsxfl6kb5403pzb18rp4"))))
+ (build-system haskell-build-system)
+ (home-page "https://github.com/UweSchmidt/hxt")
+ (synopsis "Character properties and classes for XML and Unicode")
+ (description
+ "The modules provided by this package contain predicates for Unicode
+blocks and char properties and character predicates defined by XML. The
+supported Unicode version is 7.0.0")
+ (license license:expat)))
+
+(define-public ghc-hxt-unicode
+ (package
+ (name "ghc-hxt-unicode")
+ (version "9.0.2.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://hackage.haskell.org/package/hxt-unicode/hxt-unicode-"
+ version
+ ".tar.gz"))
+ (sha256
+ (base32
+ "0rj48cy8z4fl3zpg5bpa458kqr83adav6jnqv4i71dclpprj6n3v"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-hxt-charproperties" ,ghc-hxt-charproperties)))
+ (home-page
+ "http://www.fh-wedel.de/~si/HXmlToolbox/index.html https://github.com/UweSchmidt/hxt")
+ (synopsis
+ "Unicode en-/decoding functions for utf8, iso-latin-* and other encodings")
+ (description
+ "This package provides Unicode encoding and decoding functions for
+encodings used in the Haskell XML Toolbox. ISO Latin 1-16, utf8, utf16, ASCII
+are supported. Decoding is done with lazy functions, errors may be detected or
+ignored.")
+ (license license:expat)))
+
+(define-public ghc-hxt-regex-xmlschema
+ (package
+ (name "ghc-hxt-regex-xmlschema")
+ (version "9.2.0.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/"
+ "hxt-regex-xmlschema/hxt-regex-xmlschema-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1c4jr0439f5yc05h7iz53fa47g6l2wrvqp6gvwf01mlqajk3nx7l"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-hxt-charproperties" ,ghc-hxt-charproperties)
+ ("ghc-parsec" ,ghc-parsec)
+ ("ghc-text" ,ghc-text)
+ ("ghc-hunit" ,ghc-hunit)))
+ (home-page "http://www.haskell.org/haskellwiki/Regular_expressions_for_XML_Schema")
+ (synopsis "Regular expression library for W3C XML Schema regular expressions")
+ (description
+ "This library supports full W3C XML Schema regular expressions inclusive
+all Unicode character sets and blocks. It is implemented by the technique of
+derivations of regular expressions.")
+ (license license:expat)))
+
+(define-public ghc-hxt
+ (package
+ (name "ghc-hxt")
+ (version "9.3.1.16")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://hackage.haskell.org/package/hxt/hxt-"
+ version
+ ".tar.gz"))
+ (sha256
+ (base32
+ "1qq3ykgn355rx242xjcbqqksgvwr6k2fdj5phw4iv28qqxff6m8d"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-parsec" ,ghc-parsec)
+ ("ghc-mtl" ,ghc-mtl)
+ ("ghc-hxt-charproperties" ,ghc-hxt-charproperties)
+ ("ghc-hxt-unicode" ,ghc-hxt-unicode)
+ ("ghc-hxt-regex-xmlschema" ,ghc-hxt-regex-xmlschema)
+ ("ghc-network-uri" ,ghc-network-uri)))
+ (home-page "https://github.com/UweSchmidt/hxt")
+ (synopsis "Collection of tools for processing XML with Haskell")
+ (description
+ "The Haskell XML Toolbox bases on the ideas of HaXml and HXML, but
+introduces a more general approach for processing XML with Haskell.")
+ (license license:expat)))