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2016-06-29gnu: avrdude: Use libusb-compat.Ricardo Wurmus
* gnu/packages/patches/avrdude-fix-libusb.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/flashing-tools.scm (avrdude)[source]: Remove patch. [inputs]: Replace "libusb" with "libusb-compat".
2016-06-29gnu: star: Update to 2.5.2a.Ben Woodcroft
* gnu/packages/bioinformatics.scm (star): Update to 2.5.2a.
2016-06-29gnu: htslib: Update to 1.3.1.Ben Woodcroft
* gnu/packages/bioinformatics.scm (htslib): Update to 1.3.1.
2016-06-28gnu: Add SEEK.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (seek): New variable.
2016-06-28gnu: mafft: Update to 7.299.Ben Woodcroft
* gnu/packages/bioinformatics.scm (mafft): Update to 7.299.
2016-06-28Revert "gnu: qtbase: Don't propagate mesa."Efraim Flashner
This reverts commit 763a8e6e235cf464306214349dad21979f2645f0.
2016-06-28gnu: metabat: Update to 0.26.3.Ben Woodcroft
* gnu/packages/bioinformatics.scm (metabat): Update to 0.26.3. [arguments]: Update include and linking paths accordingly.
2016-06-28gnu: diamond: Update to 0.8.9.Ben Woodcroft
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.9.
2016-06-28gnu: r: Add pango to inputs.Ricardo Wurmus
* gnu/packages/statistics.scm (r)[inputs]: Remove cairo, add pango.
2016-06-27tests: Add Avahi and NSS-mDNS test.Ludovic Courtès
* gnu/tests/base.scm (%avahi-os): New variable. (run-nss-mdns-test): New procedure. (%test-nss-mdns): New variable.
2016-06-27services: avahi: Add #:debug? parameter.Ludovic Courtès
* gnu/services/avahi.scm (<avahi-configuration>)[debug?]: New field. (avahi-shepherd-service): Honor it. (avahi-service): Add #:debug? and honor it. * doc/guix.texi (Networking Services): Adjust accordingly.
2016-06-27services: avahi: Pass --daemonize and check for the PID file.Ludovic Courtès
This makes sure the service's 'start' finishes when avahi-daemon is ready to process requests. * gnu/services/avahi.scm (avahi-shepherd-service): Use --daemonize instead of --syslog and add #:pid-file.
2016-06-27tests: 'marionette-service-type' nows takes a <marionette-configuration>.Ludovic Courtès
* gnu/tests.scm (<marionette-configuration>): New record type. (marionette-shepherd-service): Argument now is a <marionette-configuration>. (marionette-operating-system): Adjust accordingly. Add #:requirements parameter and honor it.
2016-06-27tests: base: Add host name resolution tests.Ludovic Courtès
* gnu/tests/base.scm (run-basic-test)["host name resolution", "host not found"]: New tests.
2016-06-27services: Export more service types.Ludovic Courtès
* gnu/services/base.scm (syslog-service-type): Export. (urandom-seed-service-type): Export.
2016-06-27services: nscd: Wait for the PID file.Ludovic Courtès
* gnu/services/base.scm (nscd-shepherd-service): Pass #:pid-file.
2016-06-27doc: Fix typo for 'static-networking-service'.Ludovic Courtès
* doc/guix.texi (Networking Services): Change #:name-services to #:name-servers.
2016-06-27gnu: Add orage.Kei Kebreau
* gnu/packages/xfce.scm (orage): New variable.
2016-06-27gnu: python2-orator: Rearrange inputs.宋文武
* gnu/packages/python.scm (python2-orator)[native-inputs]: Move python2-ipaddress ... [propagated-inputs]: to here.
2016-06-27gnu: python-orator: Rearrange inputs.宋文武
* gnu/packages/python.scm (python-orator)[native-inputs]: Move python-arrow, python-blinker, python-cleo, python-fake-factory, python-inflection, python-lazy-object-proxy, python-pyaml, python-simplejson, python-wrapt ... [propagated-inputs]: to here.
2016-06-27gnu: python2-fake-factory: Rearrange inputs.宋文武
* gnu/packages/python.scm (python2-fake-factory)[native-inputs]: Move python2-ipaddress ... [propagated-inputs]: to here.
2016-06-27gnu: python-fake-factory: Rearrange inputs.宋文武
* gnu/packages/python.scm (python-fake-factory)[native-inputs]: Move python-dateutil-2, python-six ... [propagated-inputs]: to here.
2016-06-27gnu: python-email-validator: Rearrange inputs.宋文武
* gnu/packages/python.scm (python-email-validator)[native-inputs]: Move python-dnspython, python-idna ... [propagated-inputs]: to here.
2016-06-27gnu: python-cleo: Rearrange inputs.宋文武
* gnu/packages/python.scm (python-cleo)[native-inputs]: Move python-psutil, python-pylev ... [propagated-inputs]: to here.
2016-06-27gnu: python-arrow: Rearrange inputs.宋文武
* gnu/packages/python.scm (python-arrow)[native-inputs]: Move python-dateutil-2 ... [propagated-inputs]: to here.
2016-06-27gnu: python-pykafka: Rearrange inputs.宋文武
* gnu/packages/python.scm (python-pykafka)[native-inputs]: Move python-gevent, python-kazoo, python-tabulate ... [propagated-inputs]: to here.
2016-06-27gnu: python-kazoo: Rearrange inputs.宋文武
* gnu/packages/python.scm (python-kazoo)[native-inputs]: Move six ... [propagated-inputs]: to here.
2016-06-27gnu: python-twisted: Rearrange inputs.宋文武
* gnu/packages/python.scm (python-twisted)[native-inputs]: Move python-zope-interface ... [propagated-inputs]: to here.
2016-06-27gnu: Add Go 1.4.Matthew Jordan
* gnu/local.mk: Modified file. * gnu/packages/golang.scm: New file. Co-authored-by: Efraim Flashner <efraim@flashner.co.il> Co-authored-by: Andy Wingo <wingo@igalia.com> Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-06-27gnu: Add khmer.Ben Woodcroft
* gnu/packages/bioinformatics.scm (khmer): New variable. * gnu/packages/patches/khmer-use-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2016-06-27gnu: Add python-screed.Ben Woodcroft
* gnu/packages/bioinformatics.scm (python-screed, python2-screed): New variables.
2016-06-27gnu: qttools: Update to 5.6.1-1.Efraim Flashner
* gnu/packages/qt.scm (qttools): Update to 5.6.1-1.
2016-06-27gnu: qtlocation: Update to 5.6.1-1.Efraim Flashner
* gnu/packages/qt.scm (qtlocation): Update to 5.6.1-1.
2016-06-27gnu: qtwebchannel: Update to 5.6.1-1.Efraim Flashner
* gnu/packages/qt.scm (qtwebchannel): Update to 5.6.1-1.
2016-06-27gnu: qtserialport: Update to 5.6.1-1.Efraim Flashner
* gnu/packages/qt.scm (qtserialport): Update to 5.6.1-1. [inputs]: Add eudev.
2016-06-27gnu: qtwayland: Update to 5.6.1-1.Efraim Flashner
* gnu/packages/qt.scm (qtwayland): Update to 5.6.1-1.
2016-06-27gnu: qtmultimedia: Update to 5.6.1-1.Efraim Flashner
* gnu/packages/qt.scm (qtmultimedia): Update to 5.6.1-1.
2016-06-27gnu: qtsensors: Update to 5.6.1-1.Efraim Flashner
* gnu/packages/qt.scm (qtsensors): Update to 5.6.1-1.
2016-06-27gnu: qtwebsockets: Update to 5.6.1-1.Efraim Flashner
* gnu/packages/qt.scm (qtwebsockets): Update to 5.6.1-1.
2016-06-27gnu: qtconnectivity: Update to 5.6.1-1.Efraim Flashner
* gnu/packages/qt.scm (qtconnectivity): Update to 5.6.1-1.
2016-06-27gnu: qtdeclarative: Update to 5.6.1-1.Efraim Flashner
* gnu/packages/qt.scm (qtdeclarative): Update to 5.6.1-1.
2016-06-27gnu: qtxmlpatterns: Update to 5.6.1-1.Efraim Flashner
* gnu/packages/qt.scm (qtxmlpatterns): Update to 5.6.1-1.
2016-06-27gnu: qtx11extras: Update to 5.6.1-1.Efraim Flashner
* gnu/packages/qt.scm (qtx11extras): Update to 5.6.1-1.
2016-06-27gnu: qtimageformats: Update to 5.6.1-1.Efraim Flashner
* gnu/packages/qt.scm (qtimageformats): Update to 5.6.1-1.
2016-06-27gnu: qtsvg: Update to 5.6.1-1.Efraim Flashner
* gnu/packages/qt.scm (qtsvg): Update to 5.6.1-1.
2016-06-27gnu: qtbase: Update to 5.6.1-1.Efraim Flashner
* gnu/packages/qt.scm (qtbase): Update to 5.6.1-1.
2016-06-27gnu: qtbase: Add eudev and libinput support.Efraim Flashner
* gnu/packages/qt.scm (qtbase)[inputs]: Add eudev, libinput.
2016-06-27gnu: qtbase: Don't propagate mesa.Efraim Flashner
* gnu/packages/qt.scm (qtbase)[propagated-inputs]: Move mesa ... [inputs]: ... to here. (qtsvg)[propagated-inputs]: No need to clear propagated-inputs.
2016-06-26daemon: Rename 'NIX_CONF_DIR' to 'GUIX_CONFIGURATION_DIRECTORY'.David Craven
Partly fixes <http://bugs.gnu.org/22459>. Reported by Jeff Mickey <j@codemac.net> and David Craven <david@craven.ch>. * nix/libstore/globals.cc (Settings::processEnvironment()): Change 'NIX_CONF_DIR' to 'GUIX_CONFIGURATION_DIRECTORY'. * nix/local.mk (libstore_a_CPPFLAGS): Likewise. * guix/config.scm.in (%config-directory): Likewise. * build-aux/test-env.in: Likewise. * gnu/packages/patches/hydra-automake-1.15.patch: Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-06-26doc: Augment mcron example.Ludovic Courtès
Suggested by Danny Milosavljevic. * doc/guix.texi (Scheduled Job Execution): Add unprivileged job example, and show the use of thunks as job actions and gexps.
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