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2019-12-13gnu: hdf5@1.10: Update to 1.10.5.Ludovic Courtès
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5. Remove "hdf5-mpi-deprecations.patch". * gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-13Merge branch 'master' into stagingBrett Gilio
2019-12-12gnu: libnftnl: Update to 1.1.5.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (libnftnl): Update to 1.1.5. [source]: Add patch. * gnu/packages/patches/libnftnl-dont-check-NFTNL_FLOWTABLE_SIZE.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-12-11gnu: pcre2: Update to 10.34.Marius Bakke
* gnu/packages/patches/pcre2-fix-jit_match-crash.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/pcre.scm (pcre2): Update to 10.34. [source](patches): Remove.
2019-12-11gnu: nss: Remove replacement package.Marius Bakke
The merge preceding this commit ignored the 'replacement' added to nss in commit 04b33ce205f38813b4dbd04b6ad3c7aa0be0b6f6, because the security fix is already present in NSS 3.48. This commit removes the remaining bits. * gnu/packages/patches/nss-CVE-2019-11745.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/nss.scm (nss/fixed): Remove variable.
2019-12-11Merge branch 'master' into stagingMarius Bakke
2019-12-11gnu: nss: Fix CVE-2019-11745 via graft.Mark H Weaver
* gnu/packages/patches/nss-CVE-2019-11745.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/nss.scm (nss/fixed): New variable. (nss)[replacement]: Add field.
2019-12-11gnu: orc: Update to 0.4.31.Marius Bakke
* gnu/packages/patches/orc-typedef-enum.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/gstreamer.scm (orc): Update to 0.4.31. [source](patches): Remove.
2019-12-11gnu: mesa: Update to 19.2.7.Marius Bakke
* gnu/packages/patches/mesa-timespec-test-32bit.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/gl.scm (mesa): Update to 19.2.7. [source](patches): Remove obsolete.
2019-12-09gnu: guile: Add 2.2.6-1 with a finalization crash bug-fix.Ludovic Courtès
* gnu/packages/patches/guile-finalization-crash.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/guile.scm (guile-2.2/bug-fix): New variable.
2019-12-09gnu: websocketpp: Add patch for Boost >= 1.70.Guillaume Le Vaillant
* gnu/packages/patches/websocket-fix-for-boost-1.70.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/web.scm (websocketpp): Use it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-12-08gnu: stumpwm: Remove obsolete patch.Evan Straw
* gnu/local.mk (stumpwm-fix-broken-read-one-line.patch): Remove obsolete. Co-authored-by: Brett Gilio <brettg@posteo.net> Signed-off-by: Brett Gilio <brettg@posteo.net>
2019-12-09gnu: ruby-safe-yaml: Update to 1.0.5.Björn Höfling
* gnu/packages/ruby.scm(ruby-save-yaml): Update to 1.0.5. * gnu/packages/patches/ruby-safe-yaml-add-require-time.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-08gnu: glusterfs: Update to 7.0Andrew Miloradovsky
* gnu/packages/file-systems.scm (glusterfs): Update to 7.0. [source]: Update URL. [arguments]: Add "PYTHON=" and"--enable-cmocka" configure flags. Remove 'replace-config.sub and 'fix-lex phases. Add 'autogen. [native-inputs]: Add libtirpc, rpcsvc-proto, autoconf, automake, and libtool. [inputs]: Add fuse, libaio, and rdma-core. Remove lvm2 and sqlite. * gnu/packages/patches/glusterfs-use-PATH-instead-of-hardcodes.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-12-07gnu: python-pyatspi: Update to 2.32.1.Kei Kebreau
* gnu/packages/gnome.scm (python-pyatspi): Update to 2.32.1. [source]: Remove patch. * gnu/packages/patches/python-pyatspi-python-37.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-07gnu: totem: Update to 3.32.1.Kei Kebreau
* gnu/packages/gnome.scm (totem): Update to 3.32.1. [source]: Remove patches. [arguments]: Add 'pre-check' phase. Remove #:parallel-build?. [native-inputs]: Add python-pylint and xorg-server-for-tests. [inputs]: Replace python2-pygobject with python-pygobject. * gnu/packages/patches/totem-meson-easy-codec.patch, gnu/packages/patches/totem-meson-compat.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2019-12-07gnu: gnome-control-center: Update to 3.32.2.Kei Kebreau
* gnu/packages/gnome.scm (gnome-control-center): Update to 3.32.2. [source]: Remove patch. [arguments]: Adjust 'patch-paths' phase accordingly. [native-inputs]: Add hicolor-icon-theme, python-dbusmock and xorg-server-for-tests. [inputs]: Add gnome-session and gsound. * gnu/packages/patches/gnome-control-center-udisks.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove patch.
2019-12-07gnu: mes: Add patch to remove store name from binary.Jan Nieuwenhuizen
* gnu/packages/patches/mes-remove-store-name.patch: New file, from upstream. * gnu/packages/mes.scm (mes): Use it. Add `www.' to homepage. * gnu/local.mk (dist_patch_DATA): Add it.
2019-12-06gnu: Add ncompress.Jan Nieuwenhuizen
* gnu/packages/compression.scm (ncompress): New variable. * gnu/packages/patches/compress-fix-softlinks.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-12-05gnu: Really move lisp libraries to lisp-xyz, uglify-js to javascript and ↵Pierre Neidhardt
stumpwm to wm. * gnu/local.mk: Include lisp-xyz.scm. * gnu/packages/lisp-xyz.scm: New file. * gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to javascript.scm and stumpwm to wm.scm. * gnu/packages/javascript.scm: Add uglify-js. * gnu/packages/wm.scm: Add stumpwm. * gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm. * gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm. * gnu/packages/web.scm: Find uglify-js in javascript.scm. * gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm. * guix/build-system/minify.scm (default-uglify-js): Find uglify-js in javascript module instead of lisp.
2019-12-05Revert "gnu: Properly move lisp libraries to lisp-xyz, uglify-js to ↵Tobias Geerinckx-Rice
javascript and stumpwm to wm." This reverts commit ac1ee30f4f7f9d0ae2a655676b0e8b9eb90a35dd, which still breaks ‘guix pull’.
2019-12-05gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascript and ↵Pierre Neidhardt
stumpwm to wm. * gnu/local.mk: Include lisp-xyz.scm. * gnu/packages/lisp-xyz.scm: New file. * gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to javascript.scm and stumpwm to wm.scm. * gnu/packages/javascript.scm: Add uglify-js. * gnu/packages/wm.scm: Add stumpwm. * gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm. * gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm. * gnu/packages/web.scm: Find uglify-js in javascript.scm. * gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm. * guix/build-system/minify.scm (default-uglify-js): Find uglify-js in javascript module instead of lisp.
2019-12-04gnu: libjpeg-turbo: Fix CVE-2019-13960 and CVE-2019-2201.Marius Bakke
* gnu/packages/patches/libjpeg-turbo-CVE-2019-2201.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/image.scm (libjpeg-turbo/fixed): New variable. (libjpeg-turbo)[replacement]: New field.
2019-12-04gnu: feh: Update to 3.3.Marius Bakke
* gnu/packages/patches/feh-fix-tests-for-imlib2-1.6.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/image-viewers.scm (feh): Update to 3.3. [source](patches): Remove.
2019-12-04Merge branch 'staging'Marius Bakke
2019-12-04gnu: icecat: Update to 68.3.0-guix0-preview1 [security fixes].Mark H Weaver
Includes fixes for CVE-2019-11745, CVE-2019-17005, CVE-2019-17008, CVE-2019-17009, CVE-2019-17010, CVE-2019-17011, and CVE-2019-17012. * gnu/packages/patches/icecat-gnuzilla-fixes.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update hash for the firefox source tarball. Update to the latest from gnuzilla.git. Don't apply icecat-gnuzilla-fixes.patch. Remove determinism fix in makeicecat that is now upstream. Tweak a status message. (icecat)[arguments]: Add "--with-unsigned-addon-scopes=app" configure flag. * gnu/packages/patches/icecat-makeicecat.patch: Adapt.
2019-12-03gnu: handbrake: Upgrade to 1.3.0.Eric Bavier
* gnu/packages/patches/handbrake-opt-in-nvenc.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/video.scm (handbrake)[source]: Upgrade to 1.3.0. Remove patch. [native-inputs]: Remove cmake and curl. [inputs]: Add dav1d and numactl. [arguments]: Add "--disable-nvenc" to configure flags in place of patch. Adjust "bootstrap" phase in response to upstream changes. Add "patch-SHELL" and "relax-reqs" phases.
2019-12-03gnu: pugixml: Update to 1.10.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (pugixml): Update to 1.10. [source]: Remove obsolete patch. * gnu/packages/patches/pugixml-versioned-libdir.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-02gnu: python-scikit-image: Move to (gnu packages python-science).Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-scikit-image, python2-scikit-image): Move these two from here... * gnu/packages/python-science.scm: ...to this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2019-12-01gnu: thermald: Update to 1.9.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (thermald): Update to 1.9. [source]: Remove patch. * packages/patches/thermald-make-int-max32-visible.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-01gnu: fcgi: Update to 2.4.2.Tobias Geerinckx-Rice
* gnu/packages/web.scm (fcgi): Update to 2.4.2. [source]: Use GIT-FETCH and GIT-FILE-NAME. Remove obsolete patches. [native-inputs]: Add autoconf, automake, and libtool. * gnu/packages/patches/fcgi-2.4.0-gcc44-fixes.patch, gnu/packages/patches/fcgi-2.4.0-poll.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
2019-11-30gnu: retroarch: Disable the on-line updater.Tobias Geerinckx-Rice
Addresses <http://issues.guix.gnu.org/issue/38360>. * gnu/packages/emulators.scm (retroarch)[source]: Add patch and snippet. * packages/patches/retroarch-disable-online-updater.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-11-30gnu: ocaml-piqilib: Update to 0.6.15.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-piqilib): Update to 0.6.15. [source]: Remove patch. [native-inputs]: Remove camlp4. [propagated-inputs]: Replace ulex with sedlex. * gnu/packages/patches/ocaml-piqilib-Update-base64.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-11-29gnu: openmpi: Increase priority of the PSM component.Ludovic Courtès
* gnu/packages/patches/openmpi-psm2-priority.patch: Rename to... * gnu/packages/patches/openmpi-mtl-priorities.patch: ... this. Add hunk to change the priority of PSM. * gnu/packages/mpi.scm (openmpi)[source]: Adjust accordingly. * gnu/local.mk (dist_patch_DATA): Likewise.
2019-11-29gnu: xinetd: Update to 2.3.15.4 [fix build].Tobias Geerinckx-Rice
* gnu/packages/web.scm (xinetd): Update to 2.3.15.4. [source]: Switch to openSUSE (and Debian) maintenance fork. Remove obsolete patches. [native-inputs]: Add automake, autoconf, libtool, and pkg-config. [home-page]: Update. * gnu/packages/patches/xinetd-CVE-2013-4342.patch, gnu/packages/patches/xinetd-fix-fd-leak.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
2019-11-28Revert "gnu: Move lisp libraries to lisp-xyz, uglify-js to javascript and ↵Ricardo Wurmus
stumpwm to wm." This reverts commit abf43a67d5929bf279edce3e790ef1348dda32a5 as it broke "guix pull".
2019-11-28gnu: Move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm.Pierre Neidhardt
* gnu/local.mk: Include lisp-xyz.scm. * gnu/packages/lisp-xyz.scm: New file. * gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to javascript.scm and stumpwm to wm.scm. * gnu/packages/javascript.scm: Add uglify-js. * gnu/packages/wm.scm: Add stumpwm. * gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm. * gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm. * gnu/packages/web.scm: Find uglify-js in javascript.scm. * gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm.
2019-11-28gnu: psm: Disable memory statistics code.Ludovic Courtès
* gnu/packages/patches/psm-disable-memory-stats.patch: New file. * gnu/packages/linux.scm (psm)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2019-11-28Merge branch 'master' into stagingMarius Bakke
2019-11-28services: Add pam-mount.Guillaume Le Vaillant
* gnu/services/pam-mount.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * doc/guix.texi (PAM Mount Service): New subsection. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-11-28Merge branch 'master' into stagingMarius Bakke
2019-11-28gnu: feh: Adapt tests for imlib2 1.6.Pierre Langlois
* gnu/packages/patches/feh-fix-tests-for-imlib2-1.6.patch: New file. * gnu/packages/image-viewers.scm (feh)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-11-26gnu: Add pam-mount.Guillaume Le Vaillant
* gnu/packages/admin.scm (pam-mount): New variable. * gnu/packages/patches/pam-mount-luks2-support.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-11-22gnu: xsane: Fix snprintf buffer length.Tobias Geerinckx-Rice
* gnu/packages/scanner.scm (xsane)[source]: Add patch. * gnu/packages/patches/xsane-fix-snprintf-buffer-length.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-11-22gnu: Register xsane patches.Tobias Geerinckx-Rice
This follows up on commit a608666d74f156819cecfabaf72290726d7964e6. * gnu/local.mk (dist_patch_DATA): Add missing patches.
2019-11-22gnu: libseccomp: Fix build on AArch64.Ludovic Courtès
This is a followup to d100d5d5449eabd65e9c26081b7620a3d342c9eb. * gnu/packages/patches/libseccomp-open-aarch64.patch: New file. * gnu/packages/linux.scm (libseccomp)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2019-11-21Merge branch 'master' into stagingMarius Bakke
2019-11-21gnu: hexchat: Fix crash on exit.Julien Lepiller
* gnu/packages/patches/hexchat-crash-exit.patch: New file. * gnu/packages/hexchat.scm (orgin): Add patch. * gnu/local.mk (dist_patch_DATA): Add it.
2019-11-20gnu: ghc-haddock-api: Update to 2.22.0.Timothy Sample
* gnu/packages/patches/ghc-haddock-api-fix-haddock.patch: New file. * gnu/local.mk: Add it. * gnu/packages/haskell-xyz.scm (ghc-haddock-api): Update to 2.22.0. [source]: Use the new patch. [arguments]: Change the 'update-constraints' phase to allow newer versions of 'QuickCheck' and 'hspec'.
2019-11-20gnu: elm-compiler: Fix Cabal dependency constraints.Timothy Sample
This package used a patch to update the Cabal version constraints for 'language-glsl'. This is now done in a phase for consistency with other Haskell packages. * gnu/packages/elm.scm (elm-compiler): Add a phase that updates the Cabal file to allow for newer versions of 'ansi-terminal', 'containers', 'http-client', 'language-glsl', and 'network'. [source]: Remove 'elm-compiler-relax-glsl-bound.patch'. * gnu/packages/patches/elm-compiler-relax-glsl-bound.patch: Delete file. * gnu/local.mk: Remove it.
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