Age | Commit message (Collapse) | Author |
|
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.12.2.
|
|
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.16.2.
|
|
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.12.3.
|
|
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.34.3.
|
|
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.4.2.
|
|
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.12.3.
|
|
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.18.2.
|
|
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.6.2.
|
|
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.66.2.
|
|
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.22.2.
|
|
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.10.2.
|
|
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.8.4.
|
|
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.20.2.
|
|
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.8.1.
|
|
* gnu/packages/bioconductor.scm (r-muscat): Update to 1.12.1.
|
|
* gnu/packages/bioconductor.scm (r-limma): Update to 3.54.2.
|
|
* gnu/packages/bioconductor.scm (r-lfa): Update to 1.28.2.
|
|
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.34.1.
|
|
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.60.2.
|
|
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.14.2.
|
|
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.14.2.
|
|
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.0.8.
|
|
* gnu/packages/bioconductor.scm (r-atena): Update to 1.4.1.
[propagated-inputs]: Add r-matrixstats.
|
|
* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.0.4.
[propagated-inputs]: Add r-cli.
|
|
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.16.1.
[source]: Add snippet to remove bundled minified JavaScript files.
[native-inputs]: Add esbuild, js-bootstrap, js-d3, js-jquery, and
js-underscore.
[arguments]: Add build phase 'process-javascript.
|
|
* gnu/packages/bioconductor.scm (r-mast): Update to 1.24.1.
[source]: Delete minified JavaScript.
[arguments]: Add build phase 'process-javascript.
[native-inputs]: Add esbuild and js-jquery-sticky-kit.
|
|
* gnu/packages/lisp-xyz.scm (sbcl-nclasses): Update to 0.3.0.
|
|
* gnu/packages/wm.scm (sbcl-stumpwm-hostname): New variable.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
|
|
* gnu/packages/lisp-xyz.scm (sbcl-mcclim)[source]: Update source url.
[home-page]: Update project home page.
Signed-off-by: Andreas Enge <andreas@enge.fr>
|
|
* gnu/packages/diffoscope.scm (reprotest): Update to 0.7.23.
[phases] Update adjust-locales.
|
|
* gnu/packages/diffoscope.scm (diffoscope): Update to 238.
[native-inputs]: Switch from poppler to poppler-next.
|
|
* gnu/packages/emacs-xyz.scm (emacs-org-modern): Update to 0.9.
|
|
* gnu/packages/bioinformatics.scm (r-rhandsontable): Move this variable from
here...
* gnu/packages/cran.scm (r-rhandsontable): ...to here.
|
|
* gnu/packages/bioinformatics.scm (r-premessa): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
|
|
Includes fixes for CVE-2023-25751, CVE-2023-25752, CVE-2023-28162,
CVE-2023-28163, CVE-2023-28164, and CVE-2023-28176.
* gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
|
|
* gnu/packages/bioinformatics.scm (r-rhandsontable): New variable.
Co-authored-by: Navid Afkhami <navid.afkhami@mdc-berlin.de>
|
|
* gnu/packages/cran.scm (r-tidyverse): Update to 2.0.0.
[propagated-inputs]: Remove r-crayon; add r-conflicted and r-ragg.
|
|
* gnu/packages/engineering.scm (pcb-rnd): Update to 3.1.0.
[inputs]: Add librnd.
[arguments]: Use gexp; set LIBRND_PREFIX.
|
|
* gnu/packages/engineering.scm (librnd): New variable.
|
|
* gnu/packages/engineering.scm (pcb)[inputs]: Remove eudev as it is no longer
necessary to add it for mesa.
|
|
* gnu/packages/engineering.scm (pcb)[inputs, native-inputs]: Remove package
labels.
|
|
* gnu/packages/engineering.scm (pcb): Update to 4.3.0.
[arguments]: Remove obsolete build phases.
|
|
* gnu/packages/engineering.scm (pcb)[arguments]: Use gexp and drop trailing #T
from build phases.
|
|
* gnu/packages/engineering.scm (lepton-eda): Move arguments above inputs, and
reformat source field.
|
|
* gnu/packages/engineering.scm (lepton-eda)[arguments]: Use gexp.
|
|
* gnu/packages/engineering.scm (lepton-eda)[native-inputs, inputs]: Do not use
redundant package labels.
|
|
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-73.7c1eedf.
|
|
* gnu/packages/ruby.scm (mruby): Update to 3.2.0.
[arguments]: Remove unnecessary substitutions in the 'disable-broken-tests
phase.
[description]: Update.
Signed-off-by: Christopher Baines <mail@cbaines.net>
|
|
* gnu/packages/python-xyz.scm (autokey): Update to 0.96.0.
[source]: Patch tests.
[arguments]: Enable tests. Prefer PATH over substitute* in phase 'fix-paths.
Add phase 'setup-env-vars. Rename 'wrap-autokey-gi to 'wrap-autokey and set PATH.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-pytest, python-pytest-cov and python-pyhamcrest.
Signed-off-by: Christopher Baines <mail@cbaines.net>
|
|
* gnu/packages/ocr.scm (tesseract-ocr): Update to 5.3.0.
Signed-off-by: Christopher Baines <mail@cbaines.net>
|