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2024-02-10gnu: r-officer: Update to 0.6.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-officer): Update to 0.6.4. Change-Id: I71997fa352044fa48ae26193bbc6e2a6d0efc344
2024-02-10gnu: r-ggseqlogo: Update to 0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggseqlogo): Update to 0.2. [native-inputs]: Add r-knitr. Change-Id: Ia2cea22a0bd5f6c96303b82207dcbe6678d7d0c3
2024-02-10gnu: r-xfun: Update to 0.42.Ricardo Wurmus
* gnu/packages/cran.scm (r-xfun): Update to 0.42. Change-Id: I3e43a59fcaf2a50595c2efa11a0c9aaf11973170
2024-02-10gnu: r-cvxr: Update to 1.0-12.Ricardo Wurmus
* gnu/packages/cran.scm (r-cvxr): Update to 1.0-12. Change-Id: I94c8f094cbdac0c9533ffd604fc3b7a1b6fdac77
2024-02-10gnu: r-limsolve: Update to 1.5.7.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-limsolve): Update to 1.5.7.1. Change-Id: I12c1e939457aa272bdf073ad760b156c263f2196
2024-02-10gnu: r-extremes: Update to 2.1-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-extremes): Update to 2.1-4. Change-Id: Ie4e30f2ea18f4b5abbba401663e89cc1fc555b54
2024-02-10gnu: r-rmumps: Update to 5.2.1-27.Ricardo Wurmus
* gnu/packages/cran.scm (r-rmumps): Update to 5.2.1-27. Change-Id: I7e1eb956468de977a98f4835019421382e362131
2024-02-10gnu: r-ctrdata: Update to 1.17.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-ctrdata): Update to 1.17.1. Change-Id: Ibc5497bae7ba774aa066944b1a10e90c66038224
2024-02-10gnu: r-rcppthread: Update to 2.1.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppthread): Update to 2.1.7. Change-Id: Ia97e0a99216feaeed4fb6971da36d8521cc0414d
2024-02-10gnu: r-servr: Update to 0.29.Ricardo Wurmus
* gnu/packages/cran.scm (r-servr): Update to 0.29. Change-Id: Id3cd1434a8653d280d1d1114222d1313046a98f0
2024-02-10gnu: r-aer: Update to 1.2-12.Ricardo Wurmus
* gnu/packages/cran.scm (r-aer): Update to 1.2-12. Change-Id: Ibdc99bf4a72aded3e76b8f21b95007d9b9d89189
2024-02-10gnu: r-knitrbootstrap: Update to 1.0.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.3. [native-inputs]: Add r-knitr. Change-Id: Ic049e0c898f7c6a258796a59d87972fc9e0a6ff3
2024-02-10gnu: r-nmf: Update to 0.27.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.27. Change-Id: I85f44258abaaceeef6d20e3b3f29512560f5efbb
2024-02-10gnu: whoogle-search: Update to 0.8.4.Skylar Chan
* gnu/packages/python-web.scm (whoogle-search): Update to 0.8.4. [propagated-inputs]: Add python-validators. Change-Id: I4543808d662e7e946c8a398b28ca963e75d4bfd1 Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-02-10gnu: clojure-tools: Update to 1.11.1.1200.Rostislav Svoboda
* gnu/packages/clojure.scm (clojure-tools): Update to 1.11.1.1200. Change-Id: Ifcd272ab679c5a8634167cfd289ca6719c36bbdb Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-02-10gnu: execline: Correct symlink permissions on the hurd.Christopher Baines
* gnu/packages/skarnet.scm (execline)[arguments]: Patch tools/install.sh umask. Change-Id: I1e5d2497e1fd2ad8a39a5e1ca1c3c409968204a8
2024-02-10build-system: perl: Accept Gexps for #:module-build-flags.Christopher Baines
Matching the change in 2d40e6f7ab04ec367a9a7fc1af3daa507fb60d3c otherwise the cross build derivations are broken, as was the case for emacs-pde. * guix/build-system/perl.scm (perl-cross-build) [module-build-flags]: Accept gexps. Change-Id: I2dc85bc50bc077581e3abfc5baaedc6487118192
2024-02-10gnu: Add python-pdbfixer.nafkhamdc
* gnu/packages/bioinformatics.scm (python-pdbfixer): New variable. Change-Id: I2894a08ab3eed463f052b9df6372d4016b718d1a Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-02-10gnu: nvc: Update to 1.11.3.Danny Milosavljevic
* gnu/packages/fpga.scm (nvc): Update to 1.11.3. [inputs]: Add zstd. Change-Id: I7347a047a559c15beec75bfe5feb0b15a6cc5584
2024-02-09gnu: patool: Update to 2.1.1.Sharlatan Hellseher
* gnu/packages/patool.scm (patool): Update to 2.1.1. Change-Id: I86a5e93b10e377a6705c3b7f4a822d8d54f66483
2024-02-09gnu: patool: Fix build.Sharlatan Hellseher
* gnu/packages/patool.scm (patool): Fix build. [build-system]: Swap to pyproject-build-system. [arguments] <#:test-flags>: Disable failing tests. Change-Id: I53ccec4b39bfae6649bfd715fdb2158b2f7a33e1
2024-02-09gnu: vale: Remove package labeles.Sharlatan Hellseher
* gnu/packages/textutils.scm (vale) [native-inputs]: Remove labeles. Change-Id: Id6ac7bcf26b90291b2ec9de18cde8078f6f8f115
2024-02-09gnu: Deprecate the go-github-com-errata-ai-vale variable.Sharlatan Hellseher
* gnu/packages/ipfs.scm (go-github-com-errata-ai-vale): Rename to "vale". (go-github-com-errata-ai-vale): Define as deprecated by "vale". Change-Id: I3c715a36295cd52e36b16e99f39455b7ad961743
2024-02-09gnu: packages: textuitils: Sort use-module alphabetically.Sharlatan Hellseher
* gnu/packages/textutils.scm: Sort use-module alphabetically to ease maintenance. Change-Id: Ia698a0b3e137ce2fc2f68d0206d209649acdad5e
2024-02-09gnu: moe: Update to 1.14.Andy Tai
* gnu/packages/moe.scm (moe): Update to 1.14. Change-Id: I176ec1a3a2505a4e50426863282dbc73815ae904 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-09gnu: gama: Update to 2.28.Andy Tai
* gnu/packages/gps.scm (gama): Update to 2.28. Change-Id: I5e74bf81e158970559e4937c9563578eae253241 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-09gnu: wlr-randr: Update to 0.4.0.Timotej Lazar
* gnu/packages/wm.scm (wlr-randr): Update to 0.4.0. Change-Id: I3a04bf965c4ec098268c9ac4a1328c6ca575cf9e Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-09gnu: mupdf: Update to 1.23.9.Timotej Lazar
* gnu/packages/pdf.scm (mupdf): Update to 1.23.9. Change-Id: Id67767304d33a09df8cea7b91111729d0bc99366 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-09gnu: dos2unix: Update to 7.5.2.Timotej Lazar
* gnu/packages/textutils.scm (dos2unix): Update to 7.5.2. Change-Id: I8b27da05c0780fe942fe19f00766cd2772c66bc0 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-09gnu: fheroes2: Update to 1.0.11.Vagrant Cascadian
* gnu/packages/games.scm (fheroes2): Update to 1.0.11. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-09gnu: syncthing: Update to 1.27.2.David Pflug
* gnu/packages/syncthing.scm (syncthing): Update to 1.27.2. Change-Id: Ifc6af7a518d4dfc75e42889de1a0873cdcbdfaaf Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-09gnu: vxl: Update to 3.5.0.Felix Gruber
* gnu/packages/image-processing.scm (vxl): Update to 3.5.0. Change-Id: I90eeb3659b0b208591e7eb6b2bfa19f28cb39a6f Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-09gnu: clifm: Update to 1.16Rodion Goritskov
* gnu/packages/clifm.scm (clifm): Update to 1.16. Change-Id: I0bbc1599c4f5cfdfea4e662c3e61318c3c1495a6 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-09gnu: pigz: Update to 2.8.Greg Hogan
* gnu/packages/compression.scm (pigz): Update to 2.8. Change-Id: I058815637f2bbcd700c0f2b5f46aa0a307450d3f Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-09gnu: bcachefs-tools: Restyle format.Ahmad Draidi
* gnu/packages/file-systems.scm (bcachefs-tools): Reindent all lines. Change-Id: I6f3ae711daf2f5d66724f513fe5e8876147f5ccf Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-09gnu: bcachefs-tools: Update to 1.4.1.Ahmad Draidi
* gnu/packages/file-systems.scm (bcachefs-tools): Update to 1.4.1. [source]: Use version instead of commit. [arguments]:<#:make-flags>: Add "PKGCONFIG_UDEVRULESDIR" to put udev rules under "PREFIX" folder. [inputs]: Add bash-minimal to fix lint. Change-Id: I6818bc41260586664d408234323bdc9461e4b8e1 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-09gnu: wabt: Update to 1.0.34.Vagrant Cascadian
* gnu/packages/web.scm (wabt): Update to 1.0.34. [arguments]: Disable tests on !x86_64.
2024-02-09gnu: diffoscope: Update to 256 [security fixes].Vagrant Cascadian
Fixes: https://salsa.debian.org/reproducible-builds/diffoscope/-/issues/361 * gnu/packages/diffoscope.scm (diffoscope): Update to 256.
2024-02-09gnu: kubo: Update to 0.19.0.Artyom V. Poptsov
* gnu/packages/ipfs.scm (kubo): Update to 0.19.0. [arguments]: Use go-1.20. Change-Id: I4a267c4712f5dc13b200bdc3a59105265093b392 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-08gnu: linux-libre 6.1: Update to 6.1.77.Wilko Meyer
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.77. (linux-libre-6.1-pristine-source): Update hash. Change-Id: I6f33c1d4d153949be18bbbc89cec6605557d95bb Signed-off-by: Leo Famulari <leo@famulari.name>
2024-02-08gnu: linux-libre 6.6: Update to 6.6.16.Wilko Meyer
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.16. (linux-libre-6.6-pristine-source): Update hashes. Change-Id: I5b9ff1b084f3972c1f7f1833c520ed855cbcd0e6 Signed-off-by: Leo Famulari <leo@famulari.name>
2024-02-08gnu: linux-libre 6.7: Update to 6.7.4.Wilko Meyer
* gnu/packages/linux.scm (linux-libre-6.7-version): Update to 6.7.4. (linux-libre-6.7-pristine-source): Update hashes. Change-Id: I5820f45c98994fc43748b0fafde25465bf63b9ac Signed-off-by: Leo Famulari <leo@famulari.name>
2024-02-08gnu: opam: Update to 2.1.5.pukkamustard
* gnu/packages/ocaml.scm (opam): Update to 2.1.5. [native-inputs]: Add more test data. [arguments]: Disable failing test. (ocaml-graph): Update to 2.0.0. (ocaml-dose3): Update to 7.0.0. * gnu/packages/patches/ocaml-dose3-Fix-for-ocaml-4.06.patch: Remove. * gnu/packages/patches/ocaml-dose3-Install-mli-cmx-etc.patch: Remove. * gnu/packages/patches/ocaml-dose3-add-unix-dependency.patch: Remove. * gnu/packages/patches/ocaml-dose3-dont-make-printconf.patch: Remove. * gnu/local.mk (dist_path_DATA): Unregister removed patches. Change-Id: Ie715998a6d7740332187e1fe0742631964ba5a8a Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2024-02-08gnu: ocaml-base64: Update to 3.5.1.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-base64): Update to 3.5.1. Change-Id: I4732c7b8711af79e09536adc478d84ca0e29408c
2024-02-08gnu: frama-c: Update to 27.1.Julien Lepiller
* gnu/packages/maths.scm (frama-c): Update to 27.1. (why3): Update to 1.6.0. Change-Id: I74191e4274d58a88a772413875fbf7de4d243fec
2024-02-08gnu: Add dune-site.Julien Lepiller
* gnu/packages/ocaml.scm (dune-site): New variable. Change-Id: Idbb555f023a179d52bcf6839c7f37506813ae2b4
2024-02-08gnu: Add dune-private-libs.Julien Lepiller
* gnu/packages/ocaml.scm (dune-private-libs): New variable. Change-Id: I6d2b62745459626d5d1363c1251449b959f8a544
2024-02-08gnu: Add dune-stdune.Julien Lepiller
* gnu/packages/ocaml.scm (dune-stdune): New variable. Change-Id: I8993bd7157f6edd0f02d5c9a5bbc54915918ff15
2024-02-08gnu: Add dune-dyn.Julien Lepiller
* gnu/packages/ocaml.scm (dune-dyn): New variable. Change-Id: I34907a758c146d9f18ab5807c069dfe104e6854f
2024-02-08gnu: Add dune-ordering.Julien Lepiller
* gnu/packages/ocaml.scm (dune-ordering): New variable. Change-Id: I78d81dfc2523b47bdca6430e2f9961cf39c7335a