Age | Commit message (Collapse) | Author |
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* gnu/packages/statistics.scm (r-batchjobs): Update to 1.7.
[propagated-inputs]: Add r-backports, r-data-table, and r-stringi; remove
r-fail and r-stringr.
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* gnu/packages/maths.scm (r-pracma): Update to 2.1.1.
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* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.1.
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* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.12.1.
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* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.17.
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* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.1.
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* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.2.
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* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.2.
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* gnu/packages/bioinformatics.scm (r-getopt): Update to 1.20.1.
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* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.40.1.
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* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.1.
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* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.18.1.
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* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.1.
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* gnu/packages/cran.scm (r-circlize): Update to 0.4.2.
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* gnu/packages/cran.scm (r-rcpp): Update to 0.12.14.
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* gnu/packages/cran.scm (r-timedate): Update to 3042.101.
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* gnu/packages/statistics.scm (r-stringi): Update to 1.1.6.
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* gnu/packages/statistics.scm (r-devtools): Update to 1.13.4.
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* gnu/packages/statistics.scm (r-mclust): Update to 5.4.
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* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.1.
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* gnu/packages/statistics.scm (r-car): Update to 2.1-6.
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* gnu/packages/statistics.scm (r-sn): Update to 1.5-1.
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* gnu/packages/statistics.scm (r-openssl): Update to 0.9.9.
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* gnu/packages/statistics.scm (r-hms): Update to 0.4.0.
[propagated-inputs]: Add r-rlang and r-pkgconfig.
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* gnu/packages/cran.scm (r-dendextend): Update to 1.6.0.
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* gnu/packages/cran.scm (r-recipes): Update to 0.1.1.
[propagated-inputs]: Add r-broom and r-matrix.
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* gnu/packages/cran.scm (r-broom): New variable.
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* gnu/packages/cran.scm (r-psych): New variable.
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* gnu/packages/databases.scm (mongodb): Switch to scons-build-system.
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* gnu/packages/music.scm (klick): Switch to scons-build-system.
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* gnu/packages/games.scm (pingus): Switch to scons-build-system.
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* gnu/packages/game-development.scm (godot): Switch to scons-build-system.
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* gnu/packages/bioinformatics.scm (metabat): Switch to scons-build-system.
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* gnu/packages/web.scm (serf): Switch to scons-build-system.
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* gnu/packages/image.scm (gpick): Switch to scons-build-system.
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* gnu/packages/direct-connect.scm (linuxdcpp): Switch to scons-build-system.
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* guix/build-system/scons.scm: New file.
* guix/build/scons-build-system.scm: New file.
* Makefile.am (MODULES): Register them.
* doc/guix.texi (Build Systems): Add scons-build-system.
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* gnu/packages/python.scm (scons): Update to 3.0.1.
(scons-python2): New variable.
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* gnu/packages/bootloaders.scm (dtc)[patches]: Add dtc-32-bits-check.patch and
dtc-format-modifier.patch to fix build and tests on 32 bits platforms.
* gnu/packages/patches/dtc-32-bits-check.patch : New file.
* gnu/packages/patches/dtc-format-modifier.patch : New file.
* gnu/local.mk (dist_patch_DATA): Add two above patches.
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* gnu/packages/statistics.scm (r-matrix): Update to 1.2-12.
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* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
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* gnu/packages/statistics.scm (r-minimal): Update to 3.4.3.
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Suggested by Mark H Weaver <mhw@netris.org>
at <https://lists.gnu.org/archive/html/guix-devel/2017-11/msg00389.html>.
* gnu/packages/package-management.scm (guix)[arguments]: Move
'bootstrap' phase back after 'unpack'.
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* doc/guix.texi (Substitute Server Authorization): Give the absolute
file name of 'hydra.gnu.org.pub' in the snippet.
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This is a follow-up to 56f0feb6781e3680541d7adc21d6b3b4746a33ca
and 63087721bb54a14dc04ec424474386ae98f7771b, which accidentally
enabled tests for grub-efi on other platforms.
* gnu/packages/bootloaders.scm (grub-efi)[arguments]: Override inherited
tests field and disable on all platforms.
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* gnu/packages/mail.scm (exim): Update to 4.89.1.
[source]: Remove patches for fixed CVEs (all of them).
* gnu/packages/patches/exim-CVE-2017-16943.patch: Delete file...
* gnu/packages/patches/exim-CVE-2017-16944.patch: ...as well as this file...
* gnu/packages/patches/exim-CVE-2017-1000369.patch: ...and this file.
* gnu/local.mk (dist_patch_DATA): Remove all of them.
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This reduces the closure size from 225 MiB to 80 MiB, while still
supporting HTTP(S) access.
* gnu/packages/version-control.scm (libgit2)[source](modules, snippet):
New fields.
[inputs]: Remove CURL; add HTTP-PARSER.
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Previously things returned by 'program-file', such as %MODPROBE-WRAPPER
in (gnu services), would refer to 'guile-final'. This would introduce
'guile-final' in the system closure, which is otherwise absent. By
referring to 'guile-2.2' we remove that extra Guile.
* guix/gexp.scm (default-guile): Refer to GUILE-2.2 instead of
GUILE-FINAL.
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* gnu/packages/wm.scm (spectrwm)[description]: Fix typo and use @dfn.
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* gnu/packages/haskell.scm (ghc-happy): Update to 1.19.8.
[arguments]: Delete; run all tests.
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