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2019-07-10gnu: sedsed: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (sedsed)[home-page]: Use HTTPS.
2019-07-10gnu: cvs: Rename patch file.Efraim Flashner
* gnu/packages/version-control.scm (cvs)[source]: Rename patch. * gnu/packages/patches/cvs-2017-12836.patch: Rename to ... * gnu/packages/patches/cvs-CVE-2018-12836.patch: ... this. * gnu/local.mk (dist_patch_DATA): Register it.
2019-07-10gnu: libexif: Fix CVE-2018-20030.Efraim Flashner
* gnu/packages/photo.scm (libexif)[source]: Add patch. * gnu/packages/patches/libexif-CVE-2018-20030.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2019-07-10gnu: strongswan: Update to 5.8.0 [fixes CVE-2018-17540, CVE-2018-2065{0,1}].Efraim Flashner
* gnu/packages/networking.scm (strongswan): Update to 5.8.0.
2019-07-10gnu: net-snmp: Mark package not affected by CVE-2015-8100.Efraim Flashner
* gnu/packages/networking.scm (net-snmp)[properties]: New field.
2019-07-10gnu: testdisk: Download over HTTPS.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (testdisk)[source]: Use HTTPS.
2019-07-10gnu: testdisk: Update to 7.1.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (testdisk): Update to 7.1.
2019-07-10gnu: sedsed: Update to 1.1.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (sedsed): Update to 1.1. [arguments]: Use (default) Python (3).
2019-07-10gnu: sedsed: Symlink after wrapping.Tobias Geerinckx-Rice
Drop unused .sedsed-real symlink and avoid sedsed → sedsed.py → .sedsed.py-real exec chain. * gnu/packages/admin.scm (sedsed)[arguments]: Move ‘symlink’ phase after ‘wrap’.
2019-07-10gnu: mutter: Remove duplicate gtk+ input.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (mutter)[arguments]: Remove duplicate gtk+ from propagated-inputs.
2019-07-10gnu: a2ps: Fix CVE-2015-8107.Efraim Flashner
* gnu/packages/pretty-print.scm (a2ps)[source]: Add patch. * gnu/packages/patches/a2ps-CVE-2015-8107.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2019-07-10gnu: mupdf: Update to 1.15.0 [fixes CVE-2018-18662, CVE-2018-19777,Efraim Flashner
CVE-2018-1988{1,2}, CVE-2019-613{0,1}, CVE-2019-7321]. * gnu/packages/pdf.scm (mupdf): Update to 1.15.0. [source]: Update source snippet.
2019-07-10gnu: mujs: Update to 1.0.6 [fixes CVE-2019-1141{1,2,3}, CVE-2019-12798].Efraim Flashner
* gnu/packages/javascript.scm (mujs): Update to 1.0.6. [source]: Download using url-fetch. [arguments]: Update 'install-shared-library phase. [home-page]: Update to new home-page.
2019-07-10gnu: plib: Fix CVE-2011-4620, CVE-2012-4552.Efraim Flashner
* gnu/packages/game-development.scm (plib)[patches]: Add patches. * gnu/packages/patches/plib-CVE-2011-4620.patch, gnu/packages/patches/plib-CVE-2012-4552.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
2019-07-10gnu: python-gnupg: Update to 0.4.4 [fixes CVE-2019-6690].Efraim Flashner
* gnu/packages/gnupg.scm (python-gnupg): Update to 0.4.4.
2019-07-10gnu: gpgme: Add updater properties.Efraim Flashner
* gnu/packages/gnupg.scm (gpgme)[properties]: New field. Add ftp-server, ftp-directory.
2019-07-10gnu: npth: Add updater properties.Efraim Flashner
* gnu/packages/gnupg.scm (npth)[properties]: New field. Add ftp-server, ftp-directory.
2019-07-10gnu: gpa: Update to 0.10.0.Efraim Flashner
* gnu/packages/gnupg.scm (gpa): Update to 0.10.0.
2019-07-10gnu: gpa: Add updater properties.Efraim Flashner
* gnu/packages/gnupg.scm (gpa)[properties]: New field, add ftp-server, ftp-directory.
2019-07-10gnu: postgresql@9: Update to 9.6.14 [fixes CVE-2018-1058, CVE-2019-9193]Efraim Flashner
* gnu/packages/databases.scm (postgresql@9): Update to 9.6.14.
2019-07-10gnu: gnupg: Update to 2.2.17.Efraim Flashner
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.17.
2019-07-09gnu: icecat: Update to 60.8.0-guix1 [security fixes].Mark H Weaver
Includes fixes for CVE-2019-9811, CVE-2019-11709, CVE-2019-11711, CVE-2019-11712, CVE-2019-11713, CVE-2019-11715, CVE-2019-11717, CVE-2019-11719, CVE-2019-11729, and CVE-2019-11730. * gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.8.0-guix1. (icecat-source)[upstream-firefox-source]: Update hash. (icecat): Refresh some stale comments.
2019-07-10Merge branch 'master' into stagingMarius Bakke
2019-07-10gnu: ungoogled-chromium: Increase build timeout.Marius Bakke
* gnu/packages/chromium.scm (ungoogled-chromium)[properties]: Set TIMEOUT to 40 hours.
2019-07-09gnu: iproute2: Update to 5.2.0.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (iproute): Update to 5.2.0.
2019-07-09gnu: python-internetarchive: Update to 1.8.5.Oleg Pykhalov
* gnu/packages/web.scm (python-internetarchive)[version]: Update to 1.8.5. [source](modules, snippet): New fields.
2019-07-09gnu: wgetpaste: Update to 2.29.Efraim Flashner
* gnu/packages/wget.scm (wgetpaste): Update to 2.29. [arguments]: Replace default paste service. Install license file.
2019-07-09gnu: emacs-stumpwm-mode: Update to 0.0.1-1.8fbe071.Oleg Pykhalov
* gnu/packages/emacs-xyz.scm (emacs-stumpwm-mode): Update to 0.0.1-1.8fbe071.
2019-07-09gnu: r-biocinstaller: Remove entirely.Tobias Geerinckx-Rice
This follows up on commit 0971f8bd884b6e92b77d9e12030cd58279699183, which led to ‘r-biocmanager: unbound variable’ errors. See <https://lists.gnu.org/archive/html/guix-devel/2019-07/msg00120.html>. * gnu/packages/bioinformatics.scm (r-biocinstaller): Remove variable.
2019-07-09gnu: Add anonip.Hartmut Goebel
* gnu/packages/web.scm (anonip): New variable.
2019-07-09gnu: snap: Update to 5.0.1.Nicolas Goaziou
* gnu/packages/education.scm (snap): Update to 5.0.1.
2019-07-09gnu: musescore: Update to 3.2.3.Nicolas Goaziou
* gnu/packages/music.scm (musescore): Update to 3.2.3.
2019-07-09gnu: libmicrohttpd: Update to 0.9.65.Tobias Geerinckx-Rice
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.65.
2019-07-09gnu: grub: Build ‘grub-mount’.Tobias Geerinckx-Rice
This increases the closure size by a mere 1.8 MiB (0.8%). * gnu/packages/bootloaders.scm (grub)[inputs]: Add fuse.
2019-07-09gnu: grub: Update to 2.04.Tobias Geerinckx-Rice
* gnu/packages/bootloaders.scm (grub): Update to 2.04. [source]: Remove upstreamed patches. [arguments]: Don't require Python. Add a ‘disable-pixel-perfect-test’ phase to skip tests that fail with with our newer Unifont. * gnu/packages/patches/grub-efi-fat-serial-number.patch: Adjust context. * gnu/packages/patches/grub-binutils-compat.patch, gnu/packages/patches/grub-check-error-efibootmgr.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
2019-07-08guix-install.sh: Don't initialise ~/.gnupg.Tobias Geerinckx-Rice
* etc/guix-install.sh (chk_gpg_keyring): Call gpg with ‘--dry-run’.
2019-07-08guix-install.sh: Check for PGP key separately.Tobias Geerinckx-Rice
* etc/guix-install.sh (chk_gpg_keyring): New function to handle the public key check previously stuffed into chk_require. (main): Call it.
2019-07-08discovery: Handle edge case in scheme-files when looking at symlinks.Christopher Baines
Previously, this code would cause crashes in Guix (running guix package -s for example) which could be experienced when Emacs creates temporary files in the gnu/packages/patches directory when a patch file has been edited, but not saved. * guix/discovery.scm (scheme-files): Add else clause to cond used when handling symlinks.
2019-07-08guix-install.sh: Add missing ‘local’ declaration.Tobias Geerinckx-Rice
* etc/guix-install.sh (chk_require): Make $c local.
2019-07-08guix-install.sh: Treat REQUIRE as the array it is.Tobias Geerinckx-Rice
Don't flatten it into a string only to split it again later. * etc/guix-install.sh (chk_require): Iterate over array elements, not string tokens. (main): Pass $REQUIRE as an array of arguments.
2019-07-08scripts: environment: Add --no-cwd.Carl Dong
* doc/guix.texi (Invoking guix environment): Add --no-cwd. * guix/scripts/environment.scm (show-help, %options): Add --no-cwd. (launch-environment/container): Add 'map-cwd?' param; only add mapping for cwd if #t. Only change to cwd within container if #t, otherwise home. (guix-environment): Error if --no-cwd without --container. Provide '(not no-cwd?)' to launch-environment/container as 'map-cwd?'. * tests/guix-environment.sh: Add test for no-cwd. Co-authored-by: Mike Gerwitz <mtg@gnu.org>
2019-07-08scripts: environment: Only rewrite user-specified mappings.Carl Dong
* guix/scripts/environment.scm (launch-environment/container): Only apply override-user-mappings to user-mappings and cwd. Do not apply to network configuration mapping and inputs.
2019-07-08gnu: Remove r-biocinstaller.Tobias Geerinckx-Rice
It requires R < 3.6 and is no longer supported. * gnu/packages/bioinformatics.scm (r-biocinstaller): Define as deprecated in favour of r-biocmanager.
2019-07-08gnu: r-xbioc: Update to 0.1.16-1.6ff0670.Tobias Geerinckx-Rice
This is needed to deprecate r-biocinstaller, which is no longer distributed. * gnu/packages/bioinformatics.scm (r-xbioc): Update to 0.1.16-1.6ff0670. [propagated-inputs]: Replace deprecated r-biocinstaller with r-biocmanager.
2019-07-08gnu: cmh: Fix build.Tobias Geerinckx-Rice
This follows up on commit 1de48e8f8afec23847458c533d2fae0d69d8942a. * gnu/packages/algebra.scm (fplll-4-cmh): New variable. (cmh)[inputs]: Use it.
2019-07-08gnu: libomp: Download over HTTPS.Tobias Geerinckx-Rice
* gnu/packages/llvm.scm (libomp)[source]: Use HTTPS.
2019-07-08gnu: libomp: Fix source hash.Tobias Geerinckx-Rice
This is a follow-up to commit c5296e205b65a9b53553cf45be2ab223d5e82df5, which updated llvm. * gnu/packages/llvm.scm (libomp)[source]: Fix hash.
2019-07-08gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.4.7.Tobias Geerinckx-Rice
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.4.7.
2019-07-08gnu: Add emacs-polymode-org.Joseph LaFreniere
* gnu/packages/emacs-xyz.scm (emacs-polymode-org): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-08gnu: emacs-polymode: Update to 0.2.Joseph LaFreniere
* gnu/packages/emacs-xyz.scm (emacs-polymode): Update to 0.2. [source]: Change URL of Git repository to Polymode GitHub project. [homepage]: Change URL to polymode GitHub project. [description]: Realign text. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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