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2016-04-19gnu: Rename Java packages to match new naming specification.Hartmut Goebel
* gnu/packages/bioinformatics.scm (htsjdk): Rename to... (java-htsjdk): ...this. (ngs-java): Rename to... (java-ngs): ...this. (ncbi-vdb)[arguments,inputs]: Use new name. * gnu/packages/java.scm (swt): Rename to... (java-swt): ...this. * gnu/packages/music.scm (tuxguitar)[make-flags,inputs,arguments]: Use new name of package "swt".
2016-04-19doc: Add specification for Java packagesHartmut Goebel
* doc/guix.texi (Java Packages): New subsection.
2016-04-19gnu: python2-plastid: Propagate setuptools.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python2-plastid)[native-inputs]: Move python2-setuptools from here... [propagated-inputs]: ...to here.
2016-04-19gnu: r: Update to 3.2.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r): Update to 3.2.5.
2016-04-19gnu: Add icedtea-8.Ricardo Wurmus
* gnu/packages/java.scm (icedtea-8): New variable.
2016-04-19doc: Mention 'mkswap' during installation.Ludovic Courtès
Reported by Thierry Micoud <thierrymicoud@gmail.com>. * doc/guix.texi (Preparing for Installation): Mention 'mkswap'.
2016-04-19gnu: Add python-plastid.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-plastid, python2-plastid): New variables.
2016-04-19gnu: Add python-twobitreader.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-twobitreader, python2-twobitreader): New variables.
2016-04-18gnu: Add cabextract.Danny Milosavljevic
* gnu/packages/compression.scm (cabextract): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-04-18gnu: Add dillo.Kei Yamashita
* gnu/packages/dillo.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-04-18gnu: fltk: Add Xft support.Kei Yamashita
* gnu/packages/fltk.scm (fltk)[inputs]: Add libxft. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-04-18syscalls: If a syscall is not available, defer the error.Mark H Weaver
* guix/build/syscalls.scm (syscall->procedure): New procedure. (mount, umount, swapon, swapoff, clone, pivot-root): Use it. (clone): Add case for nonexistent syscall id. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-04-18utils: 'cache-directory' gracefully deals with unset 'HOME'.Ludovic Courtès
Fixes <http://bugs.gnu.org/23165>. * guix/utils.scm (cache-directory): Use 'getpwuid' when 'HOME' is unset.
2016-04-18gnu: vlc: Make 'plugins.dat' generation reproducible.Ludovic Courtès
Fixes <http://bugs.gnu.org/23307>. * gnu/packages/video.scm (vlc)[arguments]: Add #:phases.
2016-04-18gnu: vlc: Do not capture the build time.Ludovic Courtès
* gnu/packages/video.scm (vlc)[source]: Add 'snippet'.
2016-04-18gnu: vlc: Build against ffmpeg 2.8.Ludovic Courtès
Fixes <http://bugs.gnu.org/23256>. Reported by Christopher Allan Webber <cwebber@dustycloud.org>. * gnu/packages/video.scm (vlc): Use FFMPEG-2.8 instead of FFMPEG.
2016-04-18gnu: ffmpeg: Re-add 2.8.6.Ludovic Courtès
* gnu/packages/video.scm (ffmpeg-2.8): New variable.
2016-04-18emacs: Display license info on button press in Package Info buffer.Alex Kost
* emacs/guix-ui-package.el (guix-package-license): Adjust button action to display license info instead of browsing license URL.
2016-04-18emacs: Add location "Packages" button to Package Info buffer.Alex Kost
* emacs/guix-ui-package.el (guix-package-info-insert-location): New procedure. (guix-package-info-format): Use it. (guix-output-info-format): Likewise.
2016-04-18emacs: Add interface for package locations.Alex Kost
* emacs/guix-main.scm (%package-location-param-alist): New variable. (package-location->sexp, package-location-entries): New procedures. * emacs/guix-ui-location.el: New file. * emacs.am (ELFILES): Add it. * doc/emacs.texi (Emacs Package Locations): Document 'guix-locations'. * NEWS: Mention it.
2016-04-18doc: emacs: Add "Package Source Locations" section.Alex Kost
* doc/emacs.texi (Emacs Commands): Move description of 'guix-edit' command to... (Emacs Package Locations): ... here. Document 'guix-find-location'. New node. * doc/guix.texi (Top): Add it.
2016-04-18emacs: Make 'guix-find-location' interactive.Alex Kost
* emacs/guix-location.el (guix-find-location): Make interactive. Adjust to handle "reduced" locations (without line and column numbers).
2016-04-18emacs: Display message if license not found.Alex Kost
* emacs/guix-ui-license.el (guix-license-message): New procedure. (guix-license-info-message-function): Use it. (guix-license-list-message-function): Likewise.
2016-04-18emacs: Separate package license code.Alex Kost
Move list/info interface code from "guix-license.el" to "guix-ui-license.el". * emacs/guix-license.el (guix-license-get-entries, guix-license-get-display) (guix-license-insert-packages-button, guix-license-insert-comment) (guix-licenses): Move to... * emacs/guix-ui-license.el: ... here. New file. * emacs.am (ELFILES): Add it.
2016-04-18emacs: Separate package location code.Alex Kost
* emacs/guix-base.el (guix-directory, guix-read-directory) (guix-set-directory): Move to "guix-backend.el". (guix-find-location, guix-package-location, guix-edit): Move to... * emacs/guix-location.el: ... here. New file. * emacs/guix-ui-package.el: Use it. * emacs.am (ELFILES): Add it.
2016-04-18emacs: Add 'guix-packages-by-location' command.Alex Kost
* emacs/guix-main.scm (packages-by-location-file, package-location-files): New procedures. (%patterns-makers): Add 'location' search type. * emacs/guix-messages.el (guix-message-packages-by-location): New procedure. (guix-messages): Use it. * emacs/guix-read.el (guix-package-locations) (guix-read-package-location): New procedures. * emacs/guix-ui-package.el (guix-packages-by-location): New command. * doc/emacs.texi (Emacs Commands): Document it. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-04-18gnu: ruby-bio-commandeer: Update to 0.1.3.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-bio-commandeer): Update to 0.1.3.
2016-04-18mapped-devices: LUKS partitions can be designated by their UUID.Ludovic Courtès
* gnu/system/mapped-devices.scm (device-mapping-service-type): Add 'modules' and 'imported-modules' fields to 'shepherd-service'. (open-luks-device): Use 'find-partition-by-luks-uuid' to lookup the partition when SOURCE is a bytevector. * gnu/system/linux-initrd.scm (base-initrd): Augment 'use-modules' form. * doc/guix.texi (Mapped Devices): Give example with a UUID.
2016-04-18mapped-devices: 'mapped-device-service' takes a <mapped-device>.Ludovic Courtès
* gnu/system/mapped-devices.scm (device-mapping-service): Take a <mapped-device> instead of 3 parameters. (device-mapping-service-type): Adjust accordingly. * gnu/system.scm (device-mapping-services): Adjust accordingly.
2016-04-18services: Move 'device-mapping-service' to (gnu system mapped-devices).Ludovic Courtès
* gnu/services/base.scm (device-mapping-service-type) (device-mapping-service): Move to... * gnu/system/mapped-devices.scm (device-mapping-service-type): (device-mapping-service): ... here. New variables.
2016-04-18system: Move 'luks-device-mapping' to (gnu system mapped-devices).Ludovic Courtès
* gnu/system.scm (open-luks-device, close-luks-device) (luks-device-mapping): Move to... * gnu/system/mapped-devices.scm: ... here. New file.
2016-04-18system: Add (gnu system mapped-devices).Ludovic Courtès
* gnu/system/file-systems.scm (<mapped-device>, <mapped-device-type>): Move to... * gnu/system/mapped-devices.scm: ... here. New file. * gnu/system.scm, gnu/services/base.scm, gnu/system/linux-initrd.scm: Use it. * gnu-system.am (GNU_SYSTEM_MODULES): Add it. * gnu.scm (%public-modules): Add it.
2016-04-17gnu: Add python-pyusb.Ricardo Wurmus
* gnu/packages/libusb.scm (python-pyusb, python2-pyusb): New variables.
2016-04-17gnu: khard: Update to 0.9.0.Leo Famulari
* gnu/packages/mail.scm (khard): Update to 0.9.0.
2016-04-17gnu: python-vobject: Update to 0.9.2.Leo Famulari
* gnu/packages/python.scm (python-vobject, python2-vobject): Update to 0.9.2.
2016-04-17gnu: openssh: Fix CVE-2015-8325.Leo Famulari
* gnu/packages/patches/openssh-CVE-2015-8325.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/ssh.scm (openssh): Use it.
2016-04-17gnu: Add recordmydesktop.Ludovic Courtès
* gnu/packages/video.scm (recordmydesktop): New variable.
2016-04-17install: Use 'beta' instead of 'alpha'.Ludovic Courtès
Suggested by Jelle Licht <jlicht@fsfe.org>. * gnu/system/install.scm (installation-services): Say 'beta' instead of 'alpha' and make the warning less scary.
2016-04-17gnu: python-pandas: Fix test failures.Ricardo Wurmus
* gnu/packages/patches/python-pandas-fix-tslib-test-failure.patch: New file. * gnu-system.am (dist_patch_DATA): Register it. * gnu/packages/python.scm (python-pandas)[source]: Add patch.
2016-04-17gnu: icedtea-7: Update to 2.6.5.Ricardo Wurmus
* gnu/packages/java.scm (icedtea-7): Update to 2.6.5. [inputs]: Add libxcomposite.
2016-04-17services: 'console-keymap-service' takes multiple files.Alex Kost
* gnu/services/base.scm (console-keymap-service-type): Type procedure takes a list of files instead of a single file. (console-keymap-service): Take 'files' as rest arguments. * doc/guix.texi (Base Services): Improve documentation of 'console-keymap-service'.
2016-04-17gnu: kbd: Update to 2.0.3.Alex Kost
* gnu/packages/linux.scm (kbd): Update to 2.0.3.
2016-04-17gnu: kbd: Use 'modify-phases'.Alex Kost
* gnu/packages/linux.scm (kbd)[arguments]: Use 'modify-phases'.
2016-04-17file-systems: Add 'find-partition-by-luks-uuid'.Ludovic Courtès
* gnu/build/file-systems.scm (%luks-endianness, %luks-header-size): New macros. (%luks-magic): New variable. (sub-bytevector, read-luks-header, luks-header-uuid): New procedures. (partition-predicate): Add 'read' parameter; wrap it with 'ENOENT-safe'. Use it instead of 'read-ext2-superblock*'. (read-ext2-superblock*): Remove. (partition-label-predicate, partition-uuid-predicate): Pass 'read-ext2-superblock' as the first argument. (partition-luks-uuid-predicate): New variable. (find-partition-by-luks-uuid): New procedure.
2016-04-17file-systems: Separate ENOENT catching from ext2 superblock reads.Ludovic Courtès
* gnu/build/file-systems.scm (ENOENT-safe): New procedure. (read-ext2-superblock*): Rewrite in terms of it.
2016-04-17doc: Update 'skeletons' field documentation.Ludovic Courtès
* doc/guix.texi (operating-system Reference): Update documentation of 'skeletons' as a followup to e79467f63a06811ba5dd8c8b0cc79553c5dd4e3a.
2016-04-17doc: Use new PACKAGE@VERSION syntax in example.Ludovic Courtès
* doc/guix.texi (Using the Configuration System): Use PACKAGE@VERSION syntax.
2016-04-16gnu: Add marst.John Darrington
* gnu/packages/marst.scm: New file. * gnu-system.am: Add it.
2016-04-16gnu: linux: Add case for arm64.Manolis Ragkousis
* gnu/packages/linux.scm (system->linux-architecture): Add "aarch64".
2016-04-16gnu: bootstrap: Add the location of ld.so on arm64.Manolis Ragkousis
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add the dynamic linker for aarch64-linux.
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