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2024-03-20gnu: emacs-extempore-mode: Update to 0.0.0-1.92e0fff.Giacomo Leidi
* gnu/packages/emacs-xyz.scm (emacs-extempore-mode): Update to to 0.0.0-1.92e0fff. Change-Id: I1e4cfebedf5450384e40425619925ecdf7465a64 Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-20gnu: emacs-evil-collection: Update to 0.0.10.apoorv569
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 0.0.10. Signed-off-by: Christopher Baines <mail@cbaines.net> Change-Id: I864c9a6434e9ba46cfb510183962aa6b3739b32a
2024-03-20gnu: python-joblib: Update to 1.3.2.Nicolas Graves
* gnu/packages/python-xyz.scm (python-joblib): Update to 1.3.2. [build-system]: Update to pyproject-build-system. [arguments] <#:phases>: Remove check phase. <#:test-flags>: Keep former test flag. [propagated-inputs]: Add python-psutil. Change-Id: Ide110a19431b1d26e1d7dd8d1adc3b3f0f417749 Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-20gnu: xfce4-dev-tools: Add libxslt as a native-input.Christopher Baines
As the configure script is looking for it. * gnu/packages/xfce.scm (xfce4-dev-tools)[native-inputs]: Add libxslt. Change-Id: Ia7ab573bbdf7461fc68053667a5962717afd0015
2024-03-20gnu: electron-cash: Update to 4.4.0.Guillaume Le Vaillant
* gnu/packages/finance.scm (electron-cash): Update to 4.4.0. Change-Id: Ibe9ee61d4d2817b68fb36fb3072c6d16b8bc1016
2024-03-20gnu: nyxt: Update to 3.11.5.Andre A. Gomes
* gnu/packages/web-browsers.scm (nyxt): Update to 3.11.5. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-03-20gnu: sbcl-slime-swank: Update to 2.29.1.Andre A. Gomes
* gnu/packages/lisp-xyz.scm (sbcl-slime-swank): Update to 2.29.1. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-03-20gnu: emacs-slime: Update to 2.29.1.Andre A. Gomes
* gnu/packages/emacs-xyz.scm (emacs-slime): Update to 2.29.1. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-03-20gnu: txr: Update to 294.Guillaume Le Vaillant
* gnu/packages/lisp.scm (txr): Update to 294. Change-Id: I53693122aaf5b2c0ae8f7f13e846de81f1525fc1
2024-03-19gnu: Add alsa-midi-latency-test.Giacomo Leidi
* gnu/packages/audio.scm (alsa-midi-latency-test): New variable. Change-Id: I35d3047cb997c5787de515a38ae0a0eb8f12600d Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-03-19gnu: combinatorial-blas: Skip failing tests.Romain GARBAGE
* gnu/packages/maths.scm (combinatorial-blas): Add new phase. Change-Id: Ifefb2b17e6758547d38290753a7cd338032a6abb Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-03-19gnu: Add python-pypugjs.Tanguy Le Carrour
* gnu/packages/python-xyz.scm (python-pypugjs): New variable. Change-Id: I050ab42d0149fcffddcf6b12dd9c1ddea23f84c9 Signed-off-by: Tanguy Le Carrour <tanguy@bioneland.org> Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-03-19gnu: hikari: Build against wlroots@0.15.stuebinm
It fails to build with versions of wlroots newer than 0.15, which seems unlikey to be fixed https://hub.darcs.net/raichoo/hikari/issue/45 * gnu/packages/wm.scm (wlroots-0.15): New variable. (hikari)[inputs]: Replace wlroots with wlroots-0.15. Change-Id: Id90e1e1ff399afe54fff68167f497f0484d2c218 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-03-19doc: cookbook: Account for ‘guix pull’ in /etc/profile instructions.Ludovic Courtès
* doc/guix-cookbook.texi (Setting Up Compute Nodes): Include $HOME/.config/guix/current. Change-Id: I6c1c42394991af8f1fa7c2630bdb4b0aef946c2b
2024-03-19git authenticate: Document ‘--end’.Ludovic Courtès
* guix/scripts/git/authenticate.scm (show-help): Document ‘--end’. * doc/guix.texi (Invoking guix git authenticate): Likewise. Reported-by: Tomas Volf <~@wolfsden.cz> Change-Id: Ia646203ce2f721487de547c76b9488754c70db66
2024-03-19describe: Try harder to find the ‘guix pull’ profile.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/66705>. The strategy used by ‘current-profile’ so far would fail to find the right profile (the one created by ‘guix pull’ or ‘guix time-machine’) in cases where said profile is itself included in another profile. This happens, for instance, when running ‘guix shell -CW -- guix describe’, which, as a result, would display nothing but the ‘guix’ channel. This patch fixes that by having ‘current-profile’ not just check for the presence of a ‘manifest’ file but also parse it to determine whether it’s a ‘guix pull’ kind of manifest. * guix/describe.scm (find-profile): New procedure. (current-profile): Adjust to use it. Change-Id: I9194f54ce1496a6591e247c76203f497f28c330b
2024-03-19profiles: ‘read-manifest’ raises to ‘&profile-error’ upon version ↵Ludovic Courtès
mismatch. * guix/profiles.scm (sexp->manifest): In the catch-all clause, raise to ‘&profile-error’ in addition to ‘&message’. Change-Id: Ieb08187b388531c2157bfe67fb1b7319dbbb4ff3
2024-03-19gnu: icecat: Update to 115.9.0-guix0-preview1 [security fixes].Mark H Weaver
Includes fixes for CVE-2023-5388, CVE-2024-0743, CVE-2024-2605, CVE-2024-2607, CVE-2024-2608, CVE-2024-2610, CVE-2024-2611, CVE-2024-2612, CVE-2024-2614, and CVE-2024-2616. * gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes.
2024-03-19gnu: snakemake-7: Patch tibanna command line.Ricardo Wurmus
* gnu/packages/python-xyz.scm (snakemake-7)[arguments]: Remove store reference in tibanna command line. Change-Id: I339f4c3133a0e687723a53277818749a8e5fc97a
2024-03-19gnu: r-hmisc: Update to 5.1-2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-hmisc): Update to 5.1-2. Change-Id: I6b6ab9916f58323f0bc523e3c8ff0a22e59d63b5
2024-03-19gnu: r-tidyselect: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tidyselect): Update to 1.2.1. Change-Id: Id5cddcbd6180070c16651634eff8cd9c4839c104
2024-03-19gnu: r-digest: Update to 0.6.35.Ricardo Wurmus
* gnu/packages/statistics.scm (r-digest): Update to 0.6.35. Change-Id: I054d6daa5b056241547411e83a30a7d1e7afd2d1
2024-03-19gnu: r-ragg: Update to 1.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ragg): Update to 1.3.0. Change-Id: I3e44fe7dab732944082223cbde4f6cbd2800714f
2024-03-19gnu: r-mlr3learners: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.6.0. Change-Id: Iac86172bfc5d3d3b719ccacb4b87c120ce2cc596
2024-03-19gnu: r-seurat: Update to 5.0.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-seurat): Update to 5.0.3. Change-Id: Id86830ab2ce8122989bf88149fb9d733b8a458fa
2024-03-19gnu: r-erm: Update to 1.0-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-erm): Update to 1.0-6. Change-Id: I2bfd514d63ee0ae873d4368f7fb2ba9798998cd5
2024-03-19gnu: r-gamlss-data: Update to 6.0-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-gamlss-data): Update to 6.0-6. Change-Id: I6bb7a4ae35b7c83d132979a6024d4cedabe97eb3
2024-03-19gnu: r-parameters: Update to 0.21.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-parameters): Update to 0.21.6. Change-Id: Ie0c10257117909ca246eb01b9a15b94adbf6d85c
2024-03-19gnu: r-rms: Update to 6.8-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rms): Update to 6.8-0. Change-Id: If854e5151f3821f6a4c660e268ebd4ff063521dd
2024-03-19gnu: r-bigrquery: Update to 1.5.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-bigrquery): Update to 1.5.1. Change-Id: I6aca258386093f1eb6fed5b6501b28b26d05b31f
2024-03-19gnu: r-tm: Update to 0.7-12.Ricardo Wurmus
* gnu/packages/cran.scm (r-tm): Update to 0.7-12. Change-Id: Ie148245220ef5ea28d118696b92078dd7a84dd3e
2024-03-19gnu: r-remotes: Update to 2.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-remotes): Update to 2.5.0. Change-Id: Ie68b8b2a04fb6d2b0d2d15936e25e7d026a8d1b6
2024-03-19gnu: r-targets: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-targets): Update to 1.6.0. Change-Id: I4e72c19c1aa0c9486f5b495e60e969f043a6936e
2024-03-19gnu: r-tarchetypes: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-tarchetypes): Update to 0.8.0. Change-Id: I934c092307515bb316c0265bc9145ec9b6a15e4d
2024-03-19gnu: r-wrs2: Update to 1.1-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-wrs2): Update to 1.1-6. Change-Id: If0f280067722cddf1dd3024076a4e19faeea652b
2024-03-19gnu: r-insight: Update to 0.19.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-insight): Update to 0.19.9. Change-Id: I1f48e61ac918c1b60f3962a79793994fc7de6243
2024-03-19gnu: r-ggsci: Update to 3.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggsci): Update to 3.0.2. Change-Id: I0b241d7bf9dd12c14a687e8a9132db1ac7bb71a9
2024-03-19gnu: r-nestedcv: Update to 0.7.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-nestedcv): Update to 0.7.8. [propagated-inputs]: Remove r-magrittr; add r-rocr. Change-Id: Icf9c947cea5e88395eb036bb2ea12004e49141bf
2024-03-19gnu: r-tinytex: Update to 0.50.Ricardo Wurmus
* gnu/packages/cran.scm (r-tinytex): Update to 0.50. Change-Id: Icfeb215ccd37ad816719639f925cde545196bbde
2024-03-19gnu: r-processx: Update to 3.8.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-processx): Update to 3.8.4. Change-Id: Ie11b9d8a99df3e316b61a74f9bd12cbb0ab7dbb3
2024-03-19gnu: r-coro: Update to 1.0.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-coro): Update to 1.0.4. Change-Id: I42900489764208510b0f80c910954c6b5214d51d
2024-03-19gnu: r-psych: Update to 2.4.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-psych): Update to 2.4.3. Change-Id: Ib7e464f2e2ec9a6d6eb5768e9ac8160f403777df
2024-03-19gnu: r-pkgbuild: Update to 1.4.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.4.4. Change-Id: Ie936c7da08a22bb41dc77a42b05dfccf794af1cb
2024-03-19gnu: r-sass: Update to 0.4.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-sass): Update to 0.4.9. Change-Id: I4e2e0d7ea1ba6ded92b254436ac7d401a62c667a
2024-03-19gnu: r-zcompositions: Update to 1.5.0-3.Ricardo Wurmus
* gnu/packages/cran.scm (r-zcompositions): Update to 1.5.0-3. Change-Id: Ic234af6e5fbcae562107b382a0bfaafaae948bb8
2024-03-19gnu: r-gwasexacthw: Update to 1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-gwasexacthw): Update to 1.2. Change-Id: I385f01483d7fdc09d80af927ddba3953f6b0c169
2024-03-19gnu: r-igraph: Update to 2.0.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-igraph): Update to 2.0.3. [inputs]: Remove gmp. Change-Id: If54bcfc50b631a81b25a25829ab4aa3fcfd2ed29
2024-03-19gnu: snakemake-5: Use G-expression.Ricardo Wurmus
* gnu/packages/python-xyz.scm (snakemake-5)[arguments]: Use #$output instead of referencing "out" in outputs. Change-Id: Ie3d6d5788c4db4060e26079cb81441f5bc6f08e8
2024-03-19gnu: r-arrow: Update to 15.0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-arrow): Update to 15.0.1. Change-Id: If22201b2e8f15bb13fdb9dc3d03b95cb4a437e78
2024-03-19gnu: apache-arrow: Update to 15.0.1.Ricardo Wurmus
* gnu/packages/databases.scm (apache-arrow): Update to 15.0.1. Change-Id: I68b1eca089e7bb2a6d6a034264b99dc6fb2a8851