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2020-04-30Merge branch 'master' into core-updatesMarius Bakke
Conflicts: gnu/local.mk gnu/packages/backup.scm gnu/packages/emacs-xyz.scm gnu/packages/guile.scm gnu/packages/lisp.scm gnu/packages/openldap.scm gnu/packages/package-management.scm gnu/packages/web.scm gnu/packages/xorg.scm
2020-04-30gnu: emacs-toml-mode: Fix syntax error in description.Marius Bakke
* gnu/packages/emacs-xyz.scm (emacs-toml-mode)[description]: Replace usage of @acronym with @dfn to work around a Guile Texinfo limitation.
2020-04-30doc: Bootloader Configuration: Fix an obsolete example.Leo Famulari
Reported by rawmat on #guix. * doc/guix.texi (Bootloader Configuration): Replace 'grub-configuration' with 'bootloader-configuration'.
2020-04-30gnu: guile-json: Update to 3.5.0.Marius Bakke
* gnu/packages/patches/guile-json-cross.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/guile.scm (guile-json-3): Update to 3.5.0. [source](patches): Remove. [native-inputs]: Remove AUTOCONF and AUTOMAKE. [arguments]: Remove.
2020-04-30gnu: diffoscope: Update to 143.Vagrant Cascadian
* gnu/packages/diffoscope (diffoscope): Update to 143. [native-inputs]: Add openssl and python-h5py. [arguments] Add openssl to add-known-tools phase. [arguments] Remove hdf5 from add-known-tools phase, added upstream.
2020-04-30gnu: MPD: Update to 0.21.23.Leo Famulari
* gnu/packages/mpd.scm (mpd): Update to 0.21.23.
2020-04-30gnu: libntlm: Update to 1.6 [fixes CVE-2019-17455].Simon Josefsson
* gnu/packages/gsasl.scm (libntlm): Update to 1.6. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-04-30gnu: sbcl-osicat: Fix library path.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-osicat)[arguments]: Replace 'cleanup phase to preserve the location of libosicat.so so that it can be found when loading the system.
2020-04-30gnu: r-vgam: Update to 1.1-3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-3. [inputs]: Move gfortran from here... [native-inputs]: ...to here.
2020-04-30gnu: r-rcpparmadillo: Update to 0.9.870.2.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.870.2.0.
2020-04-30gnu: r-spatial: Update to 7.3-12.Ricardo Wurmus
* gnu/packages/statistics.scm (r-spatial): Update to 7.3-12.
2020-04-30gnu: r-nnet: Update to 7.3-14.Ricardo Wurmus
* gnu/packages/statistics.scm (r-nnet): Update to 7.3-14.
2020-04-30gnu: r-kernsmooth: Update to 2.23-17.Ricardo Wurmus
* gnu/packages/statistics.scm (r-kernsmooth): Update to 2.23-17.
2020-04-30gnu: r-foreign: Update to 0.8-79.Ricardo Wurmus
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-79.
2020-04-30gnu: r-class: Update to 7.3-17.Ricardo Wurmus
* gnu/packages/statistics.scm (r-class): Update to 7.3-17.
2020-04-30gnu: r-mass: Update to 7.3-51.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.6.
2020-04-30gnu: r-boot: Update to 1.3-25.Ricardo Wurmus
* gnu/packages/statistics.scm (r-boot): Update to 1.3-25.
2020-04-30gnu: r-kutils: Update to 1.70.Ricardo Wurmus
* gnu/packages/cran.scm (r-kutils): Update to 1.70. [propagated-inputs]: Remove r-lavaan.
2020-04-30gnu: r-univoutl: Update to 0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-univoutl): Update to 0.2.
2020-04-30gnu: r-graphlayouts: Update to 0.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-graphlayouts): Update to 0.7.0.
2020-04-30gnu: r-systemfonts: Update to 0.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.1.
2020-04-30gnu: r-ggfortify: Update to 0.4.10.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.10.
2020-04-30gnu: r-dalex: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-dalex): Update to 1.2.1.
2020-04-30gnu: r-arm: Update to 1.11-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-arm): Update to 1.11-1.
2020-04-30gnu: r-usethis: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-usethis): Update to 1.6.1.
2020-04-30gnu: r-rootsolve: Update to 1.8.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rootsolve): Update to 1.8.2.1.
2020-04-30gnu: r-proxy: Update to 0.4-24.Ricardo Wurmus
* gnu/packages/cran.scm (r-proxy): Update to 0.4-24.
2020-04-30gnu: r-pkgbuild: Update to 1.0.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.7.
2020-04-30gnu: Add miniasm.Roel Janssen
* gnu/packages/bioinformatics.scm (miniasm): New variable.
2020-04-30gnu: Add one more missing module import.Ricardo Wurmus
This is a follow-up to commit 61fc72d3ac949d0c65690ee25bb1daf01f39bb42. * gnu/packages/backup.scm: Add missing import of (gnu packages protobuf).
2020-04-30gnu: Add missing module import.Ricardo Wurmus
This is a follow-up to commit 61fc72d3ac949d0c65690ee25bb1daf01f39bb42. * gnu/packages/backup.scm: Add missing import of (guix build-system cmake).
2020-04-30gnu: Add zbackup.Nicolas Goaziou
* gnu/packages/backup.scm (zbackup): New variable.
2020-04-30gnu: python2-pysnptools: Update to 0.4.11.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python2-pysnptools): Update to 0.4.11; implement in terms of... (python-pysnptools): ...this new variable. [propagated-inputs]: Add python-dill, python-h5py, and python-psutil.
2020-04-30gnu: kaldi-gstreamer-server: Fix bug.Ricardo Wurmus
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[arguments]: Patch master_server.py before build.
2020-04-30gnu: kaldi-gstreamer-server: Use Tornado 6.Ricardo Wurmus
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[inputs]: Replace python-tornado with python-tornado-6.
2020-04-30gnu: Add python-tornado-6.Ricardo Wurmus
* gnu/packages/python-web.scm (python-tornado-6): New variable.
2020-04-30gnu: python2-warpedlmm: Fix build.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python2-warpedlmm)[propagated-inputs]: Add python2-weave. [arguments]: Disable tests and add "use-weave" phase.
2020-04-30gnu: Add python2-weave.Ricardo Wurmus
* gnu/packages/python-science.scm (python2-weave): New variable.
2020-04-30gnu: Add r-rserve.Eric Brown
* gnu/packages/cran.scm (r-rserve): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-04-30gnu: gnuradio: Fix runtime python environment for plugins.Guillaume Le Vaillant
* gnu/packages/radio.scm (gnuradio)[native-search-paths]: Add PYTHONPATH. [native-inputs]: Move python ... [inputs]: ... here.
2020-04-29gnu: linux-libre: Update to 5.4.36.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.36. (linux-libre-5.4-pristine-source): Update hash.
2020-04-29gnu: linux-libre@5.6: Update to 5.6.8.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.6-version): Update to 5.6.8. (linux-libre-5.6-pristine-source): Update hash.
2020-04-29gnu: linux-libre@4.19: Update to 4.19.119.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.119. (linux-libre-4.19-pristine-source): Update hash.
2020-04-30gnu: python-hacking: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/openstack.scm (python-hacking): Update to 1.1.0. [arguments]: Add "delete-broken-test" phase. [propagated-inputs]: Replace python-flake8-2.5 with python-flake8-2.6.
2020-04-30gnu: python-flake8-2.5: Update to 2.6.2.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-flake8-2.5): Update to 2.6.2; rename it... (python-flake8-2.6): ...to this. [arguments]: Add phase "use-later-pycodestyles", and move "check" phase after "install". [propagated-inputs]: Explicitly list python-pycodestyle, python-entrypoints, python-pyflakes-1.2, and python-mccabe.
2020-04-30gnu: Remove python2-flake8-2.5.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python2-flake8-2.5): Remove variable. (python-flake8-2.5)[properties]: Remove.
2020-04-30gnu: Replace python-pyflakes-0.8.1 with python-pyflakes-1.2.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pyflakes-0.8.1): Remove variable. (python-pyflakes-1.2): New variable. * gnu/packages/openstack.scm (python-hacking)[propagated-inputs]: Replace python-pyflakes-0.8.1 with python-pyflakes-1.2.
2020-04-30gnu: Remove python2-pyflakes-0.8.1.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python2-pyflakes-0.8.1): Remove variable.
2020-04-30gnu: Add python-cmd2.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-cmd2): New variable.
2020-04-30gnu: Add python-voluptuous.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-voluptuous): New variable.
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