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2018-06-06tests: Adjust 'guix package' test to "python2" name.Ludovic Courtès
This is a followup to a7714d42de2c3082f3609d1e63c83d703fb39cf9, which renamed Python 2.x to "python2". * tests/guix-package.sh: Use g-wrap and guile@2.0 when testing collisions.
2018-06-06tests: Adjust graph test.Ludovic Courtès
This is a followup to 301a4249064227bc4883e4e5b638e85a65925ba0, which added a dependency to sed. * tests/graph.scm ("node-edges"): Use 'hello', not 'sed', as the example of a package without any dependency.
2018-06-06gnu: vigra: Disable broken test.Ricardo Wurmus
* gnu/packages/image.scm (vigra)[arguments]: Add phase "disable-broken-test"; enable parallel build.
2018-06-06gnu: esmtp: Replace 'bootstrap phase.Efraim Flashner
* gnu/packages/mail.scm (esmtp)[arguments]: Use custom 'autoconf phase to replace default 'bootstrap phase.
2018-06-06gnu: can-utils: Remove 'bootstrap phase.Efraim Flashner
* gnu/packages/networking.scm (can-utils)[arguments]: Remove unnecessary 'bootstrap phase.
2018-06-05Merge branch 'master' into core-updatesRicardo Wurmus
2018-06-05gnu: qtractor: Update to 0.9.1.Ricardo Wurmus
* gnu/packages/music.scm (qtractor): Update to 0.9.1. [arguments]: Add phase "fix-build-with-qt-5.11".
2018-06-05gnu: linux-libre: Update to 4.17.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17. (%linux-libre-hash): Update hash. * gnu/packages/aux-files/linux-libre/4.16-arm.conf, gnu/packages/aux-files/linux-libre/4.16-arm64.conf, gnu/packages/aux-files/linux-libre/4.16-i686.conf, gnu/packages/aux-files/linux-libre/4.16-x86_64.conf: Delete files. * gnu/packages/aux-files/linux-libre/4.17-arm.conf, gnu/packages/aux-files/linux-libre/4.17-arm64.conf, gnu/packages/aux-files/linux-libre/4.17-i686.conf, gnu/packages/aux-files/linux-libre/4.17-x86_64.conf: New files. * Makefile.am (AUX_FILES): Adjust accordingly.
2018-06-05gnu: linux-libre@4.14: Update to 4.14.48.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.48. (%linux-libre-4.14-hash): Update hash.
2018-06-05gnu: linux-libre@4.9: Update to 4.9.106.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.106.
2018-06-05gnu: yoshimi: Update to 1.5.8.Ricardo Wurmus
* gnu/packages/music.scm (yoshimi): Update to 1.5.8.
2018-06-05gnu: freedoom: Fix compilation.Efraim Flashner
* gnu/packages/games.scm (freedoom)[arguments]: Remove 'bootstrap phase.
2018-06-05gnu: arc-theme: Replace bootstrap phase.Efraim Flashner
* gnu/packages/gmome.scm (arc-theme)[arguments]: Replace 'boostrap phase with a custom phase.
2018-06-05gnu: tilda: Replace bootstrap phase.Efraim Flashner
* gnu/packages/terminals.scm (tilda)[arguments]: Remove custom 'bootstrap phase and use it to replace default bootstrap phase.
2018-06-05gnu: Add sjcount.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (sjcount): New variable.
2018-06-05services: Add dnsmasq-service-type.宋文武
* gnu/services/dns.scm (dnsmasq-service-type): New variable. (<dnsmasq-configuration>): New record type. (dnsmasq-shepherd-service): New procedure. * doc/guix.texi (DNS Services): Document it.
2018-06-05gnu: Remove duplicate definition of r-heatmaply.Ricardo Wurmus
* gnu/packages/cran.scm (r-heatmaply): Remove duplicate.
2018-06-05gnu: Remove duplicate definition of r-heatmaply.Ricardo Wurmus
* gnu/packages/cran.scm (r-heatmaply): Remove duplicate.
2018-06-05gnu: r-heatmaply: Add r-knitr.Ricardo Wurmus
* gnu/packages/cran.scm (r-heatmaply)[propagated-inputs]: Add r-knitr.
2018-06-05gnu: r-heatmaply: Add r-knitr.Ricardo Wurmus
* gnu/packages/cran.scm (r-heatmaply)[propagated-inputs]: Add r-knitr.
2018-06-05gnu: dropseq-tools: Remove failing phase.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (dropseq-tools)[arguments]: Delete "generate-jar-indices" phase.
2018-06-05gnu: java-bouncycastle: Disable tests.Ricardo Wurmus
* gnu/packages/java.scm (java-bouncycastle)[arguments]: Disable tests.
2018-06-05gnu: pigx-scrnaseq: Use only one variant of Picard.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace "java-picard" with "java-picard-2.10.3".
2018-06-05gnu: java-picard: Delete failing build phase.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (java-picard)[arguments]: Delete "generate-jar-indices" phase.
2018-06-05gnu: java-cisd-jhdf5: Delete failing build phase.Ricardo Wurmus
* gnu/packages/java.scm (java-cisd-jhdf5)[arguments]: Delete build phase "generate-jar-indices".
2018-06-05gnu: java-picard-1.113: Delete failing build phase.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (java-picard-1.113)[arguments]: Delete "generate-jar-indices" build phase.
2018-06-05gnu: java-picard-2.10.3: Delete failing build phase.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (java-picard-2.10.3)[arguments]: Delete generate-jar-indices phase.
2018-06-05Merge branch 'master' into core-updatesRicardo Wurmus
2018-06-05gnu: r-rtracklayer: Update to 1.40.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.40.3.
2018-06-05gnu: r-ranger: Update to 0.10.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ranger): Update to 0.10.1.
2018-06-05gnu: r-np: Update to 0.60-8.Ricardo Wurmus
* gnu/packages/cran.scm (r-np): Update to 0.60-8.
2018-06-05gnu: t-series: Update to 0.10-45.Ricardo Wurmus
* gnu/packages/cran.scm (t-series): Update to 0.10-45.
2018-06-05gnu: r-ksamples: Update to 1.2-8.Ricardo Wurmus
* gnu/packages/cran.scm (r-ksamples): Update to 1.2-8.
2018-06-05gnu: r-methylkit: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.1.
2018-06-05gnu: r-bamsignals: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.12.1.
2018-06-05Merge branch 'master' into core-updatesRicardo Wurmus
2018-06-05build-system/r: Update to Bioconductor 3.7.Ricardo Wurmus
This is a follow-up to 41f17554d88795bf35fbfc3e05301a6d2f64cca0. * guix/build-system/r.scm (bioconductor-uri): Update to version 3.7.
2018-06-05gnu: p11-kit: Update to 0.23.12.Tobias Geerinckx-Rice
* gnu/packages/tls.scm (p11-kit): Update to 0.23.12.
2018-06-04gnu: elfutils: Disable test suite on MIPS.Mark H Weaver
* gnu/packages/elf.scm (elfutils)[arguments]: Add (#:tests? #f) on MIPS.
2018-06-05gnu: beets: Return #t from phases.Tobias Geerinckx-Rice
* gnu/packages/music.scm (beets)[arguments]: Substitute INVOKE for SYSTEM* and return #t from all phases.
2018-06-05gnu: nano: Update to 2.9.8.Tobias Geerinckx-Rice
* gnu/packages/nano.scm (nano): Update to 2.9.8.
2018-06-05gnu: python-pycurl: Update to 7.43.0.2.Tobias Geerinckx-Rice
* gnu/packages/python-web.scm (python-pycurl): Update to 7.43.0.2.
2018-06-05gnu: fvwm: Update to 2.6.8.Tobias Geerinckx-Rice
* gnu/packages/fvwm.scm (fvwm): Update to 2.6.8.
2018-06-05gnu: perl-parse-yapp: Update to 1.21.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-parse-yapp): Update to 1.21.
2018-06-05gnu: perl-text-balanced: Update to 2.03.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-text-balanced): Update to 2.03. [source]: Update URI.
2018-06-05gnu: perl-posix-strftime-compiler: Update to 0.42.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-posix-strftime-compiler): Update to 0.42.
2018-06-05gnu: perl-moosex-methodattributes: Update to 0.31.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-moosex-methodattributes): Update to 0.31.
2018-06-05gnu: perl-module-install: Update to 1.19.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-module-install): Update to 1.19. [source]: Update URI.
2018-06-05gnu: perl-memoize-expirelru: Update to 0.56.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-memoize-expirelru): Update to 0.56. [source]: Update URI.
2018-06-04gnu: ccid, pcsc-lite: Move away from alioth.debian.org.Tobias Geerinckx-Rice
* gnu/packages/security-token.scm (ccid, pcsc-lite)[source, home-page]: Update upstream URI.
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