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2016-10-28daemon: Do not error out when deduplication fails due to ENOSPC.Ludovic Courtès
This solves a problem whereby if /gnu/store/.links had enough entries, ext4's directory index would be full, leading to link(2) returning ENOSPC. * nix/libstore/optimise-store.cc (LocalStore::optimisePath_): Upon ENOSPC from link(2), print a message and return instead of throwing a 'SysError'.
2016-10-28daemon: Improve the SQLite wrapper API.Eelco Dolstra
In particular, this eliminates a bunch of boilerplate code. Also integrates these Nix commits: 80da7a6 Probably fix SQLITE_BUSY errors 37a337b throwSQLiteError(): Check for SIGINT so we don't loop forever Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-10-28daemon: Factor out SQLite handling.Eelco Dolstra
* nix/libstore/local-store.cc: Move SQLite code to... * nix/libstore/sqlite.cc, nix/libstore/sqlite.hh: ... here. New files. * nix/local.mk (libstore_a_SOURCES): Add sqlite.cc. (libstore_headers): Add sqlite.hh. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-10-28daemon: Turn retrying SQLite transactions into a higher-order function.Eelco Dolstra
* nix/libstore/local-store.cc (retry_sqlite, end_retry_sqlite): Remove. (retrySQLite): New template. (LocalStore::registerFailedPath, LocalStore::hasPathFailed) (LocalStore::queryFailedPaths, LocalStore::clearFailedPaths) (LocalStore::queryPathInfo, LocalStore::isValidPath_) (LocalStore::queryValidPaths, LocalStore::queryAllValidPaths) (LocalStore::queryReferrers, LocalStore::queryValidDerivers) (LocalStore::queryDerivationOutputs) (LocalStore::queryDerivationOutputNames) (LocalStore::queryPathFromHashPart, LocalStore::registerValidPaths) (LocalStore::invalidatePathChecked): Use it. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-10-28gnu: vim: Update to 8.0.0051.Marius Bakke
* gnu/packages/vim.scm (vim): Update to 8.0.0051. [source]: Change to github release archive.
2016-10-28gnu: python-twobitreader: Update to 3.1.4.Leo Famulari
* gnu/packages/bioinformatics.scm (python-twobitreader, python2-twobitreader): Update to 3.1.4.
2016-10-28gnu: python-twobitreader: Disable the test suite.Leo Famulari
The tests were silently skipped with Python 3.4. With Python 3.5, this caused the build of python-twobitreader to fail. * gnu/packages/bioinformatics.scm (python-twobitreader, python2-twobitreader)[arguments]: Disable the tests.
2016-10-28gnu: Add emacs-org-trello.Roel Janssen
* gnu/packages/emacs.scm (emacs-org-trello): New variable.
2016-10-28gnu: python-wsgiproxy2: Disable the test suite.Leo Famulari
* gnu/packages/python.scm (python-wsgiproxy2, python2-wsgiproxy2)[arguments]: Disable the tests.
2016-10-28gnu: python-beautifulsoup4: Update to 4.5.1.Leo Famulari
* gnu/packages/python.scm (python-beautifulsoup4, python2-beautifulsoup4): Update to 4.5.1.
2016-10-28gnu: python-beautifulsoup4: Run the test suite.Leo Famulari
* gnu/packages/python.scm (python-beautifulsoup4)[arguments]: Add field run python-2 -> python-3 conversion script and test suite. (python2-beautifulsoup4)[arguments]: Specify use of python-2.
2016-10-28gnu: python-feedparser: Disable the test suite.Leo Famulari
The tests were silently skipped with Python 3.4. With Python 3.5, this caused the build of python-feedparser to fail. * gnu/packages/python.scm (python-feedparser, python2-feedparser)[arguments]: Disable the tests.
2016-10-28gnu: libwebp: Fix CVE-2016-9085.Leo Famulari
* gnu/packages/patches/libwebp-CVE-2016-9085.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/image.scm (libwebp)[source]: Use it.
2016-10-28gnu: libwebp: Update to 0.5.1.Leo Famulari
* gnu/packages/image.scm (libwebp): Update to 0.5.1.
2016-10-28gnu: Add emacs-request.Roel Janssen
* gnu/packages/emacs.scm (emacs-request): New variable.
2016-10-28gnu: Add qwt.Thomas Danckaert
* gnu/packages/qt.scm (qwt): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-27gnu: Add r-mutationalpatterns.Roel Janssen
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): New variable.
2016-10-27gnu: jasper: Updat eto 1.900.16.Efraim Flashner
* gnu/packages/image.scm (japer): Update to 1.900.16.
2016-10-27gnu: windowmaker: Add support for more image formats.Kei Kebreau
* gnu/packages/gnustep.scm (windowmaker)[inputs]: Add giflib, libpng, and libtiff.
2016-10-27gnu: r: Use uname from GuixRoel Janssen
* gnu/packages/statistics.scm (r): Use uname from Guix.
2016-10-27gnu: python-urllib3: Update to 1.18.1.Marius Bakke
* gnu/packages/python.scm (python-urllib3): Update to 1.18.1. [home-page]: Use https URL.
2016-10-27tests: Test installation with a RAID root partition.Ludovic Courtès
* gnu/tests/install.scm (%raid-root-os, %raid-root-os-source) (%raid-root-installation-script, %test-raid-root-os): New variables.
2016-10-27file-systems: 'disk-partitions' detected partitions from mapped devices.Ludovic Courtès
Previously, partitions of mdadm- or cryptsetup-produced block devices would not be returned by 'disk-partitions'. * gnu/build/file-systems.scm (disk-partitions)[last-character]: New procedure. [partition?]: Add 'name' parameter and rewrite. Adjust caller. * gnu/build/file-systems.scm (ENOENT-safe): Silently ignore ENOMEDIUM.
2016-10-27tests: Add #:memory-size parameter for the command to run the installed OS.Ludovic Courtès
* gnu/tests/install.scm (qemu-command/writable-image): Add #:memory-size parameter and honor it.
2016-10-27mapped-devices: Use 'mdadm-static' in 'raid-device-mapping'.Ludovic Courtès
* gnu/system/mapped-devices.scm (open-raid-device, close-raid-device): Use MDADM-STATIC instead of MDADM. Use 'file-append'.
2016-10-27gnu: Add mdadm-static.Ludovic Courtès
* gnu/packages/linux.scm (mdadm-static): New variable.
2016-10-27gnu: libmikmod: Update to 3.3.10.Efraim Flashner
* gnu/packages/sdl.scm (libmikmod): Update to 3.3.10.
2016-10-27gnu: sdl2: Update to 2.0.5.Efraim Flashner
* gnu/packages/sdl.scm (sdl2): Update to 2.0.5.
2016-10-27gnu: Use 'https' for libsdl urls.Efraim Flashner
* gnu/packages/sdl.scm (sdl, sdl2, sdl-image, sdl-mixer, sdl-net) (sdl-ttf, sdl2-image, sdl2-ttf)[source]: Use https. [home-page]: Use https.
2016-10-27gnu: mcelog: Update to 144.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (mcelog): Update to 144.
2016-10-27gnu: btrfs-progs: Update to 4.8.2.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.2.
2016-10-27gnu: gnupg: Add support for pcsc-lite.Mike Gerwitz
* gnu/packages/gnupg.scm (gnupg)[inputs]: Add pcsc-lite. [arguments]: Rename phase 'patch-config-files' to 'patch-paths'. Patch `scd/scdaemon.c' with absolute path of libpcsclite.so. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-27gnu: Add pcsc-lite.Mike Gerwitz
* gnu/packages/security-token.scm (pcsc-lite): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-27gnu: Add dbacl.ng0
* gnu/packages/textutils.scm (dbacl): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-27gnu: valgrind: Use 'modify-phases' syntax.Efraim Flashner
* gnu/packages/valgrind.scm (valgrind)[arguments]: Use 'modify-phases' syntax.
2016-10-27gnu: valgrind: Update to 3.12.0.Efraim Flashner
* gnu/packages/valgrind.scm (valgrind): Update to 3.12.0.
2016-10-27gnu: python-pathlib2: Add comment.Hartmut Goebel
As suggested by Efraim Flashner. * gnu/packages/python.scm (python-pathlib2): Add comment.
2016-10-26gnu: shotwell: Update to 0.25.0.Leo Famulari
* gnu/packages/gnome.scm (shotwell): Update to 0.25.0. [inputs]: Add gcr.
2016-10-26gnu: vdirsyncer: Update to 0.14.0.Leo Famulari
* gnu/packages/dav.scm (vdirsyncer): Update to 0.14.0.
2016-10-27tests: Test installation with store on a separate partition.Ludovic Courtès
This is a followup to 0f65f54ebd76324653fd5506a7dab42ee44d9255. * gnu/tests/install.scm (%separate-store-os, %separate-store-os-source) (%separate-store-installation-script, %test-separate-store-os): New variables.
2016-10-27tests: Use #:fallback? #t when building system tests.Ludovic Courtès
* build-aux/run-system-tests.scm (run-system-tests): Pass #:fallback? #t to 'set-build-options*'.
2016-10-27tests: Adjust pypi test to recent importer change.Ludovic Courtès
This is a followup to b5c347ad3d83ee580c111bd14c80b469b0dcb294. * tests/pypi.scm ("pypi->guix-package"): Expect 'propagated-inputs', not 'inputs'. ("pypi->guix-package, wheels"): Likewise.
2016-10-27tests: Skip 'pivot-root' test on Linux > 4.7.5.Ludovic Courtès
* tests/syscalls.scm ("pivot-root"): Skip when 'uname' returns a 'utsname:release' > 4.7.5.
2016-10-26gnu: Add lci.ng0
* gnu/packages/lolcode.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-26gnu: Add autossh.Christopher Allan Webber
* gnu/packages/ssh.scm (autossh): New variable.
2016-10-26gnu: r: Update to 3.3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r): Update to 3.3.1.
2016-10-26gnu: r-matrixstats: Update to 0.51.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.51.0.
2016-10-26gnu: r-r-utils: Update to 2.4.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-r-utils): Update to 2.4.0.
2016-10-26gnu: r-irlba: Update to 2.1.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-irlba): Update to 2.1.2.
2016-10-26gnu: r-codetools: Update to 0.2-15.Ricardo Wurmus
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-15.
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