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2016-01-16emacs: Find packages in system profiles.Alex Kost
For a usual profile, packages are placed in a profile directory itself, but for a system profile, packages are placed in 'profile' sub-directory. So we need to do some special cases for system profiles to find packages there as well. * emacs/guix-base.el (guix-packages-profile): New procedure. (guix-manifest-file): Use it. Add optional 'system?' argument. * emacs/guix-ui-generation.el (guix-system-generation?) (guix-generation-current-packages-profile): New procedures. (guix-generation-packages, guix-generation-insert-packages): Remove 'generation' argument. (guix-generation-packages-buffer): Add optional 'system?' argument. (guix-profile-generation-manifest-file) (guix-profile-generation-packages-buffer): Adjust accordingly. * emacs/guix-main.scm (generation-package-specifications+paths): Rename to... (profile->specifications+paths): ... this. Use a single 'profile' argument.
2016-01-16emacs: profiles: Add 'guix-system-profile'.Alex Kost
* emacs/guix-profiles.el (guix-system-profile): New variable.
2016-01-16Move <boot-parameters> to (gnu system).Alex Kost
* guix/scripts/system.scm (previous-grub-entries) (display-system-generation): Use accessors instead of matching <boot-parameters>. (boot-parameters, boot-parameters?, boot-parameters-label) (boot-parameters-root-device, boot-parameters-kernel) (boot-parameters-kernel-arguments, read-boot-parameters): Move to... * gnu/system.scm: ... here. Export them.
2016-01-16gnu: Add python-hy.宋文武
* gnu/packages/python.scm (python-hy, python2-hy): New variables.
2016-01-16gnu: Add python-rply.宋文武
* gnu/packages/python.scm (python-rply, python2-rply): New variables.
2016-01-16gnu: Add python-astor.宋文武
* gnu/packages/python.scm (python-astor, python2-astor): New variables.
2016-01-16gnu: Add python-clint.宋文武
* gnu/packages/python.scm (python-clint, python2-clint): New variables.
2016-01-16gnu: Add python-args.宋文武
* gnu/packages.scm (python-args, python2-args): New variables.
2016-01-15gnu: Add khal.Leo Famulari
* gnu/packages/calendar.scm (khal): New variable.
2016-01-15gnu: python-urwid: Disable failing test test_remove_watch_file.Leo Famulari
* gnu/packages/python.scm (python-urwid)[arguments]: Add 'disable-failing-test' phase. [source]: Use pypi-uri.
2016-01-15gnu: Update python-tzlocal to 1.2.Leo Famulari
* gnu/packages/python.scm (python-tzlocal): Update to 1.2. [source]: Use pypi-uri. [arguments]: Remove the custom 'unpack phase. [native-inputs]: Remove unzip, python-setuptools. [propagated-inputs]: Add python-pytz.
2016-01-15gnu: Add python-sphinxcontrib-newsfeed.Leo Famulari
* gnu/packages/python.scm (python-sphinxcontrib-newsfeed): New variable.
2016-01-15gnu: Add python-icalendar.Leo Famulari
* gnu/packages/python.scm (python-icalendar): New variable.
2016-01-15gnu: Add vdirsyncer.Leo Famulari
* gnu/packages/dav.scm (vdirsyncer): New variable.
2016-01-15gnu: Add radicale.Leo Famulari
* gnu/packages/dav.scm (radicale): New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2016-01-15gnu: Add python-pytest-xprocess.Leo Famulari
* gnu/packages/python.scm (python-pytest-xprocess): New variable.
2016-01-15gnu: Add python-wsgi-intercept.Leo Famulari
* gnu/packages/python.scm (python-wsgi-intercept): New variable.
2016-01-15gnu: Add python-pytest-localserver.Leo Famulari
* gnu/packages/python.scm (python-pytest-localserver): New variable.
2016-01-15gnu: Add python-pytest-cache.Leo Famulari
* gnu/packages/python.scm (python-pytest-cache): New variable.
2016-01-15gnu: Add python-execnet.Leo Famulari
* gnu/packages/python.scm (python-execnet): New variable.
2016-01-15gnu: Add python-apipkg.Leo Famulari
* gnu/packages/python.scm (python-apipkg): New variable.
2016-01-15gnu: Add python-click-log.Leo Famulari
* gnu/packages/python.scm (python-click-log): New variable.
2016-01-15gnu: Add python-click-threading.Leo Famulari
* gnu/packages/python.scm (python-click-threading): New variable.
2016-01-15gnu: Add python-requests-toolbelt.Leo Famulari
* gnu/packages/python.scm (python-requests-toolbelt): New variable.
2016-01-15gnu: Add python-atomicwrites.Leo Famulari
* gnu/packages/python.scm (python-atomicwrites): New variable.
2016-01-15gnu: glade: Update to 3.18.5.Ricardo Wurmus
* gnu/packages/gnome.scm (glade): Update to 3.18.5. [arguments]: Disable tests; add "fix-docbook" phase. [inputs]: Replace "gtk+-2" with "gtk+". [native-inputs]: Add "itstool", "libxslt", "docbook-xml", "docbook-xsl"; replace "python" with "python-2".
2016-01-15gnu: openssh: Update to 7.1p2.Mark H Weaver
* gnu/packages/ssh.scm (openssh): Update to 7.1p2.
2016-01-15Revert "gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778]."Mark H Weaver
This reverts commit 6d139e53b596ca154800d154b37fcd22741c629c.
2016-01-14gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778].Mark H Weaver
* gnu/packages/ssh.scm (openssh): Update to 7.1p2.
2016-01-14gnu: Add docker-compose.David Thompson
* gnu/packages/docker.scm (docker-compose): New variable.
2016-01-14gnu: Add python-dockerpty.David Thompson
* gnu/packages/docker.scm (python-dockerpty): New variable.
2016-01-14gnu: Add python-docker-py.David Thompson
* gnu/packages/docker.scm: New file. * Makefile.am (GNU_SYSTEM_MODULES): Add it.
2016-01-14gnu: Add python-websocket-client.David Thompson
* gnu/packages/python.scm (python-websocket-client): New variable.
2016-01-14gnu: Add python-texttable.David Thompson
* gnu/packages/python.scm (python-texttable, python2-texttable): New variables.
2016-01-14gnu: Update python-jsonschema to 2.5.1.David Thompson
* gnu/packages/python.scm (python-jsonschema): Update to 2.5.1. [inputs]: Add python-vcversioner.
2016-01-14gnu: Add python-vcversioner.David Thompson
* gnu/packages/python.scm (python-vcversioner, python2-vcversioner): New variables.
2016-01-14gnu: Add version 2.7 variant of python-requests.David Thompson
* gnu/packages/python.scm (python-requests-2.7): New variable.
2016-01-14gnu: r-go-db: Add missing input.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-go-db)[propagated-inputs]: Add "r-annotationdbi".
2016-01-14gnu: r-sparsem: Add missing "gfortran" input.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sparsem)[inputs]: Add "gfortran".
2016-01-14gnu: bowtie: Update to 2.2.6.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6. [source]: Remove patch; do not set CC and CPP variables. [inputs]: Add "tbb". [arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom "install" phase. * gnu/packages/patches/bowtie-fix-makefile.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove patch file.
2016-01-14gnu: gnupg: Add TOFU support.Efraim Flashner
* gnu/packages/gnupg.scm (gnupg)[inputs]: Add sqlite.
2016-01-14import: gem: Beautify description field.Ben Woodcroft
* guix/import/gem.scm (gem->guix-package): Use 'beautify-description'.
2016-01-14import: cran: Move beautify-description to utils module.Ben Woodcroft
* guix/import/cran.scm (beautify-description): Move from here... * guix/import/utils.scm: ... to here.
2016-01-14emacs: Fix heading face in "Package Info".Alex Kost
Reported by Ludovic Courtès <ludo@gnu.org> on #guix. This fixes a regression introduced in commit 7171d824. 'insert-text-button' procedure does not allow to override a button face, so a specialized button type should be used instead. * emacs/guix-ui-package.el (guix-package-heading): New button type. (guix-package-info-insert-heading): Use it.
2016-01-14gnu: orfm: Update to 0.5.3.Ben Woodcroft
* gnu/packages/bioinformatics.scm (orfm): Update to 0.5.3. [native-inputs]: Add inputs required for tests. [description]: Add commas.
2016-01-14gnu: Add ruby-bio-commandeer.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-bio-commandeer): New variable.
2016-01-14gnu: Add ruby-systemu.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-systemu): New variable.
2016-01-13hydra: Add missing phase and inputs for 'make dist' job.Ludovic Courtès
* build-aux/hydra/guix.scm (tarball-package): Inherit from 'guix-devel' rather than 'guix'. Pass #:phases to 'dist-package'.
2016-01-13build-system/gnu: 'dist-package' can be passed the phases.Ludovic Courtès
* guix/build-system/gnu.scm (dist-package): Add #:phases parameter and honor it.
2016-01-13monad-repl: Close connection when leaving the monad REPL.Ludovic Courtès
* guix/monad-repl.scm (store-monad-language): Add 'store' parameter and use it. Remove call to 'open-connection'. (enter-store-monad): Use 'with-store' and pass the store to 'store-monad-language.
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