Age | Commit message (Collapse) | Author |
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* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.16.0.
[inputs]: Remove netcdf.
[propagated-inputs]: Add r-ncdf4.
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* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.0.
[source]: Add snippet to remove bundled binaries.
[arguments]: Replace references to hdf5 with references to hdf5-1.10.
[native-inputs]: Likewise.
[propagated-inputs]: Replace hdf5 with hdf5-1.10.
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* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.10.0.
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* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.26.0.
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* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.8.0.
[native-inputs]: Remove r-testthat and ghc-pandoc-citeproc.
[propagated-inputs]: Add r-annotationdbi, r-genomeinfodb, and r-genomicranges;
remove r-bsgenome-mmusculus-ucsc-mm9, r-bsgenome-celegans-ucsc-ce10,
r-bsgenome-dmelanogaster-ucsc-dm3, r-org-ce-eg-db, r-org-dm-eg-db, and
r-org-mm-eg-db.
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* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.4.0.
[propagated-inputs]: Add r-biocparallel and r-hdf5array.
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* gnu/packages/bioinformatics.scm (r-scran): Update to 1.10.1.
[propagated-inputs]: Add r-biocneighbors; remove r-dt, r-fnn, r-ggplot2,
r-shiny, and r-viridis.
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* gnu/packages/bioinformatics.scm (r-scater): Update to 1.10.0.
[propagated-inputs]: Add r-biocparallel; remove r-biobase, r-data-table,
r-edger, r-limma, r-rhdf5, r-rjson, r-shiny, r-shinydashboard, and r-tximport.
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* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.4.0.
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* gnu/packages/bioinformatics.scm (r-beachmat): Update to 1.4.0.
[propagated-inputs]: Add r-biocgenerics.
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* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.14.0.
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* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.26.0.
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* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.8.0.
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* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.20.0.
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* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.14.0.
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* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.0.
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* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.14.0.
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* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.12.0.
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* gnu/packages/bioinformatics.scm (r-erma): Update to 0.14.0.
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* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.32.0.
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* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.14.0.
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* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.30.0.
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* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.30.0.
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* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.24.0.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
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* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.0.
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* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.24.0.
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* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 1.20.0.
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* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-gage): Update to 2.32.0.
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* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.28.0.
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* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.1.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
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* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.20.0.
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* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.16.0.
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* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.34.0.
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* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.12.0.
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* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.16.0.
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* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.8.0.
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* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.74.0.
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* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.20.0.
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* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.50.0.
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* gnu/packages/bioinformatics.scm (r-affy): Update to 1.60.0.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
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* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.52.0.
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* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.14.0.
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* gnu/packages/bioinformatics.scm (r-sva): Update to 3.30.0.
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* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.8.0.
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* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.14.0.
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* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.32.0.
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* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.6.0.
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* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.10.0.
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