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2020-03-02gnu: vim: Update to 8.2.0343.Efraim Flashner
* gnu/packages/vim.scm (vim): Update to 8.2.0343.
2020-03-01gnu: r-multiassayexperiment: Update to 1.12.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.3.
2020-03-01gnu: r-cicero: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.2.
2020-03-01gnu: r-mlinterfaces: Update to 1.66.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.4.
2020-03-01gnu: r-biocneighbors: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.2.
2020-03-01gnu: r-chippeakanno: Update to 3.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.20.1.
2020-03-01gnu: r-hdf5array: Update to 1.14.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.3.
2020-03-01gnu: r-rsamtools: Update to 2.2.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.2.3.
2020-03-01gnu: r-edger: Update to 3.28.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.28.1.
2020-03-01gnu: gwl: Update to 0.2.1.Ricardo Wurmus
* gnu/packages/package-management.scm (gwl): Update to 0.2.1. [arguments]: Add phase "fix-tests".
2020-03-01gnu: r-nloptr: Update to 1.2.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-nloptr): Update to 1.2.2.
2020-03-01gnu: r-gplots: Update to 3.0.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gplots): Update to 3.0.3.
2020-03-01gnu: r-mvtnorm: Update to 1.1-0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.1-0.
2020-03-01gnu: r-rlang: Update to 0.4.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.5.
2020-03-01gnu: r-digest: Update to 0.6.25.Ricardo Wurmus
* gnu/packages/statistics.scm (r-digest): Update to 0.6.25.
2020-03-01gnu: r-nnet: Update to 7.3-13.Ricardo Wurmus
* gnu/packages/statistics.scm (r-nnet): Update to 7.3-13.
2020-03-01gnu: r-seurat: Update to 3.1.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.4. [propagated-inputs]: Add r-patchwork.
2020-03-01gnu: r-wgcna: Update to 1.69.Ricardo Wurmus
* gnu/packages/cran.scm (r-wgcna): Update to 1.69. [propagated-inputs]: Remove r-robust.
2020-03-01gnu: r-quanteda: Update to 2.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-quanteda): Update to 2.0.0. [propagated-inputs]: Remove r-lubridate, r-rspectra, and r-spacyr; add r-jsonlite.
2020-03-01gnu: r-gdina: Update to 2.7.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-gdina): Update to 2.7.9.
2020-03-01gnu: r-subplex: Update to 1.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-subplex): Update to 1.6.
2020-03-01gnu: r-rpf: Update to 1.0.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-rpf): Update to 1.0.3.
2020-03-01gnu: r-dalex: Update to 1.0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-dalex): Update to 1.0.1.
2020-03-01gnu: r-styler: Update to 1.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-styler): Update to 1.3.2.
2020-03-01gnu: r-gridgraphics: Update to 0.5-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-gridgraphics): Update to 0.5-0.
2020-03-01gnu: r-protviz: Update to 0.6.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-protviz): Update to 0.6.3.
2020-03-01gnu: r-rvcheck: Update to 0.1.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-rvcheck): Update to 0.1.8.
2020-03-01gnu: r-rcppannoy: Update to 0.0.15.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.15.
2020-03-01gnu: r-mvabund: Update to 4.1.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-mvabund): Update to 4.1.3.
2020-03-01gnu: r-manipulatewidget: Update to 0.10.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-manipulatewidget): Update to 0.10.1.
2020-03-01gnu: r-effectsize: Update to 0.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-effectsize): Update to 0.2.0.
2020-03-01gnu: r-factominer: Update to 2.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-factominer): Update to 2.3.
2020-03-01gnu: r-tinytex: Update to 0.20.Ricardo Wurmus
* gnu/packages/cran.scm (r-tinytex): Update to 0.20.
2020-03-01gnu: r-uuid: Update to 0.1-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-uuid): Update to 0.1-4.
2020-03-01gnu: r-broom: Update to 0.5.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-broom): Update to 0.5.5.
2020-03-01gnu: r-cli: Update to 2.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-cli): Update to 2.0.2.
2020-03-01gnu: r-sp: Update to 1.4-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-sp): Update to 1.4-1.
2020-03-01gnu: r-dendextend: Update to 1.13.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-dendextend): Update to 1.13.4.
2020-03-01gnu: r-modelr: Update to 0.1.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-modelr): Update to 0.1.6. [propagated-inputs]: Add r-tidyselect.
2020-03-01gnu: r-matrix-utils: Update to 0.9.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-matrix-utils): Update to 0.9.8.
2020-03-01gnu: r-gkmsvm: Update to 0.80.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.80.0. [propagated-inputs]: Remove r-biocgenerics, r-biostrings, r-genomeinfodb, r-iranges, r-rtracklayer, and r-s4vectors.
2020-03-01gnu: emacs-relint: Update to 1.14.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.14.
2020-03-01gnu: emacs-xr: Update to 1.16.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.16.
2020-03-01gnu: qemu-minimal-2.10: Use minimal dependencies from qemu-minimal.Jan Nieuwenhuizen
Without this patch qemu-minimal-2.10 is not really minimal; it depends on cups, ffmpeg, ghostscript, gstreamer, gtk, spice, ... * gnu/packages/virtualization.scm (qemu-minimal-2.10) [native-inputs]: Inherit from QEMU-MINIMAL instead of QEMU. [inputs]: Likewise. Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-03-01gnu: guile-squee: Fix the "guile3.0-squee" variant.Christopher Baines
* gnu/packages/guile-xyz.scm (guile3.0-squee): Switch inputs to native-inputs.
2020-03-01gnu: guile-email: Add "guile3.0-email" variant.Christopher Baines
* gnu/packages/guile-xyz.scm (guile3.0-email): New variable.
2020-03-01gnu: guile-squee: Add "guile3.0-squee" variant.Christopher Baines
* gnu/packages/guile-xyz.scm (guile3.0-squee): New variable.
2020-03-01gnu: python-construct: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/python-xyz.scm (python-construct)[home-page]: Use HTTPS.
2020-03-01gnu: warzone2100: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/games.scm (warzone2100)[home-page]: Use HTTPS.
2020-03-01gnu: python-sphinx: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/sphinx.scm (python-sphinx)[home-page]: Use HTTPS.
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