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2021-02-19gnu: python-scikit-learn: Update to 0.24.1.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.24.1. [propagated-inputs]: Add python-threadpoolctl. (python2-scikit-learn)[inputs,native-inputs,propagated-inputs]: Do not inherit these fields.
2021-02-19gnu: Add prinseq.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (prinseq): New variable.
2021-02-19gnu: Add perl-statistics-pca.Ricardo Wurmus
* gnu/packages/perl.scm (perl-statistics-pca): New variable.
2021-02-19gnu: Add perl-math-cephes.Ricardo Wurmus
* gnu/packages/perl-maths.scm (perl-math-cephes): New variable.
2021-02-19gnu: Add butt.Leo Famulari
* gnu/packages/audio.scm (butt): New variable.
2021-02-19gnu: Add xoscope.Leo Famulari
* gnu/packages/electronics.scm (xoscope): New variable.
2021-02-19gnu: Add comedilib.Leo Famulari
* gnu/packages/electronics.scm (comedilib): New variable.
2021-02-19gnu: Add GtkDatabox.Leo Famulari
* gnu/packages/gtk.scm (gtkdatabox): New variable.
2021-02-19services: cuirass: Add "simple-cuirass-services".Mathieu Othacehe
* gnu/services/cuirass.scm (<build-manifest>, <simple-cuirass-configuration>): New records. (build-manifest, build-manifest?, simple-cuirass-configuration, simple-cuirass-configuration?, simple-cuirass-services): New procedures. (%default-cuirass-config): New variable. * gnu/tests/cuirass.scm (%cuirass-simple-test): New variable. * doc/guix.texi (Continuous Integration): Document it.
2021-02-19tests: cuirass: Add an operating system argument.Mathieu Othacehe
Rewrite so that "run-cuirass-test" takes an operating-system argument. This is functionally equivalent. * gnu/tests/cuirass.scm (%derivation-file, git-service, cow-service, %cuirass-specs): New variables. (cuirass-services): New procedure. (run-cuirass-test): Add an "operating-system" argument. (%cuirass-test): Adapt it. (%cuirass-remote-test): Ditto.
2021-02-19tests: Export %simple-os.Mathieu Othacehe
* gnu/tests.scm (%simple-os): Export it.
2021-02-19gnu: Add perl-contextual-return.Ricardo Wurmus
* gnu/packages/perl.scm (perl-contextual-return): New variable.
2021-02-19gnu: Add perl-want.Ricardo Wurmus
* gnu/packages/perl.scm (perl-want): New variable.
2021-02-19gnu: Add perl-math-matrixreal.Ricardo Wurmus
* gnu/packages/perl-maths.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2021-02-19gnu: Add ngshmmalign.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (ngshmmalign): New variable.
2021-02-19gnu: python-locust: Update to 1.4.3.Maxim Cournoyer
* gnu/packages/benchmark.scm (python-locust): Update to 1.4.3. [phases]: Remove trailing #t. {check}: Disable the 'test_html_report_option', 'test_custom_exit_code' and 'test_webserver' tests.
2021-02-19doc: Add an example of how the open file descriptors limit can be raised.Maxim Cournoyer
* doc/guix.texi (Base Services)[pam-limits-service]: Add an example and explanation of how the 'nofile', or open file descriptors value, can be configured.
2021-02-19gnu: python-psutil: Update to 5.8.0.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-psutil): Update to 5.8.0. [home-page]: Update. [description]: Please lint and re-flow text.
2021-02-19gnu: python-geventhttpclient: Adjust to build with updated gevent.Maxim Cournoyer
* gnu/packages/python-web.scm (python-geventhttpclient): Delete trailing #t. [phases]{fix-compatibility-issue}: New phase. {check}: Adjust comment and remove the extraneous string-append.
2021-02-19gnu: python-greenlet: Update to 1.0.0.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-greenlet): Update to 1.0.0.
2021-02-19gnu: python-gevent: Update to 21.1.2.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-gevent): Update to 21.1.2. Delete trailing #t.
2021-02-19ui: Fix typo in description.Brice Waegeneire
* guix/ui.scm (switch-to-generation*): Fix typo in description.
2021-02-19gnu: Add stackistry.Sharlatan Hellseher
* gnu/packages/astronomy.scm (stackistry): New variable. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2021-02-19gnu: Add libskry.Sharlatan Hellseher
* gnu/packages/astronomy.scm (libskry): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-02-19gnu: Add python-astroalign.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astroalign): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-02-19gnu: Add python-sep.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-sep): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-02-19gnu: Add python-pyerfa.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-pyerfa): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-02-19gnu: Add erfa.Sharlatan Hellseher
* gnu/packages/astronomy.scm (erfa): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-02-19gnu: Add qfits.Sharlatan Hellseher
* gnu/packages/astronomy.scm (qfits): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-02-19gnu: Add python-skyfield.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-skyfield): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-02-19gnu: Add python-extension-helpers.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-extension-helpers): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-02-19gnu: Add python-pytest-astropy.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pytest-astropy): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-02-19gnu: Add python-pytest-astropy-header.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pytest-astropy-header): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-02-19gnu: nushell: Update to 0.27.1.Nicolas Goaziou
* gnu/packages/shells.scm (nushell): Update to 0.27.1. [arguments]: Add rust-serial-test to Cargo development inputs. (rust-nu-cli-0.27): (rust-nu-command-0.27): (rust-nu-data-0.27): (rust-nu-engine-0.27): (rust-nu-errors-0.27): (rust-nu-json-0.27): (rust-nu-parser-0.27): (rust-nu-plugin-0.27): (rust-nu-plugin-binaryview-0.27): (rust-nu-plugin-chart-0.27): (rust-nu-plugin-fetch-0.27): (rust-nu-plugin-from-bson-0.27): (rust-nu-plugin-from-sqlite-0.27): (rust-nu-plugin-inc-0.27): (rust-nu-plugin-match-0.27): (rust-nu-plugin-post-0.27): (rust-nu-plugin-ps-0.27): (rust-nu-plugin-s3-0.27): (rust-nu-plugin-selector-0.27): (rust-nu-plugin-start-0.27): (rust-nu-plugin-sys-0.27): (rust-nu-plugin-textview-0.27): (rust-nu-plugin-to-bson-0.27): (rust-nu-plugin-to-sqlite-0.27): (rust-nu-plugin-tree-0.27): (rust-nu-plugin-xpath-0.27): (rust-nu-protocol-0.27): (rust-nu-source-0.27): (rust-nu-stream-0.27): (rust-nu-table-0.27): (rust-nu-test-support-0.27): (rust-nu-value-ext-0.27): Update to 0.27.1.
2021-02-19gnu: Add cl-glsl-packing.Sharlatan Hellseher
* gnu/packages/lisp-xyz.scm (cl-glsl-packing, ecl-glsl-packing, sbcl-glsl-packing): New variables. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-02-18gnu: Add vitetris.Stefan Reichör
* gnu/packages/games.scm (vitetris): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-02-18gnu: emacs-elpy: Fix build.Maxim Cournoyer
Fixes <https://issues.guix.gnu.org/46516>, which was caused by commit 41abf3b3a0fabe06817f3940cba778974ce79c46. * gnu/packages/emacs-xyz.scm (emacs-elpy)[phases] {patch-ffip-project-search-call}: New phase. Reported-by: Simon Streit <simon@netpanic.org> and others.
2021-02-18gnu: webrtc-for-telegram-desktop: Adjust native inputs.Raghav Gururajan
This fixes a segmentation fault in telegram-desktop. * gnu/packages/telegram.scm (webrtc-for-telegram-desktop) [native-inputs]: Add gcc-9 and perl. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-02-18gnu: Add emacs-kbd.Yurii Kholodkov
* gnu/packages/emacs-xyz.scm (emacs-kbd): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-02-18gnu: BIND: Point out where to find the release notes.Leo Famulari
The isc.org web page is hard to navigate and designed to steer users into support contracts, so let's give a hint for Guix packagers. * gnu/packages/dns.scm (bind): Add comment.
2021-02-18gnu: isc-dhcp: Update bundled BIND to 9.11.28 [fixes CVE-2020-8625].Leo Famulari
* gnu/packages/admin.scm (isc-dhcp)[inputs]: Update bundled BIND to 9.11.28.
2021-02-18gnu: gperftools: Update to 2.8.1.Greg Hogan
* gnu/packages/cpp.scm (gperftools): Update to 2.8.1. [arguments]: Set '#:parallel-tests? #f'. Co-authored-by: Leo Famulari <leo@famulari.name>
2021-02-18gnu: emacs-eldev: Update to 0.8.1.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-eldev): Update to 0.8.1. [arguments]: Skip failing tests in an additional phase.
2021-02-18gnu: r-shiny: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-shiny): Update to 1.6.0. [source]: Remove minified JavaScript files in a snippet. [arguments]: Update phase replace-bundled-minified-JavaScript. [propagated-inputs]: Add r-bslib, r-cachem, r-commonmark, r-ellipsis, r-glue, and r-lifecycle. [inputs]: Remove js-html5shiv, js-json2, js-respond, and js-es5-shim. [native-inputs]: Add js-bootstrap-accessibility.
2021-02-18gnu: Add r-bslib.Ricardo Wurmus
* gnu/packages/cran.scm (r-bslib): New variable.
2021-02-18gnu: Add r-sass.Ricardo Wurmus
* gnu/packages/cran.scm (r-sass): New variable.
2021-02-18gnu: Add r-jquerylib.Ricardo Wurmus
* gnu/packages/cran.scm (r-jquerylib): New variable.
2021-02-18gnu: emacs-execline: Fix version string.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-execline): Use version tag matching commit chosen.
2021-02-18gnu: emacs-org-roam: Update to 1.2.3.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-org-roam): Update to 1.2.3.
2021-02-18gnu: emacs-company-emoji: Update to 2.6.1.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-company-emoji): Update to 2.6.1.
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