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2016-01-24gnu: nano: Update to 2.5.1.Efraim Flashner
* gnu/packages/nano.scm (nano): Update to 2.5.1.
2016-01-23build: container: Make 'unprivileged-user-namespace-supported?' more robust.Mark H Weaver
* gnu/build/linux-container.scm (unprivileged-user-namespace-supported?): Only read and check the first character, to cope with a possible newline in the (pseudo-)file.
2016-01-23gnu: letsencrypt and acme: Update to 0.2.0.Leo Famulari
These packages should be updated together. * gnu/packages/tls.scm (letsencrypt): Update to 0.2.0. (acme): Update to 0.2.0.
2016-01-23gnu: claws-mail: Update to 3.13.2.Efraim Flashner
* gnu/packages/mail.scm (claws-mail): Update to 3.13.2.
2016-01-23gnu: Add cufflinks.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (cufflinks): New variable.
2016-01-23gnu: Add TopHat.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (tophat): New variable. * gnu/packages/patches/tophat-build-with-later-seqan.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
2016-01-23gnu: star: Update to 2.5.1b.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (star): Update to 2.5.1b. [source]: Remove bundled htslib sources and pre-built binaries. [arguments]: Add phase "do-not-use-bundled-htslib". [inputs]: Add "htslib".
2016-01-23gnu: star: Use "modify-phases" syntax.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (star)[arguments]: Use "modify-phases" syntax.
2016-01-22gnu: fuse: Update to 2.9.5 [fixes CVE-2016-1233].Efraim Flashner
* gnu/packages/linux.scm (fuse): Update to 2.9.5.
2016-01-21gnu: american-fuzzy-lop: Update to 1.96b.Eric Bavier
* gnu/packages/debug.scm (american-fuzzy-lop): Update to 1.96b. [arguments]: Create symbolic link to custom qemu, rather than copying.
2016-01-21gnu: american-fuzzy-lop: Fix qemu configure flags.Eric Bavier
Fixes regression introduced in 06da1a6. * gnu/packages/debug.scm (american-fuzzy-lop)[qemu]: Override inherited #:configure-flags.
2016-01-21gnu: Add iftop.Leo Famulari
* gnu/packages/admin.scm (iftop): New variable.
2016-01-21Revert "gnu: Add iftop."Leo Famulari
This reverts commit 45da8c6dd10c93280277d17463d09fce6a25afe9.
2016-01-21gnu: Add iftop.Leo Famulari
* gnu/packages/admin.scm (iftop): New variable.
2016-01-22tests: Prevent 'http_proxy' from breaking Web server tests.Ludovic Courtès
* tests/lint.scm: Add call to 'unsetenv' to remove 'http_proxy'. * tests/publish.scm: Likewise.
2016-01-22doc: Fix typo in "Locales".Ludovic Courtès
* doc/guix.texi (Locales): Add missing 's'.
2016-01-22system: grub: Search root device by label or UUID if possible.Ludovic Courtès
Fixes <http://bugs.gnu.org/22281>. Reported by Christopher Allan Webber <cwebber@dustycloud.org>. * gnu/system/grub.scm (eye-candy): Add 'root-fs' parameter. Replace 'search --file' command in the output with whatever 'grub-root-search' returns. (grub-root-search): New procedure. (grub-configuration-file): Add 'store-fs' parameter. Use 'grub-root-search' instead of hard-coded 'search --file' commands. * gnu/system.scm (store-file-system, operating-system-store-file-system): New procedures. (operating-system-grub.cfg): Use it, and adjust call to 'grub-configuration-file'. * tests/system.scm: New file. * Makefile.am (SCM_TESTS): Add it.
2016-01-21gnu: ffmpeg: Update to 2.8.5.Mark H Weaver
* gnu/packages/video.scm (ffmpeg): Update to 2.8.5.
2016-01-21gnu: gajim: Update to 0.16.5 [fixes CVE-2015-8688].Mark H Weaver
* gnu/packages/messaging.scm (gajim): Update to 0.16.5. [arguments]: Disable tests.
2016-01-21gnu: bind-utils: Build and install "nsupdate".Ricardo Wurmus
* gnu/packages/dns.scm (bind-utils)[arguments]: Build and install "nsupdate" executable.
2016-01-21gnu: bind-utils: Generalize "build" and "install" phases.Ricardo Wurmus
* gnu/packages/dns.scm (bind-utils)[arguments]: Generalize "build" and "install" phases.
2016-01-21gnu: bind-utils: Use "modify-phases" syntax.Ricardo Wurmus
* gnu/packages/dns.scm (bind-utils): Use "modify-phases" syntax.
2016-01-21gnu: r-qtl: Update to 1.38-4.Pjotr Prins
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.38-4.
2016-01-21gnu: libxmp: Update to 4.3.10.Mark H Weaver
* gnu/packages/audio.scm (libxmp): Update to 4.3.10.
2016-01-20gnu: Add NQC.Eric Bavier
* gnu/packages/lego.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2016-01-20gnu: licenses: Add Mozilla Public License 1.0.Eric Bavier
* guix/licenses.scm (mpl1.0): New variable.
2016-01-20gnu: Add transmission-remote-cli.Leo Famulari
* gnu/packages/bittorrent.scm (transmission-remote-cli): New variable.
2016-01-21doc: Explain how to make the Info manual visible.Ludovic Courtès
Suggested by David Thompson <dthompson2@worcester.edu> at <http://bugs.gnu.org/22402>. * doc/guix.texi (Binary Installation): Explain how to make the Info manual visible.
2016-01-21doc: Explain how to remove services from a list.Ludovic Courtès
Suggested by <swedebugia@riseup.net>. * doc/guix.texi (Using the Configuration System): Add @unnumberedsubsubsec. Explain how to remove services from a list. Mention (gnu system).
2016-01-21services: avahi: Export service type.Ludovic Courtès
* gnu/services/avahi.scm: Export 'avahi-service-type'.
2016-01-20gnu: isc-dhcp: Update bundled bind to 9.9.8-P3 [fixes CVE-2015-8704].Mark H Weaver
* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.8-P3.
2016-01-20gnu: bind-utils: Update to 9.10.3-P3 [fixes CVE-2015-8704].Mark H Weaver
* gnu/packages/dns.scm (bind-utils): Update to 9.10.3-P3.
2016-01-20gnu: linux-libre: Add fix for CVE-2016-0728.Mark H Weaver
* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/linux.scm (linux-libre)[source]: Add patch.
2016-01-20gnu: obs: Add support for webcams.David Thompson
* gnu/packages/video.scm (obs)[inputs]: Add v4l-utils.
2016-01-20gnu: Add v4l-utils.David Thompson
* gnu/packages/video.scm (v4l-utils): New variable.
2016-01-20gnu: arb: Correct patch.Andreas Enge
* gnu/packages/patches/arb-ldconfig.patch: Correct erroneously committed file. This is a follow-up to commit ffc8f345111566e8336cbb5a77a96973826165d8.
2016-01-20gnu: arb: Update to 2.8.1.Andreas Enge
* gnu/packages/algebra.scm (arb)[source]: Update to 2.8.1. Add patch. * gnu/packages/patches/arb-ldconfig.patch: New file. * gnu-system.am (dist_patch_DATA): Register patch.
2016-01-20tests: Move beatify-description tests to import-tests.Ben Woodcroft
Fixes <http://bugs.gnu.org/22391>. * tests/cran.scm (beautify-description: use double spacing, beautify-description: transform fragment into sentence). Move from here ... * tests/import-utils.scm: ... to here. New file. * Makefile.am (SCM_TESTS): Add import-utils.
2016-01-20import: gem: Beautify only the description, not the synopsis.Ben Woodcroft
* guix/import/gem.scm (make-gem-sexp): Add synopsis argument. (gem->guix-package): Pass unbeautified synopsis to make-gem-sexp. * tests/gem.scm: Adapt it.
2016-01-20import: Add Bioconductor importer and updater.Ricardo Wurmus
* guix/import/cran.scm (%bioconductor-updater, latest-bioconductor-release, bioconductor-package?): New procedures. (cran->guix-package): Support repositories other than CRAN. (%bioconductor-url, %bioconductor-svn-url): New variables. (description->package): Update signature to distinguish between packages from different repositories. (latest-release): Rename procedure ... (latest-cran-release): ... to this. (cran-package?): Do not assume all R packages are available on CRAN. * tests/cran.scm: Update tests. * guix/scripts/import/cran.scm: Add "--archive" option and default to CRAN. * guix/scripts/refresh.scm (%updaters): Add "%bioconductor-updater". * doc/guix.texi: Document Bioconductor importer and updater.
2016-01-20gnu: enlightenment: Update to 0.20.3.Efraim Flashner
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.20.3.
2016-01-20gnu: libshout: Update to 2.4.1.Efraim Flashner
* gnu/packages/xiph.scm (libshout): Update to 2.4.1.
2016-01-20gnu: opusfile: Update to 0.7.Efraim Flashner
* gnu/packages/xiph.scm (opusfile): Update to 0.7.
2016-01-20gnu: opus: Update to 1.1.2.Efraim Flashner
* gnu/packages/xiph.scm (opus): Update to 1.1.2.
2016-01-19gnu: lilypond: Double 'max-silent-time'.Ludovic Courtès
Suggested by Mark H Weaver <mhw@netris.org>. * gnu/packages/music.scm (lilypond)[properties]: New field.
2016-01-19hydra: Honor the 'max-silent-time' package property.Ludovic Courtès
Suggested by Mark H Weaver <mhw@netris.org>. * build-aux/hydra/gnu-system.scm (package->alist): Add 'max-silent-time' pair.
2016-01-19guix build: Add '--keep-going'.Ludovic Courtès
* guix/scripts/build.scm (show-build-options-help) (%standard-build-options): Add --keep-going. * guix/scripts/build.scm (set-build-options-from-command-line): Honor it. * doc/guix.texi (Invoking guix build): Document it.
2016-01-19derivations: Add test in keep-going mode.Ludovic Courtès
* tests/derivations.scm ("derivation fails but keep going"): New test.
2016-01-19gnu: fdm: Adjust license link to point to web-accessible copy of command.cChristopher Allan Webber
* gnu/packages/mail.scm (fdm): Adjusted license field
2016-01-18gnu: Add fdm.Christopher Allan Webber
* gnu/packages/mail.scm (fdm): New variable.
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