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2018-06-01services: Add hpcguix-web.Rouby Pierre-Antoine
* gnu/service/web.scm (<hpcguix-web-configuration>): New record-type. (%hpcguix-web-accounts): New variable. (%hpcguix-web-activation,hpcguix-web-shepherd-service, hpcguix-web-service-type): New procedures. * gnu/tests/web.scm (run-hpcguix-web-server-test): New procedure. (%hpcguix-web-specs, %hpcguix-web-os, %test-hpcguix-web): New variable. * doc/guix.texi (Web Services): Add 'hpcguix-web'. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01gnu: Add hpcguix-web.Rouby Pierre-Antoine
* gnu/package/web.scm (hpcguix-web): New variable. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-06-01marionette: Add 'wait-for-tcp-port'.Ludovic Courtès
* gnu/build/marionette.scm (wait-for-tcp-port): New procedure. * gnu/tests/dict.scm (run-dicod-test)["connect inside"]: Use it instead of the inline loop.
2018-06-01gnu: emacs-w3m: Update and allow builds with Emacs 26.Ludovic Courtès
* gnu/packages/emacs.scm (emacs-w3m)[source]: Grab the source from github.com. [native-inputs]: Add TEXINFO. [arguments]: Add 'support-emacs!' phase. In 'patch-exec-paths' phase, make w3m.el and w3m-image.el writable. Remove substitution for 'w3m-image-viewer', which no longer exists.
2018-06-01gnu: sddm: Fix CMake build.Stefan Stefanović
* gnu/packages/display-managers.scm (sddm): Fix CMake build. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch: New file. Signed-off-by: Rutger Helling <rhelling@mykolab.com>
2018-06-01scripts: system: Sort profile generations in reverse order.Mathieu Othacehe
* guix/scripts/system.scm (profile-boot-parameters): Reverse generation-numbers list. This allows old generations to be listed from most recent to oldest in bootloaders configuration files.
2018-05-31gnu: prosody: Update to 0.10.2 [fixes CVE-2018-10847].Leo Famulari
* gnu/packages/messaging.scm (prosody): Update to 0.10.2.
2018-05-31gnu: Add emacs-zotxt.Konrad Hinsen
* gnu/packages/emacs.scm (emacs-zotxt): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31gnu: Add emacs-org-caldav.Konrad Hinsen
* gnu/packages/emacs.scm (emacs-org-caldav): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31gnu: Add python-bigfloat.Konrad Hinsen
* gnu/packages/python.scm (python-bigfloat, python2-bigfloat): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31gnu: bear: Fix python path.Fis Trivial
* gnu/packages/build-tools.scm (bear) [inputs]: Add python-wrapper. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31records: Make a couple of procedures available at expansion time.Ludovic Courtès
* guix/records.scm (current-abi-identifier, abi-check): Wrap in 'eval-when'.
2018-05-31system: 'read-boot-parameters' provides a more meaningful warning.Ludovic Courtès
'system' here was bound to Guile's 'system' procedure. * gnu/system.scm (read-boot-parameters): Fix argument for fallback warning.
2018-05-31file-systems: Always wait for devices to show up.Ludovic Courtès
Previously, 'canonicalize-device-spec' would wait for devices when they were specified as a label or UUID, but would not wait when the user passed a "/dev" file name directly. This could cause problems when the /dev node takes a while to show up. * gnu/build/file-systems.scm (canonicalize-device-spec): Add 'resolve' call in the 'string?' case.
2018-05-31self: Reduce the set of dependencies.Ludovic Courtès
By mistake we were adding more dependencies than needed to the Scheme derivations. * guix/self.scm (compiled-guix)[dependencies]: Use 'package-transitive-propagated-inputs', not 'package-transitive-inputs'.
2018-05-31gnu: r-servr: Update to 0.10.Ricardo Wurmus
* gnu/packages/web.scm (r-servr): Update to 0.10. [native-inputs]: Remove r-rcpp.
2018-05-31gnu: r-seurat: Update to 2.3.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.1. [propagated-inputs]: Remove r-gridextra; add r-reticulate.
2018-05-31gnu: r-shiny: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/web.scm (r-shiny): Update to 1.1.0. [source]: Fetch from git. [propagated-inputs]: Add r-crayon.
2018-05-31gnu: r-rjson: Update to 0.2.19.Ricardo Wurmus
* gnu/packages/web.scm (r-rjson): Update to 0.2.19.
2018-05-31gnu: r-htmltable: Update to 1.12.Ricardo Wurmus
* gnu/packages/web.scm (r-htmltable): Update to 1.12.
2018-05-31gnu: r-directlabels: Update to 2018.05.22.Ricardo Wurmus
* gnu/packages/statistics.scm (r-directlabels): Update to 2018.05.22.
2018-05-31gnu: r-ranger: Update to 0.10.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ranger): Update to 0.10.0.
2018-05-31gnu: r-tclust: Update to 1.4-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tclust): Update to 1.4-1.
2018-05-31gnu: r-caret: Update to 6.0-80.Ricardo Wurmus
* gnu/packages/statistics.scm (r-caret): Update to 6.0-80.
2018-05-31gnu: r-quantreg: Update to 5.36.Ricardo Wurmus
* gnu/packages/statistics.scm (r-quantreg): Update to 5.36.
2018-05-31gnu: r-rrcov: Update to 1.4-4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rrcov): Update to 1.4-4.
2018-05-31gnu: r-ggthemes: Update to 3.5.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ggthemes): Update to 3.5.0.
2018-05-31gnu: r-runit: Update to 0.4.32.Ricardo Wurmus
* gnu/packages/statistics.scm (r-runit): Update to 0.4.32.
2018-05-31gnu: r-purrr: Update to 0.2.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.5.
2018-05-31gnu: r-tidyr: Update to 0.8.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.1.
2018-05-31gnu: r-synchronicity: Update to 1.3.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-synchronicity): Update to 1.3.4.
2018-05-31gnu: r-rngtools: Update to 1.3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rngtools): Update to 1.3.1.
2018-05-31gnu: r-pkgmaker: Update to 0.27.Ricardo Wurmus
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.27. [propagated-inputs]: Add r-bibtex, r-magrittr, r-stringi, and r-withr.
2018-05-31gnu: r-lambda-r: Update to 1.2.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.3.
2018-05-31gnu: r-plotrix: Update to 3.7-2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-2.
2018-05-31gnu: r-data-table: Update to 1.11.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-data-table): Update to 1.11.4.
2018-05-31gnu: r-rlang: Update to 0.2.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rlang): Update to 0.2.1.
2018-05-31gnu: r-knitrbootstrap: Update to 1.0.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.2. [propagated-inputs]: Add r-markdown.
2018-05-31gnu: r-pheatmap: Update to 1.0.10.Ricardo Wurmus
* gnu/packages/statistics.scm (r-pheatmap): Update to 1.0.10.
2018-05-31gnu: r-bit: Update to 1.1-14.Ricardo Wurmus
* gnu/packages/statistics.scm (r-bit): Update to 1.1-14.
2018-05-31gnu: r-kernlab: Update to 0.9-26.Ricardo Wurmus
* gnu/packages/machine-learning.scm (r-kernlab): Update to 0.9-26.
2018-05-31gnu: r-rmysql: Update to 0.10.15.Ricardo Wurmus
* gnu/packages/databases.scm (r-rmysql): Update to 0.10.15.
2018-05-31gnu: r-mice: Update to 3.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-mice): Update to 3.0.0. [propagated-inputs]: Add r-broom, r-dplyr, r-mitml, and r-rlang.
2018-05-31gnu: r-callr: Update to 2.0.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-callr): Update to 2.0.4. [propagated-inputs]: Add r-processx; remove r-assertthat, r-crayon, r-debugme, and r-testthat.
2018-05-31gnu: r-openxlsx: Update to 4.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.0. [propagated-inputs]: Add r-zip.
2018-05-31gnu: r-shinyace: Update to 0.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.1. [propagated-inputs]: Add r-jsonlite.
2018-05-31gnu: r-processx: Update to 3.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-processx): Update to 3.1.0. [propagated-inputs]: Remove r-debugme; add r-testthat.
2018-05-31gnu: r-ggally: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggally): Update to 1.4.0. [inputs]: Add libressl. [propagated-inputs]: Add r-rlang.
2018-05-31gnu: r-psych: Update to 1.8.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-psych): Update to 1.8.4.
2018-05-31gnu: r-pillar: Update to 1.2.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-pillar): Update to 1.2.3.
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