Age | Commit message (Collapse) | Author |
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* gnu/system.scm (hurd-multiboot-modules): Fix bug reference in
comment.
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Includes fixes for CVE-2023-32205, CVE-2023-32206, CVE-2023-32207,
CVE-2023-32211, CVE-2023-32212, CVE-2023-32213, CVE-2023-32214, and
CVE-2023-32215.
* gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
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* gnu/packages/potassco.scm (python-clinguin): New variable.
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* gnu/packages/python-web.scm (python-fastapi)[arguments]: Remove all custom
phases; ignore two test files.
[propagated-inputs]: Add python-orjson.
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* gnu/packages/python-web.scm (python-fastapi): New variable.
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* gnu/packages/databases.scm (python-databases)[synopsis]: Spell out
“Asynchronous”.
[description]: Mention that it's a wrapper around other libraries using
SQLAlchemy.
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* gnu/packages/databases.scm (python-databases): Update to 0.7.0.
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* gnu/packages/databases.scm (python-aiosqlite): Update to 0.18.0.
[source]: Use git-fetch and git-reference.
[build-system]: Use pyproject-build-system.
[arguments]: Adjust accordingly.
[propagated-inputs]: Remove.
[native-inputs]: Remove python-aiounittest.
Add python-flit-core, python-coverage and python-mypy.
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* gnu/packages/databases.scm (python-aiomysql): Update to 0.1.1.
[build-system]: Change to pyproject-build-system.
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* gnu/packages/databases.scm (python-pymysql): Update to 1.0.2.
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* gnu/packages/databases.scm (python-sqlalchemy)[arguments]: Replace custom
'check phase with #:test-flags.
[build-system]: Use pyproject-build-system.
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* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.4.42.
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* gnu/packages/python-web.scm (python-starlette): Update to 0.25.0.
[source]: Switch to git-fetch and git-reference.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-hatchling, python-httpx, python-pytest, and
python-typing-extensions-next.
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I'm looking at this because I need to do some debugging of Guile's GC, and
there are some useful environment variables for that, but it should be
generally useful.
* gnu/services/guix.scm (guix-build-coordinator-configuration-extra-environment-variables):
New procedure.
(guix-build-coordinator-shepherd-services): Pass the environment variables to
the shepherd.
* doc/guix.texi (Guix Services): Document it.
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* gnu/services.virtualization.scm (%qemu-platforms): Remove %i486,
%aarch64be.
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This reverts commit c56d57110de1412d3529940d4f856611d123da66.
rust-bootstrap *IS* supported on aarch64-linux, and the build farm will
catch up eventually.
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* gnu/packages/bioconductor.scm (r-scran): Update to 1.28.1.
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* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.10.1.
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* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.22.1.
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* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.28.1.
[propagated-inputs]: Add r-s4arrays.
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* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.38.1.
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* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.62.1.
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* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.36.1.
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* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.8.1.
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* gnu/packages/bioconductor.scm (r-dose): Update to 3.26.1.
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* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.24.1.
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* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.74.1.
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* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.8.1.
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* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.12.1.
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* gnu/packages/bioconductor.scm (r-oligo): Update to 1.64.1.
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* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.30.1.
[propagated-inputs]: Add r-s4arrays.
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* gnu/packages/bioconductor.scm (r-scmap): Update to 1.22.1.
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* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.12.1.
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* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 2.26.1.
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* gnu/packages/bioconductor.scm (r-impute): Update to 1.74.1.
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* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.82.1.
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* gnu/packages/bioconductor.scm (r-edger): Update to 3.42.2.
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* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.1.
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* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.34.1.
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* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.62.1.
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* gnu/packages/bioconductor.scm (r-densvis): Update to 1.10.1.
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* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.26.2.
[propagated-inputs]: Add r-s4arrays.
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* gnu/packages/bioconductor.scm (r-bandits): Update to 1.16.1.
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* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.2.
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* gnu/packages/bioconductor.scm (r-amplican): Update to 1.22.1.
[propagated-inputs]: Remove r-clustercrit; add r-cluster.
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* gnu/packages/bioconductor.scm (r-affyplm): Update to 1.76.1.
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* gnu/packages/bioconductor.scm (r-s4arrays): New variable.
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* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-13.
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* gnu/packages/statistics.scm (r-gdata): Update to 2.19.0.
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* gnu/packages/statistics.scm (r-hmisc): Update to 5.1-0.
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