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2018-04-05gnu: make-bootstrap: Adjust gawk patch to 4.2.1.Marius Bakke
* gnu/packages/patches/gawk-shell.patch: Update for 4.2.1.
2018-04-02gnu: sqlite: Update to 3.23.0.Marius Bakke
* gnu/packages/databases.scm (sqlite): Update to 3.23.0.
2018-04-02gnu: libgpg-error: Fix building on aarch64-linux.Efraim Flashner
* gnu/packages/patches/gnupg.scm (libgpg-error)[source]: Add patch. * gnu/packages/patches/libgpg-error-aarch64-logging-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2018-04-02gnu: glibc: Fix <https://sourceware.org/bugzilla/show_bug.cgi?id=22644>.Marius Bakke
* gnu/packages/patches/glibc-2.27-git-fixes.patch: Add commit 55ad82e45c.
2018-04-02build-system/meson: Don't override LDFLAGS if already set.Marius Bakke
* guix/build/meson-build-system.scm (configure): Test for LDFLAGS before adding ours.
2018-04-02gnu: ghostscript: Update to 9.23.Marius Bakke
* gnu/packages/ghostscript.scm (ghostscript): Update to 9.23. [source](snippet): Adjust to removed LCMS2 library. [arguments]: Remove FIX-DOC-DIR-PHASE. Prevent docdir compatibility symlink. [inputs]: Remove LCMS2. * gnu/packages/patches/ghostscript-no-header-id.patch: Adjust context.
2018-04-01gnu: libidn: Update to 1.34.Ludovic Courtès
* gnu/packages/libidn.scm (libidn): Update to 1.34.
2018-04-01gnu: commencement: Avoid extra Perl build in the DAG.Ludovic Courtès
* gnu/packages/commencement.scm (grep-final): Move reference to PERL-BOOT0 outside of 'package-with-explicit-inputs'. Previously we would actually depend on a variant of 'perl-boot0' built with %BOOT5-INPUTS, which defeated the intent to not add an extra Perl build in the DAG.
2018-04-01gnu: sed: Update to 4.5.Ludovic Courtès
* gnu/packages/base.scm (sed): Update to 4.5. [arguments]: Remove 'patch-test-suite' phase. [native-inputs]: New field.
2018-04-01gexp: 'compiled-modules' prints a line for each module.Ludovic Courtès
* guix/gexp.scm (compiled-modules)[build]: Add 'processed' parameter to 'process-entry' and 'process-directory'. Print a message before each 'compile-file' call.
2018-04-01gexp: compiled-modules: Factorize build code.Ludovic Courtès
* guix/gexp.scm (compiled-modules)[build]: Factorize 'process-entry'.
2018-04-01gnu: glibc: Reinstate fallback code for systems lacking 'prlimit64'.Ludovic Courtès
* gnu/packages/patches/glibc-reinstate-prlimit64-fallback.patch: New file. * gnu/packages/base.scm (glibc/linux)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2018-03-31gnu: python-pycairo: Update to 1.16.3.Arun Isaac
* gnu/packages/gtk.scm (python-pycairo): Update to 1.16.3. [source]: Remove patch. [build-system]: Switch to python-build-system. [native-inputs]: Remove python-waf. [home-page]: Use HTTPS URI. * gnu/packages/patches/pycairo-wscript.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it.
2018-03-31gnu: python-pytest: Update to 3.5.0.Arun Isaac
* gnu/packages/python.scm (python-six): Replace system* with invoke. (python-six-bootstrap, python2-six-bootstrap, python2-funcsigs-bootstrap): New variables. (python-more-itertools)[propagated-inputs]: Replace python-six with python-six-bootstrap. * gnu/packages/check.scm (python-pytest): Update to 3.5.0. [propagated-inputs]: Add python-attrs-bootstrap, python-more-itertools-bootstrap, python-pluggy and python-six-bootstrap. [properties]: Add python2-variant. (python2-pytest)[propagated-inputs]: Add python2-funcsigs. (python-pytest-bootstrap)[properties]: Add python2-variant. (python2-pytest-bootstrap)[propagated-inputs]: Add python2-funcsigs-bootstrap.
2018-03-31gnu: python-py: Update to 1.5.3.Arun Isaac
* gnu/packages/python.scm (python-py): Update to 1.5.3. [home-page]: Update URI.
2018-03-31gnu: python-hypothesis: Update to 3.52.0.Arun Isaac
* gnu/packages/check.scm (python-hypothesis): Update to 3.52.0. [propagated-inputs]: Add python-attrs and python-coverage. [home-page]: Update URI. * gnu/packages/python.scm (python-attrs-bootstrap, python2-attrs-bootstrap): New variables.
2018-03-31gnu: Add python-more-itertools.Arun Isaac
* gnu/packages/python.scm (python-more-itertools, python2-more-itertools): New variables.
2018-03-31gnu: python-pluggy: Update to 0.6.0.Arun Isaac
* gnu/packages/python.scm (python-pluggy): Update to 0.6.0.
2018-03-31gnu: python-pyasn1: Update to 0.4.2.Arun Isaac
* gnu/packages/python.scm (python-pyasn1): Update to 0.4.2.
2018-03-31gnu: python-attrs: Update to 17.4.0.Arun Isaac
* gnu/packages/python.scm (python-attrs): Update to 17.4.0.
2018-03-29gnu: tzdata: Update to 2018d.Leo Famulari
* gnu/packages/base.scm (tzdata): Update to 2018d.
2018-03-29ld-wrapper: Allow linking with non-store libraries by default.Ludovic Courtès
This was suggested on several occasions, notably <https://bugs.gnu.org/24544>. * gnu/packages/ld-wrapper.in (%allow-impurities?): Default to #t and parse the value of 'GUIX_LD_WRAPPER_ALLOW_IMPURITIES'. * guix/build/gnu-build-system.scm (set-paths): Set 'GUIX_LD_WRAPPER_ALLOW_IMPURITIES'.
2018-03-29ld-wrapper: Don't talk about "impure library".Ludovic Courtès
* gnu/packages/ld-wrapper.in (rpath-arguments): Clarify message instead of saying "impure library".
2018-03-29ld-wrapper: Make sure debugging output goes through.Ludovic Courtès
* gnu/packages/ld-wrapper.in (ld-wrapper): Add call to 'force-output'.
2018-03-29gremlin: Fix typo in export list.Ludovic Courtès
* guix/build/gremlin.scm: Really export 'elf-dynamic-info-soname'.
2018-03-29gnu: libarchive: Add '-L' flags in 'libarchive.pc'.Ludovic Courtès
* gnu/packages/backup.scm (libarchive)[arguments]: Add 'add--L-in-libarchive-pc' phase.
2018-03-29Merge branch 'master' into core-updatesMarius Bakke
2018-03-29gnu: cmake: Update to 3.11.0.Marius Bakke
* gnu/packages/cmake.scm (cmake): Update to 3.11.0. [arguments]: Enable fixed test. Adjust file substitutions. Run tests and "./configure" in parallel. (cmake-3.11): Remove variable. * gnu/packages/storage.scm (ceph)[arguments]: Remove #:cmake.
2018-03-29gnu: r-mutationalpatterns: Update to 1.4.3.Roel Janssen
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.3; [propagated-inputs]: Remove r-gridextra.
2018-03-29gnu: kaiju: Update to 1.6.2.Roel Janssen
* gnu/packages/bioinformatics.scm (kaiju): Update to 1.6.2; [inputs]: Add zlib.
2018-03-29gnu: Add duperemove.Vasile Dumitrascu
* gnu/packages/disk.scm (duperemove): New variable. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-29gnu: Add python-debug.Ludovic Courtès
Suggested by Pjotr Prins <pjotr.public12@thebird.nl>. * gnu/packages/python.scm (python-debug): New variable.
2018-03-29gnu: nano: Update to 2.9.5.Efraim Flashner
* gnu/packages/nano.scm (nano): Update to 2.9.5.
2018-03-29gnu: libgpg-error: Update to 1.28.Marius Bakke
* gnu/packages/gnupg.scm (libgpg-error): Update to 1.28.
2018-03-29gnu: Add r-idr.Roel Janssen
* gnu/packages/cran.scm (r-idr): New variable.
2018-03-29gnu: Add r-amap.Roel Janssen
* gnu/packages/cran.scm (r-amap): New variable.
2018-03-29gnu: Add r-venndiagram.Roel Janssen
* gnu/packages/cran.scm (r-venndiagram): New variable.
2018-03-29gnu: Add r-pastecs.Roel Janssen
* gnu/packages/cran.scm (r-pastecs): New variable.
2018-03-29gnu: libusb4java: Adjust for building with libusb 1.0.22.Ricardo Wurmus
* gnu/packages/libusb.scm (libusb4java)[arguments]: Add phase to remove "-Werror" flag.
2018-03-29gnu: libusb-for-axoloti: Update patch.Ricardo Wurmus
* gnu/packages/patches/libusb-for-axoloti.patch: Update context for libusb 1.0.22.
2018-03-29gnu: Refactor boot-service-type and activation-service-type.Chris Marusich
* gnu/services.scm (boot-service-type) <compose>: Use the "identity" procedure instead of the "append" procedure because it more accurately reflects the intent, which is to simply return the single list of extensions to which fold-services applies the "compose" procedure. (activation-service-type) <compose>: Likewise.
2018-03-29doc: Improve <service-type> documentation.Chris Marusich
* doc/guix.texi (Service Reference): Correct and clarify some statements regarding the "compose" and "extend" procedures of <service-type>.
2018-03-29guix-install.sh: Explicitly set root's home directory.Chris Marusich
* etc/guix-install.sh (ROOT_HOME): New variable. (sys_create_store, sys_enable_guix_daemon, sys_authorize_build_farms): Use ROOT_HOME instead of ~root or the HOME environment variable. * doc/guix.texi (Binary Installation): Instead of assuming that ~ and $HOME refer to root's directory simply because commands are being run as root, explicilty refer to it via ~root. Fixes: <https://bugs.gnu.org/30728>
2018-03-29gnu: tcl, tk: Update to 8.6.8.Marius Bakke
* gnu/packages/tcl.scm (tcl, tk): Update to 8.6.8.
2018-03-29gnu: python: Update to 3.6.5.Marius Bakke
* gnu/packages/python.scm (python-3.6): Update to 3.6.5.
2018-03-29gnu: icu4c: Update to 61.1.Marius Bakke
* gnu/packages/icu4c.scm (icu4c): Update to 61.1.
2018-03-29gnu: util-linux: Update to 2.32.Marius Bakke
* gnu/packages/patches/util-linux-tests.patch: Adjust context. * gnu/packages/patches/util-linux-CVE-2018-7738.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/linux.scm (util-linux): Update to 2.32. [source](patches): Remove 'util-linux-CVE-2018-7738.patch'.
2018-03-28gnu: node: Update to 9.10.0.Jelle Licht
* gnu/packages/node.scm (node): Update to 9.10.0.
2018-03-28gnu: http-parser: Update to 2.8.0.Jelle Licht
* gnu/packages/web.scm (http-parser): Update to 2.8.0.
2018-03-28gnu: xf86-video-ati: Update to 18.0.1.Marius Bakke
* gnu/packages/xorg.scm (xf86-video-ati): Update to 18.0.1.
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