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2021-12-20gnu: opencv: Update to 4.5.4.Ricardo Wurmus
* gnu/packages/patches/opencv-fix-build-of-grfmt_jpeg2000.cpp.patch: Delete file. * gnu/packages/patches/opencv-rgbd-aarch64-test-fix.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove patches. * gnu/packages/image-processing.scm (opencv): Update to 4.5.4. [source]: Remove patch; keep bundled quirc. [arguments]: Build without ade; update build phase 'disable-broken-tests; remove build phase 'add-ilmbase-include-path. [native-inputs]: Update source hashes for opencv-contrib and opencv-extra. [inputs]: Use new style; add imath and openblas; replace openexr-2 with openexr. [description]: Reformat first paragraph.
2021-12-19gnu: xdg-desktop-portal-wlr: Add binary dependencies.Josselin Poiret
* gnu/packages/patches/xdg-desktop-portal-wlr-harcoded-length.patch: Add it. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/freedesktop.scm (xdg-desktop-portal-wlr): Add dependencies on bash-minimal, grim and slurp, and hardcode the paths in source. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-19gnu: bear: Update to 3.0.17.Tobias Geerinckx-Rice
* gnu/packages/build-tools.scm (bear): Update to 3.0.17. [source]: Remove patch, and… [arguments]: …replace it with a new 'disable-TEST_BEFORE_INSTALL phase. Don't explicitly return #t from other phases. * gnu/packages/patches/bear-disable-preinstall-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-12-18gnu: sssd: Fix build with glibc-2.33Remco van 't Veer
* gnu/packages/patches/sssd-collision-with-external-nss-symbol.patch: Commit from sssd repo * gnu/packages/sssd.scm: Add patch Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-18gnu: Add Dyninst.Olivier Dion
* gnu/packages/instrumentation.scm: New file * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-18gnu: trytond: Ensure all modules are found.Hartmut Goebel
If the python package matching trytond is not installed alongside to trytond, PYTHONPATH is not set (or pointing to a wrong version) and trytond (and the trytond tools) would not find the trytond modules. This change introduces a new native-search-path GUIX_TRYTOND_MODULES_PATH. Trytond gets patched to honor this environment variable. Thanks to Maxim Cournoyer, whose code for guix-pythonpath-search-path was the template for guix-trytonpath-search-path. * gnu/packages/patches/trytond-add-guix_trytond_path.patch: New file. * gnu/local.mk: (dist_patch_DATA): Add it. * gnu/packages/tryton.scm (trytond): Use it. [native-search-paths]: New element. (guix-trytonpath-search-path): New function.
2021-12-18gnu: trytond: Fix import of trytond modules.Hartmut Goebel
For adding modules, trytond uses entry-points, anyhow relying on the modules being named "trytond.modules.xxx" and being placed in the same filesystem path as "trytond.modules". The package "trytond.modules" is not a namespace module, anyhow trytond modules must be sub-modules of "trytond.modules". This works well if all packages are installed into the same filesystem path "…/trytond/modules": The Python importer will find all sub_modules at this place. Anyhow, in Guix, modules don't share the same filesystem path and the Python importer will not find them. Solution is to add all trytond module's locations to "trytond.modules._path__". This will make "trytond.module" behave much like a namespace module and the importer pick up the module. * gnu/packages/patches/trytond-add-egg-modules-to-path.patch: New file. * gnu/packages/tryton.scm (trytond): Use it. * gnu/local.mk (dist_patch_DATA): Add it
2021-12-18gnu: build: Register missing patches.Josselin Poiret via Guix-patches via
* gnu/local.mk (dist_patch_DATA): Add gcc-cross-gxx-include-dir.patch, gcc-10-cross-environment-variables.patch, gnome-session-support-elogind.patch, icedtea-7-hotspot-aarch64-use-c++98.patch, libvirt-create-machine-cgroup.patch, openjdk-14-builtins.patch, python-babel-fix-parse-future-test.patch, rust-wl-clipboard-rs-newer-wl.patch, streamlink-update-test.patch. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-12-17gnu: grfcodec: Fix build with GCC 10.Marius Bakke
* gnu/packages/patches/grfcodec-gcc-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/game-development.scm (grfcodec)[source](patches): New field. [arguments]: Remove trailing #t.
2021-12-16gnu: xf86-video-qxl: Fix build.Maxim Cournoyer
* gnu/packages/patches/xf86-video-qxl-fix-build.patch: Add patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/xorg.scm (xf86-video-qxl): Apply it.
2021-12-17gnu: telepathy-glib: Update to 0.24.2.Liliana Marie Prikler
* gnu/packages/glib.scm (telepathy-glib): Update to 0.24.2. [source]: Drop upstreamed patches. * gnu/packages/patches/telepathy-glib-channel-memory-leak.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-12-17gnu: Remove unreferenced nss/fixed.Tobias Geerinckx-Rice
* gnu/packages/nss.scm (nss/fixed): Remove variable. * gnu/packages/patches/nss-CVE-2021-43527.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-12-16gnu: python-magic: Work around crash on .crx files.Marius Bakke
* gnu/packages/patches/python-magic-python-bytecode.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python-xyz.scm (python-magic)[source](patches): Add it. [inputs]: Add FILE-NEXT. [arguments]: While at it, remove input labels. * gnu/packages/diffoscope.scm (diffoscope)[native-inputs]: Add FILE-NEXT.
2021-12-16gnu: ungoogled-chromium: Unexpire accelerated video decoding.Marius Bakke
* gnu/packages/patches/ungoogled-chromium-accelerated-video-decode.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/chromium.scm (%guix-patches): Add it.
2021-12-16gnu: ungoogled-chromium: Enable RUNPATH validation.Marius Bakke
* gnu/packages/patches/ungoogled-chromium-RUNPATH.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/chromium.scm (%guix-patches): Add it. (ungoogled-chromium)[arguments]: Remove #:validate-runpath?.
2021-12-16gnu: php: Properly fix openssl_x509_checkpurpose_basic.phpt.Tobias Geerinckx-Rice
* gnu/packages/php.scm (php)[source]: Add patch. * gnu/packages/patches/php-openssl_x509_checkpurpose_basic.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Thanks to Diego Nicola Barbato <dnbarbato@posteo.de>
2021-12-16gnu: Add js-mathjax-3.Lars-Dominik Braun
* gnu/packages/javascript.scm (js-mathjax-3): New variable. * gnu/packages/patches/mathjax-disable-webpack.patch, gnu/packages/patches/mathjax-no-a11y.patch: New patches. * gnu/local.mk (dist_patch_DATA): Register them.
2021-12-15gnu: spice-vdagent: Fix build with glib >= 2.68.Tobias Geerinckx-Rice
* gnu/packages/spice.scm (spice-vdagent)[source]: Add patch. * gnu/packages/patches/spice-vdagent-glib-2.68.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2021-12-14gnu: i7z: Fix building with GCC >= 10.Tobias Geerinckx-Rice
* gnu/packages/hardware.scm (i7z)[source]: Add patch. * gnu/packages/patches/i7z-gcc-10.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2021-12-13gnu: python-versioneer: Add support for Guix build directories.Marius Bakke
* gnu/packages/patches/python-versioneer-guix-support.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python-xyz.scm (python-versioneer)[source](patches): New field.
2021-12-13Merge branch 'master' into core-updates-frozenLudovic Courtès
2021-12-12gnu: python-pyflakes@2.2: Adjust tests for Python 3.9.Ludovic Courtès
* gnu/packages/patches/python-pyflakes-test-location.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python-xyz.scm (python-pyflakes-2.2): Use it.
2021-12-12gnu: sbcl-aserve: Add HTML5 elements to htmlgen.Foo Chuan Wei
* gnu/patches/sbcl-aserve-add-HTML-5-elements.patch: New file. * gnu/patches/sbcl-aserve-fix-rfe12668.patch: New file. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/lisp-xyz.scm (sbcl-aserve)[source]: Use them. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-12-11gnu: i3status-rust: Add missing inputs.Petr Hodina
* gnu/packages/rust-apps (i3status-rust)[inputs]: Add alsa-utils, bash-minmal, coreutils, ibus, iproute, kdeconnect, lm-sensors, setxkbmap, speedtest-cli, xdg-utils, xrandr. [arguments]: Add phase to wrap-program bin/i3status-rs. * gnu/local.mk: Add patch (change not applied in 575fcd3045ff1649e5319b6701ff9e28e97793e0) Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10Merge remote-tracking branch 'signed/master' into core-updatesMathieu Othacehe
2021-12-10gnu: sendgmail: Don't limit domain name of sender.Philip McGrath
There are three open pull requests adding this functionality: - https://github.com/google/gmail-oauth2-tools/pull/17 (October 2019) - https://github.com/google/gmail-oauth2-tools/pull/26 (May 2020) - https://github.com/google/gmail-oauth2-tools/pull/37 (May 2021) (The patch here is identical to #26, so I just closed this one.) Meanwhile, the most recent commit to the upstream repository was in May 2019: that was the commit that first added `sendgmail`. This commit adjusts Guix's `sendgmail`, following Postel's advice, to make the command "liberal in its receiving behavior" (RFC 760): it always accepts email addresses with any domain name, as in #26, and it accepts (and ignores) the `-gsuite` flag used in #17. * gnu/packages/patches/sendgmail-remove-domain-restriction.patch: New file. This is the patch from #26. * gnu/packages/patches/sendgmail-accept-ignored-gsuite-flag.patch: New file, based on #17. * gnu/local.mk (dist_patch_DATA): Add the new patches. * gnu/packages/mail.scm (sendgmail)[source]: Apply the new patches. Increment the "revision" argument to `git-version` from 0 to 1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-10gnu: cdrkit-libre: Fix cross-compiling.Efraim Flashner
* gnu/packages/cdrom.scm (cdrkit-libre)[source]: Add patch. * gnu/packages/patches/cdrkit-libre-cross-compile.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2021-12-09gnu: metabat: Update to 2.15.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (metabat): Update to 2.15. [source]: Remove patch. [build-system]: Use cmake-build-system. [arguments]: Adjust to new build system. * gnu/packages/patches/metabat-fix-compilation.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-12-09gnu: bind: Update to 9.16.23 [fixes CVE-2021-25218, CVE-2021-25219].Tobias Geerinckx-Rice
* gnu/packages/dns.scm (isc-bind): Update to 9.16.23. [source]: Add patch. * gnu/packages/patches/bind-re-add-attr-constructor-priority.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2021-12-08gnu: geeqie: Fix X11 error at startup.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/52089>. Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>. Patch provided by John Kehayias <john.kehayias@protonmail.com>. * gnu/packages/patches/geeqie-clutter.patch: New file. * gnu/packages/image-viewers.scm (geeqie)[sources]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2021-12-07gnu: icecat: Update to 91.4.0-guix0-preview1 [security fixes].Mark H Weaver
Includes fixes for CVE-2021-43536, CVE-2021-43537, CVE-2021-43538, CVE-2021-43539, CVE-2021-43541, CVE-2021-43542, CVE-2021-43543, CVE-2021-43545, CVE-2021-43546, and MOZ-2021-0009. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Remove icecat-CVE-2021-43527.patch, which is now included in upstream icecat. Update the gnuzilla commit, base version, and hashes. * gnu/packages/patches/icecat-CVE-2021-43527.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-12-06gnu: helm: Fix build with GCC 9 and later.Pierre Langlois
* gnu/packages/music.scm (helm)[origin]: Add patch. * gnu/packages/patches/helm-fix-gcc-9-build.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2021-12-06gnu: go-github-com-golang-snappy: Adjust test-suite on 32-bit systems.Efraim Flashner
* gnu/packages/syncthing.scm (go-github-com-golang-snappy)[source]: Add patch to skip a test on 32-bit systems. * gnu/packages/patches/go-github-com-golang-snappy-32bit-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2021-12-05Merge remote-tracking branch 'origin/master' into core-updates-frozenRicardo Wurmus
2021-12-04gnu: libunwind-julia: Fix build on i686-linux.zimoun
* gnu/packages/julia.scm (libunwind)[origin]<patches>: Add patch. * gnu/packages/patches/libunwind-julia-fix-GCC10-fno-common.patch: New file. * gnu/local/mk (dist_patch_DATA): Register it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-03gnu: icecat: Remove vestigial icecat-78-makeicecat.patch.Mark H Weaver
This is a followup to commit a63231003e7bbeafb0110b077788e47e78685f20. * gnu/packages/patches/icecat-78-makeicecat.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-12-03gnu: icecat: Fix CVE-2021-43527.Mark H Weaver
* gnu/packages/patches/icecat-CVE-2021-43527.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnuzilla.scm (icecat-source): Apply it.
2021-12-03gnu: nss: Fix CVE-2021-43527 via graft.Mark H Weaver
* gnu/packages/patches/nss-CVE-2021-43527.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/nss.scm (nss/fixed): New variable (nss)[replacement]: New field.
2021-12-01gnu: scalapack: Update to 2.1.0.Ludovic Courtès
* gnu/packages/maths.scm (scalapack): Update to 2.1.0. [source]: Remove "scalapack-blacs-mpi-deprecations.patch" and add "scalapack-gcc-10-compilation.patch". [arguments]: Add 'skip-faulty-test' phase. * gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch: Remove. * gnu/packages/patches/scalapack-gcc-10-compilation.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-12-01gnu: Update Trezor support.Attila Lendvai
* gnu/packages/patches/python-trezor-agent-fix-argv0.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Apply previous removal. * gnu/packages/finance.scm (python-trezor-agent): Update to 0.14.4. [source]: Remove now useless patch. (python-mnemonic): Update to 0.20. (python-trezor): Update to 0.12.4 (trezor-agent): Update to 0.11.0-1. [source]: Add file-name field. [arguments]: Remove trailing #T in phases. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-01gnu: Add dynaconf.Giacomo Leidi
* gnu/packages/python-xyz.scm (dynaconf): New variable. * gnu/packages/patches/dynaconf-Unvendor-dependencies.patch: New file. * local.mk (dist_patch_DATA): Register it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-01gnu: Remove duplicated patch.Mathieu Othacehe
* gnu/local.mk (dist_patch_DATA): Remove duplicated line.
2021-11-30gnu: freecad: Fix build.Mathieu Othacehe
* gnu/packages/patches/freecad-boost-serialization.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/engineering.scm (freecad) [source]: Use it. [arguments]{#:configure-flags}: Turn it into a GEXP and adapt it.
2021-11-30gnu: freecad: Switch to vtk-9.Mathieu Othacehe
Switch to vtk-9 with the relevant patch to be able to get rid of vtk-8. * gnu/packages/patches/freecad-vtk9.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/engineering.scm (freecad)[source]: Use it.
2021-11-30gnu: coq: Update to 8.14.0.Julien Lepiller
* gnu/packages/coq.scm (coq): Update to 8.14.0. (coq-bignums): Update to 8.14.0. (coq-equations): Update to 1.3. * gnu/packages/patches/coq-fix-envvars.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2021-11-29gnu: agg: Fix build.Mathieu Othacehe
* gnu/packages/patches/agg-2.5-gcc8.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/graphics.scm (agg)[source]: Use it.
2021-11-28gnu: python-trezor-agent: Fix key generation with trezor-gpg initAttila Lendvai
* gnu/packages/finance.scm (trezor-agent): Add comment on why the undoing of the wrapping is done, and also delete the irrelevant sideffect of the now undone wrapping. (python-trezor-agent): Add a patch that changes the python code to handle the argv[0] changed by the wrapping. * gnu/packages/patches/trezor-agent-fix-argv0.patch: New file. * gnu/local.mk (dist_patch_DATA): Reference patch. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-11-27gnu: u-boot: Fix rk3399 boot from emmc.Pierre Langlois
* gnu/packages/bootloaders.scm (%u-boot-rk3399-enable-emmc-phy-patch): New variable. (u-boot)[origin]: Register it. * gnu/packages/patches/u-boot-rk3399-enable-emmc-phy.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2021-11-27gnu: gnome-boxes: Add Guix logo support.Mathieu Othacehe
* gnu/packages/patches/gnome-boxes-add-guix-logo.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (gnome-boxes): Use it.
2021-11-26gnu: tor: Address glibc 2.33 compatibility issue on i686.Ludovic Courtès
* gnu/packages/patches/tor-sandbox-i686.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/tor.scm (tor): Use it.
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