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2019-02-07gnu: hdf5: Remove use of deprecated MPI1 symbols.Eric Bavier
* gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch, gnu/packages/patches/hdf5-mpi-deprecations.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/maths.scm (hdf5, hdf5-1.10)[source]: Use them.
2019-02-07gnu: superlu-dist: Remove use of deprecated MPI1 symbols.Eric Bavier
* gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (superlu-dist)[source]: Use it.
2019-02-07gnu: emacs-fish-completion: Update to 1.0.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-fish-completion): Update to 1.0.
2019-02-07gnu: Add gpx.Tim Stahel
* gnu/packages/engineering.scm (gpx): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-02-07gnu: Add dune-geometry.Ricardo Wurmus
* gnu/packages/maths.scm (dune-geometry): New variable.
2019-02-07gnu: Add dune-common.Ricardo Wurmus
* gnu/packages/maths.scm (dune-common): New variable.
2019-02-07gnu: Add coq-autosubstDan Frumin
* gnu/packages/coq.scm (coq-autosubst): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-02-07gnu: libxslt: Update to 1.1.33.Marius Bakke
* gnu/packages/xml.scm (libxslt): Update to 1.1.33.
2019-02-07gnu: libxml2: Update to 2.9.9.Marius Bakke
* gnu/packages/xml.scm (libxml2): Update to 2.9.9.
2019-02-07gnu: openssl: Update to 1.0.2q.Marius Bakke
* gnu/packages/tls.scm (openssl): Update to 1.0.2q.
2019-02-07gnu: python: Update to 3.7.2.Marius Bakke
* gnu/packages/python.scm (python-3.7): Update to 3.7.2.
2019-02-07gnu: pcre2: Update to 10.32.Marius Bakke
* gnu/packages/pcre.scm (pcre2): Update to 10.32.
2019-02-07gnu: mit-krb5: Update to 1.17.Marius Bakke
* gnu/packages/kerberos.scm (mit-krb5): Update to 1.17.
2019-02-07gnu: libpng: Update to 1.6.36.Marius Bakke
* gnu/packages/image.scm (libpng): Update to 1.6.36.
2019-02-07gnu: binutils: Update to 2.32.Marius Bakke
* gnu/packages/base.scm (binutils): Update to 2.32.
2019-02-07gnu: mpfr: Update to 4.0.2.Marius Bakke
* gnu/packages/multiprecision.scm (mpfr): Update to 4.0.2.
2019-02-07gnu: bison: Update to 3.3.2.Marius Bakke
* gnu/packages/bison.scm (bison): Update to 3.3.2.
2019-02-07gnu: libarchive: Remove graft for 3.3.3.Marius Bakke
* gnu/packages/patches/libarchive-CVE-2017-14166.patch, gnu/packages/patches/libarchive-CVE-2017-14502.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/backup.scm (libarchive): Update to 3.3.3. [source](patches): Adjust for 3.3.3. [replacement]: Remove field. (libarchive-3.3.3): Remove variable.
2019-02-07gnu: python2: Incorporate grafted changes.Marius Bakke
* gnu/packages/python.scm (python-2.7)[source](patches): Add python2-CVE-2018-14647.patch and python2-CVE-2018-1000802.patch. [replacement]: Remove field. (python-2/fixed): Remove variable.
2019-02-07gnu: sqlite: Remove graft for 3.26.0.Marius Bakke
* gnu/packages/sqlite.scm (sqlite): Update to 3.26.0. [replacement]: Remove. (sqlite-3.26.0): Remove variable.
2019-02-07gnu: file: Incorporate grafted changes.Marius Bakke
* gnu/packages/file.scm (file)[replacement]: Remove. [source](patches): New field. (file/fixed): Remove variable.
2019-02-07gnu: linux-libre: Update to 4.20.7.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.7. (%linux-libre-hash): Update hash.
2019-02-07gnu: linux-libre@4.19: Update to 4.19.20.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.20. (%linux-libre-4.19-hash): Update hash.
2019-02-07gnu: linux-libre@4.14: Update to 4.14.98.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.98. (%linux-libre-4.14-hash): Update hash.
2019-02-07gnu: linux-libre@4.9: Update to 4.9.155.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.155.
2019-02-07gnu: linux-libre@4.4: Update to 4.4.173.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.173.
2019-02-07gnu: Add emacs-redshank.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-redshank): New variable.
2019-02-07status: Do not systematically erase the previous line.Ludovic Courtès
After a successful download, we'd erase the download-progress line, and the end result would be two empty lines following the "downloading …" line. Reported by Ricardo Wurmus <rekado@elephly.net> at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=33470#27>. * guix/status.scm (print-build-event)[erase-current-line*]: Set to a no-op when PRINT-LOG? is true. Move calls to 'erase-current-line*' to the 'build-succeeded' and 'build-failed' events.
2019-02-07doc: Mention flag to get an ISO image.Ludovic Courtès
* doc/guix.texi (Building the Installation Image): Add '--file-system-type=iso9660'.
2019-02-07gnu: openmpi: Add dependency on SLURM.Ludovic Courtès
This allows users to run Open MPI programs with 'srun'. * gnu/packages/mpi.scm (openmpi)[inputs]: Add SLURM. [arguments]: Add "--with-pmi" to #:configure-flags.
2019-02-07profiles: Raise an error for unmatched patterns.Ludovic Courtès
Previously, "guix package -r something-not-installed" would silently complete. Now an error is raised. * guix/profiles.scm (&unmatched-pattern-error): New condition type. (manifest-matching-entries): Rewrite to raise an error when one of PATTERNS is not matched. * guix/ui.scm (call-with-error-handling): Handle 'unmatched-pattern-error?'. * tests/guix-package.sh: Add test. * tests/profiles.scm ("manifest-matching-entries"): Don't try to remove unmatched pattern. ("manifest-matching-entries, no match"): New test. ("manifest-transaction-effects"): Remove 'remove' field.
2019-02-07gnu: flatpak: Update to 1.2.0.Rutger Helling
* gnu/packages/package-management.scm (flatpak): Update to 1.2.0.
2019-02-07gnu: python2-rope: Update to 0.11.0Brett Gilio
From 1e6322de0c3227827176fb460a11da21a6bba08d Mon Sep 17 00:00:00 2001 From: Brett Gilio <brettg@posteo.net> Date: Wed, 6 Feb 2019 15:23:56 -0600 Subject: [PATCH] gnu: python2-rope: Update to 0.11.0 * gnu/packages/python-xyz.scm (python2-rope): Update to 0.11.0
2019-02-07gnu: python-configargparse: Update to 0.14.0.Vagrant Cascadian
* gnu/packages/python-xyz.scm (python-configargparse): Update to 0.14.0.
2019-02-07gnu: python-wheel: Update to 0.32.2.Vagrant Cascadian
* gnu/packages/python-xyz.scm (python-wheel): Update to 0.32.2.
2019-02-06gnu: mariadb: Add comments about failing tests.Marius Bakke
* gnu/packages/databases.scm (mariadb): Add comments.
2019-02-06gnu: Add datefudge.Kyle Meyer
* gnu/packages/time.scm (datefudge): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-02-06gnu: iproute2: Update to 4.20.0.Ludovic Courtès
* gnu/packages/linux.scm (iproute): Update to 4.20.0.
2019-02-06monads, gexp: Prevent redefinition of syntax parameters.Ludovic Courtès
Fixes <https://bugs.gnu.org/27476>. This fixes multi-threaded compilation of this code where syntax parameters could end up being redefined and where a race condition could lead a thread to see the "wrong" value of the syntax parameter. * guix/monads.scm (define-syntax-parameter-once): New macro. (>>=, return): Use it. * guix/gexp.scm (define-syntax-parameter-once): New macro. (current-imported-modules, current-imported-extensions): Use it.
2019-02-06daemon: Emit a 'build-succeeded' event in check mode.Ludovic Courtès
Until now, something like "guix build sed -v1 --check" would not get a 'build-succeeded' event, which in turn meant that the spinner would not be erased upon build completion. * nix/libstore/build.cc (DerivationGoal::registerOutputs): When 'buildMode' is bmCheck and 'settings.printBuildTrace' emit a "@ build-succeeded" trace upon success. * tests/store.scm ("build-succeeded trace in check mode"): New test.
2019-02-06gnu: abcde: Update to 2.9.3.Kei Kebreau
* gnu/packages/cdrom.scm (abcde): Update to 2.9.3. [source]: Update snippet.
2019-02-06gnu: star: Update to 2.7.0b.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (star): Update to 2.7.0b. [arguments]: Add "add-missing-header" build phase.
2019-02-06gnu: wxmaxima: Update to 19.01.3.Kei Kebreau
* gnu/packages/maths.scm (wxmaxima): Update to 19.01.3.
2019-02-06gnu: maxima: Update to 5.42.2.Kei Kebreau
* gnu/packages/maths.scm (maxima): Update to 5.42.2.
2019-02-06gnu: emacs-lispyville: Update to 20181217.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-lispyville): Update to 20181217.
2019-02-06gnu: emacs-lispy: Update to 20190205.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-lispy): Update to 20190205.
2019-02-06gnu: emacs-evil-collection: Update to 20190206.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 20190206.
2019-02-06gnu: emacs-evil: Update to 1.2.14.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-evil): Update to 1.2.14.
2019-02-06doc: Raise subsections.Ricardo Wurmus
* doc/guix.texi (Reduced Binary Seed Bootstrap, Preparing to Use the Bootstrap Binaries): Raise subsections.
2019-02-06gnu: Add guile-squee.Christopher Baines
* gnu/packages/guile-xyz.scm (guile-squee): New variable.
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