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2020-01-07gnu: appstream-glib: Fix test failure.Marius Bakke
* gnu/packages/patches/appstream-glib-2020.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/glib.scm (appstream-glib)[source](patches): New field.
2020-01-07gnu: Ceph: Update to 14.2.5.Marius Bakke
This also removes test-specific code to ease the Python 3 transition, and because it is mostly obsolete. * gnu/packages/patches/ceph-detect-rocksdb.patch, gnu/packages/patches/ceph-skip-unittest_blockdev.patch, gnu/packages/patches/ceph-skip-collect-sys-info-test.patch: Delete files. * gnu/packages/patches/ceph-boost-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/storage.scm (ceph): Update to 14.2.5. [source](patches): Adjust as above. [source](snippet): Remove bundled "fmt", "c-ares" and "googletest". [arguments]: Add "-DCMAKE_INSTALL_DATADIR" and "-DWITH_RADOSGW_AMQP_ENDPOINT" and "-DWITH_TESTS" in #:configure-flags; remove "-DWITH_XIO". Remove obsolete substitutions. Don't install 'ceph-disk' and 'ceph-detect-init', which no longer exists. Remove test-specific substitutions and phases. Adjust for Python 2->3 in inputs. [native-inputs]: Remove INETUTILS, JQ, PERL, XMLSTARLET, PYTHON2-CRAM, PYTHON2-VIRTUALENV, PYTHON2-CONFIGOBJ, PYTHON2-COVERAGE, PYTHON2-DISCOVER, PYTHON2-FLAKE8, PYTHON2-MOCK, PYTHON2-NOSE, PYTHON2-PIP, PYTHON2-PYTEST, PYTHON2-SUBUNIT PYTHON2-TESTREPOSITORY, PYTHON2-TESTTOOLS, and PYTHON2-TOX. [inputs]: Change from BOOST to BOOST-WITH-PYTHON3. Remove GPTFDISK, PARTED, PYTHON-2, PYTHON2-SIX, PYTHON2-PRETTYTABLE, and PYTHON-3. Add PYTHON-SIX, PYTHON-PRETTYTABLE, PYTHON-WRAPPER, LIBCAP-NG, LIBNL, NCURSES, and RDMA-CORE.
2020-01-07Merge branch 'staging'Marius Bakke
2020-01-05gnu: libtgvoip: Fix failing build on i686-linux.Brett Gilio
* gnu/local.mk (libtgvoip): Add patches for libtgvoip-disable-sse2.patch and libtgvoip-disable-webrtc.patch * gnu/packages/patches/libtgvoip-disable-sse2.patch: New file. * gnu/packages/patches/libtgvoip-disable-webrtc.patch: New file. * gnu/packages/telephony.scm (libtgvoip): Fix building on i686-linux. [source]: Reference patches for correcting failing build on i686-linux architecture. Reported-by: Diego Nicola Barbato <dnbarbato@posteo.de> Fixes <bugs.gnu.org/38944>.
2020-01-04gnu: Add cogutil.Ricardo Wurmus
* gnu/packages/opencog.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2020-01-04gnu: nfs-utils: Update to 2.4.2.Ricardo Wurmus
* gnu/packages/nfs.scm (nfs-utils): Update to 2.4.2. [source]: Remove patch. [arguments]: Update configure flags, remove fix-glibc-compatability phase, update substitutions. [inputs]: Add keyutils and rpcsvc-proto. * gnu/packages/patches/nfs-utils-missing-headers.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-01-03gnu: Rename module gprolog to prolog.Brett Gilio
* gnu/local.mk (GNU_SYSTEM_MODULES): Replace gprolog.scm => prolog.scm. * gnu/packages/{gprolog.scm -> prolog.scm}: Rename file so it is not implementation specific.
2020-01-03gnu: Add lean.Amin Bandali
* gnu/local.mk (GNU_SYSTEM_MODULES): Add lean.scm. * gnu/packages/lean.scm: New file. Signed-off-by: Brett Gilio <brettg@gnu.org>
2020-01-03Merge branch 'master' into stagingMarius Bakke
2020-01-03gnu: hexchat: Update to 2.14.3.Tobias Geerinckx-Rice
* gnu/packages/messaging.scm (hexchat): Update to 2.14.3. [source]: Remove patch. * gnu/packages/patches/hexchat-crash-exit.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-01-02gnu: rust-cbindgen: Move to rust-apps.scmEfraim Flashner
* gnu/packages/rust-cbindgen.scm (rust-cbindgen): Move to ... * gnu/packages/rust-apps.scm: ... here. * gnu/local.mk (GNU_SYSTEM_MODULES): Remove it.
2020-01-02gnu: Add ripgrep.John Soo
* gnu/packages/rust-apps.scm (ripgrep): New variable. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-12-31gnu: Add jfsutils.Tobias Geerinckx-Rice
* gnu/packages/file-systems.scm (jfsutils): New public variable.
2019-12-28gnu: Add ardupilot.Mathieu Othacehe
* gnu/local.mk (GNU_SYSTEM_MODULES): Add drones.scm. * gnu/packages/drones.scm: New file.
2019-12-26gnu: Add kmplayer.Hartmut Goebel
`guix lint` reports two CVEs, both are unrelated: - CVE-2018-5200: for vendor "pandora" and some 4.2.2.x version - CVE-2019-9133: windows only (I assume it it alsow relates to the "pandora" vendor, since the version the CVE refers to as "solving the issue" does not exist at KDE.) * gnu/packages/kde-multimedia.scm (kmplayer): New variable. * gnu/packages/patches/kmplayer-aarch64.patch, gnu/packages/patches/kmplayer-upstream_Fix-build-with-Qt-5.9.patch: New files. * gnu/local.mk: Add them.
2019-12-26gnu: Add dragon.Hartmut Goebel
* gnu/packages/kde-multimedia.scm: New file. * gnu/lokal.mk (MODULES): Add it.
2019-12-26gnu: Add audiofile.Hartmut Goebel
Patches should fix all CVEs reported by `guix lint`: CVE-2015-7747; CVE-2017-6827, CVE-2017-6828, CVE-2017-6829, CVE-2017-6830, CVE-2017-6831, CVE-2017-6832, CVE-2017-6833, CVE-2017-6834, CVE-2017-6835, CVE-2017-6836, CVE-2017-6837, CVE-2017-6838, CVE-2017-6839; CVE-2018-13440; CVE-2018-17095 Since the patches do not reference to CVEs, it's a bit hard to tell which patch actually closes which CVE. Debian reports all these to be closed by the patches below and NixPkgs provides references. * gnu/packages/audio.scm (audiofile): New variable. * gnu/packages/patches/audiofile-fix-datatypes-in-tests.patch, gnu/packages/patches/audiofile-fix-sign-conversion.patch, gnu/packages/patches/audiofile-CVE-2015-7747.patch, gnu/packages/patches/audiofile-CVE-2018-13440.patch, gnu/packages/patches/audiofile-CVE-2018-17095.patch, gnu/packages/patches/audiofile-Check-the-number-of-coefficients.patch, gnu/packages/patches/audiofile-Fail-on-error-in-parseFormat.patch, gnu/packages/patches/audiofile-Fix-index-overflow-in-IMA.cpp.patch, gnu/packages/patches/audiofile-Fix-multiply-overflow-sfconvert.patch, gnu/packages/patches/audiofile-Fix-overflow-in-MSADPCM-decodeSam.patch, gnu/packages/patches/audiofile-division-by-zero-BlockCodec-runPull.patch, gnu/packages/patches/audiofile-hurd.patch, gnu/packages/patches/audiofile-signature-of-multiplyCheckOverflow.patch: New files. * gnu/local.mk: Add them.
2019-12-26gnu: libgeotiff: Update to 1.5.1.Arun Isaac
* gnu/packages/patches/libgeotiff-adapt-test-script-for-proj-6.2.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/geo.scm (libgeotiff): Update to 1.5.1. [inputs]: Replace proj.4 with proj. [sources]: Add libgeotiff-adapt-test-script-for-proj-6.2.patch to patches.
2019-12-25gnu: Add gcc-arm-none-eabi-7-2018-q2-update.Ricardo Wurmus
* gnu/packages/embedded.scm (gcc-arm-none-eabi-7-2018-q2-update): New variable. * gnu/packages/patches/gcc-7-cross-environment-variables.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-12-23gnu: Add emacs-next.Amin Bandali
Add `emacs-next' for building latest Emacs from git. * gnu/packages/emacs.scm (emacs-next): New variable. (emacs): make the autoload deletion snippet not fail when eshell/esh-groups.el does not exist. This enables reuse of the entire snippet field of `emacs' for `emacs-next'. * gnu/packages/patches/emacs27-exec-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Add the above patch file to it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-12-23gnu: Add kate.Hartmut Goebel
* gnu/packages/kde-utils.scm: New file. * gnu/local.mk (MODULES): Add it.
2019-12-23gnu: Add grantleetheme.Hartmut Goebel
* gnu/packages/kde.scm (grantleetheme): New variable. * gnu/packages/patches/grantlee-merge-theme-dirs.patch: New file. * gnu:lokal.mk (DATA): Add it.
2019-12-19gnu: Add java-piccolo2d-core.Ricardo Wurmus
* gnu/packages/java-graphics.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2019-12-19Update email for Brett Gilio.Brett Gilio
* .mailmap: Add name and email for Brett Gilio. * gnu/local.mk, gnu/packages/admin.scm, gnu/packages/audio.scm, gnu/packages/bittorrent.scm, gnu/packages/build-tools.scm, gnu/packages/cran.scm, gnu/packages/emacs-xyz.scm, gnu/packages/messaging.scm, gnu/packages/python-xyz.scm, gnu/packages/sml.scm, gnu/packages/terminals.scm, gnu/packages/wm.scm: Update email for Brett Gilio.
2019-12-19gnu: mumble: Update to 1.3.0.Ivan Vilata-i-Balaguer
* gnu/packages/telephony.scm (mumble): Update to 1.3.0. [source]: Remove patch. Update snippet. [build-system]: Switch to qt-build-system. [arguments]: Update custom 'configure phase. Add custom phase to disable murmur ice. [inputs]: Remove protobuf-3.5, libx11, qt-4, alsa-lib. Add protobuf, mesa, qtbase, qtsvg. [native-inputs]: Add python, qttools. [license]: Update license info. * gnu/packages/patches/mumble-1.2.19-abs.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-12-18gnu: linux-libre: Update to 5.4.5.Mark H Weaver
* gnu/packages/aux-files/linux-libre/5.3-arm-veyron.conf, gnu/packages/aux-files/linux-libre/5.3-arm.conf, gnu/packages/aux-files/linux-libre/5.3-arm64.conf, gnu/packages/aux-files/linux-libre/5.3-i686.conf, gnu/packages/aux-files/linux-libre/5.3-x86_64.conf: Delete files. * gnu/packages/aux-files/linux-libre/5.4-arm-veyron.conf, gnu/packages/aux-files/linux-libre/5.4-arm.conf, gnu/packages/aux-files/linux-libre/5.4-arm64.conf, gnu/packages/aux-files/linux-libre/5.4-i686.conf, gnu/packages/aux-files/linux-libre/5.4-x86_64.conf: New files. * Makefile.am (AUX_FILES): Update accordingly. * gnu/packages/patches/linux-libre-active-entropy.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/linux.scm (deblob-scripts-5.3, linux-libre-5.3-version) (linux-libre-5.3-pristine-source, linux-libre-5.3-source) (linux-libre-headers-5.3, linux-libre-5.3): Remove variables. (deblob-scripts-5.4, linux-libre-5.4-version) (linux-libre-5.4-pristine-source, linux-libre-5.4-source) (linux-libre-headers-5.4, linux-libre-5.4): New variables. (linux-libre-version, linux-libre-pristine-source) (linux-libre-source, linux-libre): Point to linux-libre-5.4*.
2019-12-18Merge branch 'master' into stagingMarius Bakke
2019-12-13gnu: hdf5@1.10: Update to 1.10.5.Ludovic Courtès
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5. Remove "hdf5-mpi-deprecations.patch". * gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-13Merge branch 'master' into stagingBrett Gilio
2019-12-12gnu: libnftnl: Update to 1.1.5.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (libnftnl): Update to 1.1.5. [source]: Add patch. * gnu/packages/patches/libnftnl-dont-check-NFTNL_FLOWTABLE_SIZE.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-12-11gnu: pcre2: Update to 10.34.Marius Bakke
* gnu/packages/patches/pcre2-fix-jit_match-crash.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/pcre.scm (pcre2): Update to 10.34. [source](patches): Remove.
2019-12-11gnu: nss: Remove replacement package.Marius Bakke
The merge preceding this commit ignored the 'replacement' added to nss in commit 04b33ce205f38813b4dbd04b6ad3c7aa0be0b6f6, because the security fix is already present in NSS 3.48. This commit removes the remaining bits. * gnu/packages/patches/nss-CVE-2019-11745.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/nss.scm (nss/fixed): Remove variable.
2019-12-11Merge branch 'master' into stagingMarius Bakke
2019-12-11gnu: nss: Fix CVE-2019-11745 via graft.Mark H Weaver
* gnu/packages/patches/nss-CVE-2019-11745.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/nss.scm (nss/fixed): New variable. (nss)[replacement]: Add field.
2019-12-11gnu: orc: Update to 0.4.31.Marius Bakke
* gnu/packages/patches/orc-typedef-enum.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/gstreamer.scm (orc): Update to 0.4.31. [source](patches): Remove.
2019-12-11gnu: mesa: Update to 19.2.7.Marius Bakke
* gnu/packages/patches/mesa-timespec-test-32bit.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/gl.scm (mesa): Update to 19.2.7. [source](patches): Remove obsolete.
2019-12-09gnu: guile: Add 2.2.6-1 with a finalization crash bug-fix.Ludovic Courtès
* gnu/packages/patches/guile-finalization-crash.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/guile.scm (guile-2.2/bug-fix): New variable.
2019-12-09gnu: websocketpp: Add patch for Boost >= 1.70.Guillaume Le Vaillant
* gnu/packages/patches/websocket-fix-for-boost-1.70.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/web.scm (websocketpp): Use it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-12-08gnu: stumpwm: Remove obsolete patch.Evan Straw
* gnu/local.mk (stumpwm-fix-broken-read-one-line.patch): Remove obsolete. Co-authored-by: Brett Gilio <brettg@posteo.net> Signed-off-by: Brett Gilio <brettg@posteo.net>
2019-12-09gnu: ruby-safe-yaml: Update to 1.0.5.Björn Höfling
* gnu/packages/ruby.scm(ruby-save-yaml): Update to 1.0.5. * gnu/packages/patches/ruby-safe-yaml-add-require-time.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-08gnu: glusterfs: Update to 7.0Andrew Miloradovsky
* gnu/packages/file-systems.scm (glusterfs): Update to 7.0. [source]: Update URL. [arguments]: Add "PYTHON=" and"--enable-cmocka" configure flags. Remove 'replace-config.sub and 'fix-lex phases. Add 'autogen. [native-inputs]: Add libtirpc, rpcsvc-proto, autoconf, automake, and libtool. [inputs]: Add fuse, libaio, and rdma-core. Remove lvm2 and sqlite. * gnu/packages/patches/glusterfs-use-PATH-instead-of-hardcodes.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-12-07gnu: python-pyatspi: Update to 2.32.1.Kei Kebreau
* gnu/packages/gnome.scm (python-pyatspi): Update to 2.32.1. [source]: Remove patch. * gnu/packages/patches/python-pyatspi-python-37.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-07gnu: totem: Update to 3.32.1.Kei Kebreau
* gnu/packages/gnome.scm (totem): Update to 3.32.1. [source]: Remove patches. [arguments]: Add 'pre-check' phase. Remove #:parallel-build?. [native-inputs]: Add python-pylint and xorg-server-for-tests. [inputs]: Replace python2-pygobject with python-pygobject. * gnu/packages/patches/totem-meson-easy-codec.patch, gnu/packages/patches/totem-meson-compat.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2019-12-07gnu: gnome-control-center: Update to 3.32.2.Kei Kebreau
* gnu/packages/gnome.scm (gnome-control-center): Update to 3.32.2. [source]: Remove patch. [arguments]: Adjust 'patch-paths' phase accordingly. [native-inputs]: Add hicolor-icon-theme, python-dbusmock and xorg-server-for-tests. [inputs]: Add gnome-session and gsound. * gnu/packages/patches/gnome-control-center-udisks.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove patch.
2019-12-07gnu: mes: Add patch to remove store name from binary.Jan Nieuwenhuizen
* gnu/packages/patches/mes-remove-store-name.patch: New file, from upstream. * gnu/packages/mes.scm (mes): Use it. Add `www.' to homepage. * gnu/local.mk (dist_patch_DATA): Add it.
2019-12-06gnu: Add ncompress.Jan Nieuwenhuizen
* gnu/packages/compression.scm (ncompress): New variable. * gnu/packages/patches/compress-fix-softlinks.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-12-05gnu: Really move lisp libraries to lisp-xyz, uglify-js to javascript and ↵Pierre Neidhardt
stumpwm to wm. * gnu/local.mk: Include lisp-xyz.scm. * gnu/packages/lisp-xyz.scm: New file. * gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to javascript.scm and stumpwm to wm.scm. * gnu/packages/javascript.scm: Add uglify-js. * gnu/packages/wm.scm: Add stumpwm. * gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm. * gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm. * gnu/packages/web.scm: Find uglify-js in javascript.scm. * gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm. * guix/build-system/minify.scm (default-uglify-js): Find uglify-js in javascript module instead of lisp.
2019-12-05Revert "gnu: Properly move lisp libraries to lisp-xyz, uglify-js to ↵Tobias Geerinckx-Rice
javascript and stumpwm to wm." This reverts commit ac1ee30f4f7f9d0ae2a655676b0e8b9eb90a35dd, which still breaks ‘guix pull’.
2019-12-05gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascript and ↵Pierre Neidhardt
stumpwm to wm. * gnu/local.mk: Include lisp-xyz.scm. * gnu/packages/lisp-xyz.scm: New file. * gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to javascript.scm and stumpwm to wm.scm. * gnu/packages/javascript.scm: Add uglify-js. * gnu/packages/wm.scm: Add stumpwm. * gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm. * gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm. * gnu/packages/web.scm: Find uglify-js in javascript.scm. * gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm. * guix/build-system/minify.scm (default-uglify-js): Find uglify-js in javascript module instead of lisp.
2019-12-04gnu: libjpeg-turbo: Fix CVE-2019-13960 and CVE-2019-2201.Marius Bakke
* gnu/packages/patches/libjpeg-turbo-CVE-2019-2201.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/image.scm (libjpeg-turbo/fixed): New variable. (libjpeg-turbo)[replacement]: New field.
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