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2020-04-15gnu: Git: Update to 2.26.1 [fixes CVE-2020-5260].Leo Famulari
* gnu/packages/version-control.scm (git): Update to 2.26.1. [native-inputs]: Update git-manpages.
2020-04-15Update NEWS.v1.1.0Ludovic Courtès
2020-04-15services: shepherd: Increase the PID file timeout to 30s.Ludovic Courtès
When running the installation image off a DVD, early I/O operations are extremely slow, to the point that something like dbus-daemon would need ~20s to start. This change works around the issue. Fixes <https://bugs.gnu.org/40572>. Reported by Florian Pelz <pelzflorian@pelzflorian.de>. * gnu/services/shepherd.scm (shepherd-configuration-file): Set %pid-file-timeout to 30.
2020-04-14gnu: emacs-helm-ag: Update to 0.59.Michael Rohleder
* gnu/packages/emacs-xyz.scm (emacs-helm-ag): Update to 0.59.
2020-04-14gnu: cook: Fix test failure.Marius Bakke
* gnu/packages/cook.scm (cook)[arguments]: Override LC_ALL for one test.
2020-04-14gnu: python-pyrsistent: Update to 0.16.0.Marius Bakke
* gnu/packages/python-xyz.scm (python-pyrsistent): Update to 0.16.0.
2020-04-14gnu: python-gssapi: Update to 1.6.5.Marius Bakke
* gnu/packages/python-xyz.scm (python-gssapi): Update to 1.6.5.
2020-04-14gnu: python-parso: Update to 0.7.0.Marius Bakke
* gnu/packages/python-xyz.scm (python-parso): Update to 0.7.0.
2020-04-14gnu: mksh: Update to 58.Tobias Geerinckx-Rice
* gnu/packages/shells.scm (mksh): Update to 58.
2020-04-14gnu: txr: Update to 235.Tobias Geerinckx-Rice
* gnu/packages/lisp.scm (txr): Update to 235. [arguments]: Cosmetic shortening.
2020-04-14gnu: txr: Call ./configure manually instead of patching.Tobias Geerinckx-Rice
* gnu/packages/lisp.scm (txr)[source]: Remove patch. [arguments]: Add ‘--prefix’ to #:configure-flags. Use a custom ‘configure’ phase. * gnu/packages/patches/txr-shell.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-04-14gnu: txr: Declare test target.Tobias Geerinckx-Rice
* gnu/packages/lisp.scm (txr)[arguments]: Use #:test-target instead of a trivial custom ‘check’ phase.
2020-04-14gnu: i2pd: Update to 2.31.0.Tobias Geerinckx-Rice
* gnu/packages/i2p.scm (i2pd): Update to 2.31.0.
2020-04-14gnu: strongswan: Update to 5.8.4.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (strongswan): Update to 5.8.4.
2020-04-14doc: Fix typo.Brice Waegeneire
* doc/guix.texi (Web Services)[nginx-php-fpm-location]: Replace 'nginx-php-fpm-location' by 'nginx-php-location'. Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-04-14gnu: python-podcastparser: Update to 0.6.5.Tobias Geerinckx-Rice
* gnu/packages/gpodder.scm (python-podcastparser): Update to 0.6.5.
2020-04-14gnu: man-pages: Update to 5.06.Tobias Geerinckx-Rice
* gnu/packages/man.scm (man-pages): Update to 5.06.
2020-04-14gnu: x265: Update to 3.3.Tobias Geerinckx-Rice
* gnu/packages/video.scm (x265): Update to 3.3.
2020-04-14gnu: r-glue: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-glue): Update to 1.4.0. [native-inputs]: Add commment explaining why r-knitr is not an input.
2020-04-14gnu: r-rcpparmadillo: Update to 0.9.860.2.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.860.2.0. [native-inputs]: Remove r-knitr, r-rmarkdown, ghc-pandoc, and ghc-pandoc-citeproc.
2020-04-14gnu: r-atacseqqc: Update to 1.10.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.4.
2020-04-14gnu: r-a4base: Update to 1.34.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.1.
2020-04-14gnu: r-varianttools: Update to 1.28.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.1.
2020-04-14gnu: r-genomicinteractions: Update to 1.20.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.3.
2020-04-14gnu: r-delayedarray: Update to 0.12.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.3. [native-inputs]: Add r-knitr.
2020-04-14gnu: r-s4vectors: Update to 0.24.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.24.4.
2020-04-14gnu: r-httpcode: Update to 0.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-httpcode): Update to 0.3.0.
2020-04-14gnu: r-isoband: Update to 0.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-isoband): Update to 0.2.1. [native-inputs]: Add r-knitr.
2020-04-14gnu: r-anthropometry: Update to 1.14.Ricardo Wurmus
* gnu/packages/cran.scm (r-anthropometry): Update to 1.14. [native-inputs]: Add r-knitr.
2020-04-14gnu: r-lhs: Update to 1.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-lhs): Update to 1.0.2. [native-inputs]: Add r-knitr.
2020-04-14gnu: r-txtplot: Update to 1.0-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-txtplot): Update to 1.0-4.
2020-04-14gnu: r-parameters: Update to 0.6.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-parameters): Update to 0.6.1.
2020-04-14gnu: r-sf: Update to 0.9-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-sf): Update to 0.9-1.
2020-04-14gnu: r-spdata: Update to 0.3.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-spdata): Update to 0.3.5.
2020-04-14gnu: r-classint: Update to 0.4-3.Ricardo Wurmus
* gnu/packages/cran.scm (r-classint): Update to 0.4-3. [native-inputs]: Add r-knitr.
2020-04-14gnu: r-lemon: Update to 0.4.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-lemon): Update to 0.4.4. [propagated-inputs]: Add r-rlang.
2020-04-14gnu: r-compositions: Update to 1.40-5.Ricardo Wurmus
* gnu/packages/cran.scm (r-compositions): Update to 1.40-5.
2020-04-14gnu: r-lmertest: Update to 3.1-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-lmertest): Update to 3.1-2.
2020-04-14gnu: r-usethis: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-usethis): Update to 1.6.0. [propagated-inputs]: Remove r-clisymbols; add r-cli and r-rematch2.
2020-04-14gnu: r-fs: Update to 1.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-fs): Update to 1.4.1.
2020-04-14gnu: r-effectsize: Update to 0.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-effectsize): Update to 0.3.0. [native-inputs]: Add r-knitr.
2020-04-14gnu: r-multcomp: Update to 1.4-13.Ricardo Wurmus
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-13.
2020-04-14gnu: r-survey: Update to 4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-survey): Update to 4.0.
2020-04-14gnu: r-sjmisc: Update to 2.8.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.4. [native-inputs]: Add r-knitr.
2020-04-14gnu: r-arules: Update to 1.6-5.Ricardo Wurmus
* gnu/packages/cran.scm (r-arules): Update to 1.6-5.
2020-04-14gnu: r-xfun: Update to 0.13.Ricardo Wurmus
* gnu/packages/cran.scm (r-xfun): Update to 0.13. [native-inputs]: Add comment about not adding r-knitr.
2020-04-14gnu: r-rcpp: Update to 1.0.4.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.4.6.
2020-04-14gnu: r-lubridate: Update to 1.7.8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.8. [propagated-inputs]: Remove r-stringr; add r-generics. [native-inputs]: Add r-knitr.
2020-04-14gnu: r-cairo: Update to 1.5-12.Ricardo Wurmus
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-12.
2020-04-14gnu: r-lme4: Update to 1.1-23.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-23. [native-inputs]: Add r-knitr. [propagated-inputs]: Add r-statmod.
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