summaryrefslogtreecommitdiff
AgeCommit message (Collapse)Author
2024-01-30gnu: r-viridis: Update to 0.6.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-viridis): Update to 0.6.5. Change-Id: Iaa83edbc2a304e0327f8815967f2e28b686691a0
2024-01-30gnu: r-commonmark: Update to 1.9.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-commonmark): Update to 1.9.1. Change-Id: Ifccd39448f0d6181bfcede089aa922cd60c5293c
2024-01-30gnu: r-data-table: Update to 1.15.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-data-table): Update to 1.15.0. Change-Id: I2187d368fb461d72b07e3445bad0240ecc5cd6f1
2024-01-30gnu: r-tfruns: Update to 1.5.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-tfruns): Update to 1.5.2. Change-Id: Iefffe073fb7d2d54e190b3d0433dcb760dad9a10
2024-01-30gnu: r-spatstat-geom: Update to 3.2-8.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-geom): Update to 3.2-8. Change-Id: Iab7190ff6dbe409cc1b400f6a69001a8c13ac1bc
2024-01-30gnu: r-iheatmapr: Update to 0.7.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-iheatmapr): Update to 0.7.1. Change-Id: I83046a2d71d29a18dc15a7a568d0212947b936dd
2024-01-30gnu: r-emoa: Update to 0.5-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-emoa): Update to 0.5-2. Change-Id: Ia1138543ad4a2acf104c4fc19e2d75cfa07eed81
2024-01-30gnu: r-tidygraph: Update to 1.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-tidygraph): Update to 1.3.1. Change-Id: I597eaa3eb3afba90462b5ca0a7fed262ecf1aa60
2024-01-30gnu: r-xgboost: Update to 1.7.7.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-xgboost): Update to 1.7.7.1. Change-Id: I949455d58c1fdbb878a77d82e8501c5a615ed441
2024-01-30gnu: r-yulab-utils: Update to 0.1.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.4. Change-Id: Ic7e6288859a857ecbd23566b9e5bd1796206764c
2024-01-30gnu: r-bqtl: Update to 1.0-36.Ricardo Wurmus
* gnu/packages/cran.scm (r-bqtl): Update to 1.0-36. Change-Id: I598ad41402e05e8ed628aaf57eac4a1e47689228
2024-01-30gnu: r-listenv: Update to 0.9.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-listenv): Update to 0.9.1. Change-Id: I998a9d35b176ed8dd038fd6392f46b4052e56dd7
2024-01-30gnu: r-phylobase: Update to 0.8.12.Ricardo Wurmus
* gnu/packages/cran.scm (r-phylobase): Update to 0.8.12. Change-Id: I4d022d85cdb6f79fae167bfd7c52a0c2620b0092
2024-01-30gnu: r-densityclust: Update to 0.3.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-densityclust): Update to 0.3.3. [propagated-inputs]: Remove r-rcpp; add r-cpp11. Change-Id: Ia6b5737e2225e67fa064f031d985c076694ec9ce
2024-01-30gnu: r-interp: Update to 1.1-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-interp): Update to 1.1-6. Change-Id: I846729e1637fc0f8762cf8a235cc78df2c1eb810
2024-01-30gnu: r-zip: Update to 2.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-zip): Update to 2.3.1. Change-Id: I20ff34e492271063d6baf37f59f6da181c1d7805
2024-01-30gnu: r-nestedcv: Update to 0.7.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-nestedcv): Update to 0.7.4. [propagated-inputs]: Add r-rhpcblasctl. Change-Id: Ica97cf7c960125543210c48851861d7826a8f8aa
2024-01-30gnu: r-laeken: Update to 0.5.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-laeken): Update to 0.5.3. Change-Id: I9ab9a89d88511b80efb912119ec81a24fafceb84
2024-01-30gnu: r-sp: Update to 2.1-3.Ricardo Wurmus
* gnu/packages/cran.scm (r-sp): Update to 2.1-3. Change-Id: I111d108e6f144ecfdecf5e5ff94b6b11110a9395
2024-01-30gnu: r-powerlaw: Update to 0.80.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-powerlaw): Update to 0.80.0. Change-Id: I1b3c185ac4a8748698fe9218c262620b42f5f06d
2024-01-30gnu: r-httpuv: Update to 1.6.14.Ricardo Wurmus
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.14. Change-Id: I1f650010cce97020f7b563adfcd74d7e4dec4981
2024-01-30gnu: r-ga: Update to 3.2.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-ga): Update to 3.2.4. Change-Id: I698d5c3eda6598c435fcf37b5e7eaaf5c4e15e63
2024-01-30gnu: r-ggm: Update to 2.5.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggm): Update to 2.5.1. [propagated-inputs]: Add r-biocmanager. Change-Id: I8db7e517b96c3c42cb05246378b4190c9c954a47
2024-01-30gnu: r-rjava: Update to 1.0-11.Ricardo Wurmus
* gnu/packages/cran.scm (r-rjava): Update to 1.0-11. [source]: Remove snippet. [arguments]: Remove 'replace-bundled-minified-JavaScript phase. [native-inputs]: Remove esbuild. Change-Id: I008810b6919412023fc419d9cbadfea0fe2892bb
2024-01-30gnu: r-catdata: Update to 1.2.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-catdata): Update to 1.2.4. [native-inputs]: Add r-knitr. Change-Id: I7e2873a612f114d7124d5787ff70a8bf0ffefe93
2024-01-30gnu: r-r-devices: Update to 2.17.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-r-devices): Update to 2.17.2. [arguments]: Add 'set-HOME phase. [native-inputs]: Add r-r-rsp. Change-Id: Iaaead01e690e95971148ae063aa7af589969d39c
2024-01-30gnu: r-igraph: Update to 2.0.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-igraph): Update to 2.0.1.1. [properties]: Tell updater to keep extra native input "which". [native-inputs]: Add pkg-config and which. Change-Id: Id56c68784d192f7a3031a338fe63a4c17799c605
2024-01-30gnu: r-antiword: Update to 1.3.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-antiword): Update to 1.3.3. [properties]: Tell updater not to remove "antiword" input. [arguments]: Use G-expression. Change-Id: Ifdbf80f546b0ab3abfc3b8002ba01b46c9105a1c
2024-01-30gnu: r-sapa: Patch call of dstebz routine.Ricardo Wurmus
* gnu/packages/patches/r-sapa-lapack.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/cran.scm (r-sapa)[source]: Add it. Change-Id: I17354c4e8b3a0f322e17c9a1e17bc37c93630105
2024-01-30gnu: r-with-tests: Prevent compression of libraries.Ricardo Wurmus
Compression prevents Guix from detecting references. This is a follow-up to commit ff0d34a29bc0f19b1dd2714fc0a3bd73a244aebe. Reported-by: Jonas Freimuth. * gnu/packages/statistics.scm (r-with-tests)[arguments]: Do not compress included libraries like "parallel". Change-Id: I278d19c1504d8ac33a1fc4a941467705a37d574d
2024-01-30gnu: r-minimal, r-with-tests: Use G-expressions.Ricardo Wurmus
* gnu/packages/statistics.scm (r-minimal, r-with-tests)[arguments]: Use G-expressions. Change-Id: I241297444cdb261dfc9901efd73c436a7ccf0acf
2024-01-30gnu: python-scipy: Enable building on more architectures.Efraim Flashner
* gnu/packages/python-science.scm (python-scipy)[propagated-inputs]: Only include python-jupytext on systems where it is supported. Change-Id: Ic085094e4e3977e4c0698e8c03de09ee8e70f144
2024-01-30gnu: libhdate: Fix pkg-config file.Efraim Flashner
* gnu/packages/calendar.scm (libhdate)[source]: Add snippet to adjust the pkg-config file to have the correct prefix. Change-Id: I5273f732a4e4e512057aa8bc1ecd40a81ec7828e
2024-01-30gnu: emacspeak: Update to 59.0.Ian Eure
* gnu/packages/emacs-xyz.scm (emacspeak): Update to 59.0. [source]: Switch to git-fetch. Change-Id: I80e93286fa0de931e85f07c22e050faeaf8d0280 Signed-off-by: Clément Lassieur <clement@lassieur.org>
2024-01-29gnu: Add python-hdbscan.Kiran Shila
* gnu/packages/machine-learning.scm (python-hdbscan): New variable. Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com> Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I13a78dd795490e6d4a8486741e2d5281605b7bb9
2024-01-29gnu: Add python-pyjanitor.Troy Figiel
* gnu/packages/python-science.scm (python-pyjanitor): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-29gnu: Add python-unyt.Troy Figiel
* gnu/packages/python-science.scm (python-unyt): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-29gnu: guile-next: Update to commit fb1f5e2.David Thompson
* gnu/packages/guile.scm (guile-next): Update to commit fb1f5e2. Change-Id: Ia699bf7bf950b8780366146508eec566a738fb80
2024-01-29gnu: mumi: Update to 0.0.8.Maxim Cournoyer
* gnu/packages/mail.scm (mumi): Update to 0.0.8. Change-Id: I0342f3cfb1b257d7beb25a5d9d0732895f88ec35
2024-01-29gnu: mumi: Update to 0.0.7.Maxim Cournoyer
* gnu/packages/mail.scm (mumi): Update to 0.0.7. Change-Id: Ia9280574a6774e27f8ab0b4654997b6518c561d2
2024-01-28gnu: lugaru: Apply patch fixing sound.Maxim Cournoyer
* gnu/packages/patches/lugaru-fix-sound.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/games.scm (lugaru) [source]: Update source URL. Apply patch. [arguments]: Use gexps. [inputs]: Remove labels and sort. Change-Id: Iebefc9fc43d3473e51c8c732539e6aa2f14d9f5f
2024-01-28teams: go: Add more related files to the scope.Sharlatan Hellseher
* etc/teams.scm (go): Add "gnu/packages/configuration-management.scm", "gnu/packages/golang-crypto.scm", "gnu/packages/golang-web.scm", "gnu/packages/syncthing.scm", "gnu/packages/terraform.scm". Sort list alphabetically. Change-Id: I56ce5bd21e487e5dbe2d84aa1d83e3239268fb71
2024-01-28gnu: go-github-com-quic-go-qtls-go1-20: Sort package alphabetically.Sharlatan Hellseher
* gnu/packages/golang-crypto.scm (go-github-com-quic-go-qtls-go1-20): Sort package alphabeticaly to consist the style. Change-Id: Ib9d1e037dc1172b33a80dc4b40c785b53a2a0586
2024-01-28gnu: go-github-com-99designs-go-keyring: Adjust inputs.Sharlatan Hellseher
This package does not use GPG or password-store internally and is only used as a dependency for aws-vault. * gnu/packages/golang-crypto.scm (go-github-com-99designs-go-keyring): Swap native-inputs to propagated-inputs. [propagated-inputs]: Remove gnupg and password-store. Change-Id: If5f57f656402058960df416bad25a76fa1b70718
2024-01-28gnu: go-github.com-smartystreets-goconvey: Move to (gnu packages golang-check).Sharlatan Hellseher
* gnu/packages/check.scm (go-github.com-smartystreets-goconvey): Move from here ... * gnu/packages/golang-check.scm: ... to here. Change-Id: I19d8db6e3b07e1d165396c0498e328b70b2cc760
2024-01-28gnu: go-github.com-smartystreets-assertions: Move to (gnu packages ↵Sharlatan Hellseher
golang-check). * gnu/packages/check.scm (go-github.com-smartystreets-assertions): Move from here ... * gnu/packages/golang-check.scm: ... to here. Change-Id: Ia90bbe984fe19dd48d9df91364a7ecf2bf8bd37f
2024-01-28gnu: go-github.com-smartystreets-gunit: Move to (gnu packages golang-check).Sharlatan Hellseher
* gnu/packages/check.scm (go-github.com-smartystreets-gunit): Move from here ... * gnu/packages/golang-check.scm: ... to here. Change-Id: I7204e118f99064027f0e10838d2b44fee212d21d
2024-01-28gnu: go-github-com-dvsekhvalnov-jose2go: Move to (gnu packages golang-crypto).Sharlatan Hellseher
* gnu/packages/golang.scm (go-github-com-dvsekhvalnov-jose2go): Move from here ... * gnu/packages/golang-crypto.scm: ... to here. Change-Id: I4c368c9005fd079078726b9165dff380b5092405
2024-01-28gnu: go-filippo-io-age: Move to (gnu packages golang-crypto).Sharlatan Hellseher
* gnu/packages/golang.scm (go-filippo-io-age): Move from here ... * gnu/packages/golang-crypto.scm: ... to here. Change-Id: I4eeadfd946910d56d2441a3469967d681b9e8677
2024-01-28gnu: go-github-com-xanzy-ssh-agent: Move to (gnu packages golang-crypto).Sharlatan Hellseher
* gnu/packages/golang.scm (go-github-com-xanzy-ssh-agent): Move from here ... * gnu/packages/golang-crypto.scm: ... to here. Change-Id: I9eff26086b2b5e9e53e9271a64060f18b6197b3c