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2022-06-01gnu: Remove unreferenced patch.Efraim Flashner
This is a follow-up to a08c21f206d34a42d311e46b495b422188be70eb. * gnu/packages/patches/libmicrohttpd-0.9.73-test-ssl3.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2022-06-01gnu: pigx-bsseq: Update to 0.1.7.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.1.7. [source]: Remove patch. [arguments]: Remove 'autoreconf phase. [native-inputs]: Remove automake and autoconf. * gnu/packages/patches/pigx-bsseq-no-citeproc.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove patch.
2022-06-01gnu: pigx-chipseq: Update to 0.1.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.1.0. [source]: Remove patch. [arguments]: Remove 'autoreconf phase. [native-inputs]: Remove autoconf and automake. * gnu/packages/patches/pigx-chipseq-no-citeproc.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove patch.
2022-05-31gnu: openbox: Patch for Python 3.Maxim Cournoyer
* gnu/packages/patches/openbox-python3.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/openbox.scm (openbox)[source]: Apply it. [arguments]: New field. [propagated-inputs]: Replace python2-pyxdg with python-pyxdg. [native-inputs]: Replace python-2 with python-wrapper. Add autoconf, automake, gettext-minimal and libtool.
2022-05-31gnu: Remove 4store.Maxim Cournoyer
* gnu/packages/databases.scm (4store): Delete variable. * gnu/packages/patches/4store-fix-buildsystem.patch: Delete file. * gnu/packages/patches/4store-unset-preprocessor-directive.patch: Likewise. * gnu/local.mk (dist_patch_DATA): De-register them.
2022-05-31gnu: mozjs: Cleanup to only keep the last version.Maxim Cournoyer
* gnu/packages/gnuzilla.scm (mozjs): Preserve only the metadata and otherwise update fields to use those of mozjs-78. [arguments]: Use gexps. [phases]: Delete trailing #t. [native-inputs]: Use new style. (mozjs-38, mozjs-52, mozjs-60, mozjs-78): Delete variables. * gnu/packages/patches/mozjs17-aarch64-support.patch * gnu/packages/patches/mozjs24-aarch64-support.patch * gnu/packages/patches/mozjs38-pkg-config-version.patch * gnu/packages/patches/mozjs38-shell-version.patch * gnu/packages/patches/mozjs38-tracelogger.patch * gnu/packages/patches/mozjs38-version-detection.patch * gnu/packages/patches/mozjs60-riscv64-support.patch: Delete patches. * gnu/local.mk (dist_patch_DATA): De-register them. * gnu/packages/games.scm (0ad): Adjust accordingly. * gnu/packages/gnome.scm (gjs): Likewise. * gnu/packages/polkit.scm (polkit-mozjs): Likewise.
2022-05-31gnu: mia: Update to 2.4.7.Maxim Cournoyer
* gnu/packages/patches/mia-fix-boost-headers.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/image-processing.scm (mia): Update to 2.4.7. [source]: Apply patch. [configure-flags]: Use the more conventional OFF option value (instead of 0). [inputs]: Use new style. Replace python2-lxml by python-lxml. Replace vtk by vtk-7. [native-inputs]: Use new style. Replace python-2 with python-wrapper.
2022-05-31gnu: itk-snap: Fix build.Maxim Cournoyer
* gnu/packages/patches/itk-snap-alt-glibc-compat.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/image-processing.scm (itk-snap): Apply it. [phases]: Delete trailing #t. [inputs]: Use new style. Replace vtk-6 with vtk-7.
2022-05-31gnu: Add vtk-7.Maxim Cournoyer
* gnu/packages/image-processing.scm: (vtk-7): New variable. * gnu/packages/patches/vtk-7-gcc-10-compat.patch: New patch. * gnu/packages/patches/vtk-7-hdf5-compat.patch: Likewise. * gnu/packages/patches/vtk-7-python-compat.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Register them.
2022-05-31gnu: Remove rapicorn.Maxim Cournoyer
* gnu/packages/graphics.scm (rapicorn): Delete variable. * gnu/packages/patches/rapicorn-isnan.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): De-register it.
2022-05-31gnu: breezy: Update to 3.2.2.Maxim Cournoyer
* gnu/packages/patches/breezy-fix-gio.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/version-control.scm (breezy): Update to 3.2.2. [source]{snippet}: Delete pre-generated cythonized C files. {patches}: Apply patch. [tests?]: Disable tests. [phases]{patch-test-shebangs, check}: New phase and override. [native-inputs]: Add nano, python-cython, python-docutils, and python-testrepository. [inputs]: Use new style. Add python-launchpadlib and python-pygobject. [description]: Adjust Bazaar URL.
2022-05-31gnu: Remove python2-pygobject.Maxim Cournoyer
* gnu/packages/glib.scm (python2-pygobject, python2-pygobject-2): Delete variables. (python-pygobject)[properties]: Delete field. * gnu/packages/patches/python2-pygobject-2-deprecation.patch: Delete file. * gnu/local.mk (dist_patch_DATA): De-register it. * gnu/packages/gnome.scm (libsecret): Remove commented Python 2 inputs.
2022-05-31gnu: Remove wicd.Maxim Cournoyer
The last release is from 2017, stuck on Python 2. * gnu/packages/wicd.scm: Delete file. * gnu/packages/patches/wicd-bitrate-none-fix.patch: Delete file. * gnu/packages/patches/wicd-get-selected-profile-fix.patch: Likewise. * gnu/packages/patches/wicd-urwid-1.3.patch: Likewise. * gnu/packages/patches/wicd-wpa2-ttls.patch: Likewise. * gnu/local.mk: De-register them. * gnu/services/networking.scm: Remove wicd service... * doc/guix.texi: ... and its documentation. * gnu/system/linux-container.scm (containerized-operating-system) <services-to-drop>: Remove wicd-service-type.
2022-05-31gnu: Remove python2-subprocess32.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python2-subprocess32): Delete variable. * gnu/packages/patches/python2-subprocess32-disable-input-test.patch: Delete file. * gnu/local.mk (dist_patch_DATA): De-register it.
2022-05-31gnu: gourmet: Update to 0.17.4-0-8af29c8 and enable tests.Maxim Cournoyer
* gnu/packages/patches/gourmet-sqlalchemy-compat.patch: Add file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/nutrition.scm (gourmet): Update to 0.17.4-0-8af29c8. [source]: Apply patch. [python]: Delete argument. [tests?]: Likewise. [phases]{prepare-x}: New phase. {check}: New phase override. {install-dekstop-file-and-icons}: New phase. [native-inputs]: Delete python2-distutils-extra, intltool and python2-pygtk. Add python-dogtail, python-pytest, python-selenium and xorg-server-for-tests. [inputs]: Delete python2-pygtk, python2-sqlalchemy, python2-lxml, python2-pillow and python2-elib.intl. Add gtk+, python-argcomplete, python-beautifulsoup4, python-gst, python-keyring, python-lxml, python-pillow, python-pycairo, python-pyenchant, python-pygobject, python-requests, python-scrape-schema-recipe, python-sqlalchemy.
2022-05-31gnu: Remove python2-parameterized.Maxim Cournoyer
* gnu/packages/check.scm (python2-parameterized): Delete variable. * gnu/packages/patches/python2-parameterized-docstring-test.patch: Delete file. * gnu/local.mk (dist_patch_DATA): De-register it.
2022-05-31gnu: guile-ac-d-bus: Run test suite.Maxim Cournoyer
* gnu/packages/patches/guile-ac-d-bus-fix-tests.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/guile-xyz.scm (guile-ac-d-bus) [source]: Apply patch. [phases]{check}: New phase. [native-inputs]: Add bash-minimal.
2022-05-31gnu: emacs-helpful: Update to 0.19yarl baudig
* gnu/packages/patches/emacs-helpful-docstring-test.patch: New file. * gnu/packages/emacs-xyz.scm (emacs-helpful): Update to 0.19. [source]: Use the patch. * gnu/local.mk (dist_patch_DATA): Register the patch. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-05-30gnu: casync: Update to 99559cd1.Greg Hogan
* gnu/packages/sync.scm (casync): Update to 99559cd1. [source]: Remove patch. [arguments]: Fix installation. [native-inputs]: Add python. [inputs]: Add eudev. * gnu/packages/patches/casync-renameat2-declaration.patch: Delete file. * gnu/local.mk: Remove it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-30gnu: GCC: Add cross environment variables patch to GCC 12.Morgan Smith
* gnu/packages/patches/gcc-12-cross-environment-variables.patch : New file. * gnu/local.mk (dist_patch_DATA): Add gcc-12-cross-environment-variables.patch. * gnu/packages/cross-base.scm (cross-gcc)[source](patches): Apply the patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-30gnu: virtuoso-ose: Register patch.Efraim Flashner
This is a follow-up to 48efbde7a944acfe4fc944bf27bfa9ff82592024. * gnu/local.mk (dist_patch_DATA): Register patch.
2022-05-27gnu: emacs-deferred: Fix wrong number of arguments.Liliana Marie Prikler
* gnu/packages/patches/emacs-deferred-fix-number-of-arguments.patch: New file. * gnu/packages/emacs-xyz.scm (emacs-deferred)[patches]: Use it here. * gnu/local.mk (dist_patch_DATA): Add it here.
2022-05-25Move (gnu platform) and (gnu platforms ...) to guix/.Josselin Poiret
* gnu/platform.scm: * gnu/platforms/arm.scm: * gnu/platforms/hurd.scm: * gnu/platforms/mips.scm: * gnu/platforms/powerpc.scm: * gnu/platforms/riscv.scm: * gnu/platforms/s390.scm: * gnu/platforms/x86.scm: Move to guix/. * Makefile.am: * doc/guix.texi (Porting to a New Platform): * etc/release-manifest.scm: * gnu/ci.scm: * gnu/image.scm: * gnu/local.mk: * gnu/packages/bioinformatics.scm: * gnu/packages/bootstrap.scm: * gnu/packages/cross-base.scm: * gnu/packages/instrumentation.scm: * gnu/packages/linux.scm: * gnu/system/image.scm: * gnu/system/images/hurd.scm: * gnu/system/images/novena.scm: * gnu/system/images/pine64.scm: * gnu/system/images/pinebook-pro.scm: * gnu/system/images/rock64.scm: * guix/scripts/build.scm: * guix/scripts/system.scm: * guix/self.scm: Update (gnu platform...) to (guix platform...). Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-05-22gnu: ytnef: Update to 2.0.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (ytnef): Update to 2.0. [source]: Remove patches. * gnu/packages/patches/ytnef-CVE-2021-3403.patch, gnu/packages/patches/ytnef-CVE-2021-3404.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
2022-05-24gnu: gcc@12: Add missing file.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/55616>. Reported by Tim Rakowski <tim.rakowski@gmail.com>. This is a followup to 37e29ccd332f371aacedc71388e805fbc9e947fa. * gnu/packages/patches/gcc-12-strmov-store-file-names.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2022-05-24gnu: sssd: Update to 2.7.0.Timotej Lazar
Add support for renewing AD membership with adcli. Wrap binaries with LDB_MODULES_PATH. Fix the sss_analyze utility to run without systemd libraries. Add native inputs to generate man pages and run additional tests during build. * gnu/packages/sssd.scm (sssd): Update to 2.7.0. [patches]: Drop patches applied upstream. Add a patch for sss_analyze. [inputs]: Add adcli, bash-minimal, jose, keyutils, libnl, pcre2, python. Drop augeas, pcre. [native-inputs]: Add cmocka, doxygen, gettext-minimal, libfaketime, libtool, openssh, po4a, softhsm. [arguments]: Rewrite in gexp style. Fix configure checks. Remove static library from install. Wrap binaries to set correct paths. * gnu/packages/patches/sssd-collision-with-external-nss-symbol.patch, gnu/packages/patches/sssd-fix-samba-4.15.3.patch, gnu/packages/patches/sssd-fix-samba.patch: Delete files. * gnu/packages/patches/sssd-optional-systemd.patch: New file. * gnu/local.mk (dist_patch_DATA): Update accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-22platform: Introduce new platforms.Mathieu Othacehe
* gnu/platforms/intel.scm: New file. * gnu/platforms/mips.scm: Ditto. * gnu/platforms/powerpc.scm: Ditto. * gnu/platforms/riscv.scm: Ditto. * gnu/platforms/s390.scm: Ditto. * gnu/local.mk (GNU_SYSTEM_MODULES): Add them. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-05-22guix: Add elm-build-system.Philip McGrath
* gnu/packages/patches/elm-offline-package-registry.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/elm.scm (elm): Use it. * guix/build-system/elm.scm, guix/build/elm-build-system.scm, tests/elm.scm: New files. * Makefile.scm (MODULES, SCM_TESTS): Add them. * doc/guix.texi (Build Systems): Document 'elm-build-system'. * doc/contributing.texi (Elm Packages): New section. Document naming conventions and utilities. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-22gnu: elm-compiler: Update to 0.19.1.Philip McGrath
* gnu/packages/patches/elm-compiler-disable-reactor.patch, gnu/packages/patches/elm-compiler-fix-map-key.patch: Delete files. * gnu/packages/patches/elm-reactor-static-files.patch: New file. * gnu/local.mk (dist_patch_DATA): Update accordingly. * gnu/packages/elm.scm (elm-compiler): Update to 0.19.1. [origin]<patches>: Remove stale patches. Add new patch. [arguments]: Use G-expressions. Add #:configure-flags for new patch. [inputs]: Remove ghc-file-embed. Add ghc-filelock. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-20gnu: Add libobjc2.Zhu Zihao
* gnu/packages/patches/libobjc2-unbundle-robin-map.patch: New file. * gnu/local.mk (dist_patch_DATA): Add corresponding file entry. * gnu/packages/gnustep.scm (libobjc2): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-19gnu: emacs-ess: Fix build failure.Liliana Marie Prikler
* gnu/packages/patches/emacs-ess-fix-obsolete-function-alias.patch: New file. * gnu/packages/statistics.scm (emacs-ess)[source]<patches>: Add it here... * gnu/local.mk (dist_patch_DATA): ... and here.
2022-05-18gnu: emacs-lispy: Fix failing test under Emacs 28.Kyle Meyer
* gnu/packages/patches/emacs-lispy-fix-thread-last-test.patch: New file. * gnu/packages/emacs-xyz.scm (emacs-lispy): Use it here. * gnu/local.mk (dist_patch_DATA): Register it here. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-05-16gnu: gcolor3: Fix build with libportal-0.5.Sughosha
* gnu/packages/patches/gcolor3-update-libportal-usage.patch: New file. * gnu/packages/gnome.scm (gcolor3)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-15gnu: emacs-yasnippet: Fix build.Liliana Marie Prikler
* gnu/packages/patches/emacs-yasnippet-fix-tests.patch: New file. * gnu/packages/emacs-xyz.scm (emacs-yasnippet): Use it here. * gnu/local.mk (dist_patch_DATA): Register it here.
2022-05-14gnu: libxmlb: Install xb-tool in bin dir.Vagrant Cascadian
* gnu/packages/patches/libxmlb-install-xb-tool-into-bindir.patch: New file. * gnu/packages/xml.scm (libxmlb)[source]: Add patch. * gnu/local.mk (dist_patch_DATA): Add patch. * gnu/packages/diffoscope.scm (diffoscope)[arguments]: Add 'xb-tool-external-tool phase.
2022-05-14gnu: emacs: Update to 28.1.Liliana Marie Prikler
* gnu/packages/emacs.scm (emacs): Update to 28.1 * gnu/packages/patches/emacs-exec-path.patch: Adjust accordingly. * gnu/packages/patches/emacs-ignore-empty-xim-styles.patch: Delete file. * gnu/local.mk: Remove it here.
2022-05-12gnu: python-ipython-documentation: Also build info and pdf targets.Maxim Cournoyer
* gnu/packages/patches/python-ipython-documentation-chars.patch: New file. * gnu/packages/patches/python-ipython-documentation-repro.patch: Likewise. * gnu/local.mk: Register them. * gnu/packages/python-xyz.scm (python-ipython-documentation) [source]: Apply patches. [arguments]: Use gexps. [phases]{sanitize-sources}: New phase. {configure-sphinx-for-xelatex}: Likewise. {install}: Streamline. Also build and install the PDF and info manual. Enable parallel processing. [inputs]: Delete field. [propagated-inputs]: Remove texlive-updmap.cfg input. Add fontconfig, font-gnu-freefont, graphviz, python-docrepr, texlive-polyglossia, texlive-bin and texlive-xindy.
2022-05-12gnu: Add python-debugpy.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-debugpy): New variable. * gnu/packages/patches/python-debugpy-unbundle-pydevd.patch: New file. * gnu/local.mk: Register it.
2022-05-12gnu: python-mypy: Update to 0.942 and fix search path.Maxim Cournoyer
* gnu/packages/patches/python-mypy-use-sys-path.patch: New patch. * gnu/local.mk: Register it. * gnu/packages/python-check.scm (python-mypy): Update to 0.942. [source]: Apply patch.
2022-05-12gnu: racket: Update to 8.5.Philip McGrath
* gnu/packages/patches/racket-gui-tethered-launcher-backport.patch, gnu/packages/patches/racket-enable-scheme-backport.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/chez.scm (chez-scheme-for-racket): Update to 9.5.7.6. * gnu/packages/racket.scm (%racket-version): Update to 8.5. (%racket-origin)[patches]: Remove obsolete patches. (racket-vm-common-configure-flags): Correct comment. (racket)[inputs]<2d, datalog, deinprogramm, draw, drracket, expeditor, htdp, pict, plot, quickscript, racklog, rackunit, redex, scribble, typed-racket, string-constants, syntax-color, web-server, xrepl>: Update checksums. <gui, srfi>: Likewise, and remove obsolete backports. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-08gnu: isc-dhcp: Update to 4.4.3.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (isc-dhcp): Update to 4.4.3. [source]: Remove upstreamed patch. * gnu/packages/patches/isc-dhcp-gcc-compat.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2022-05-09gnu: valgrind: Allow ld.so symbols to be found.Denis 'GNUtoo' Carikli
Fixes <https://issues.guix.gnu.org/54728>. * gnu/packages/valgrind.scm (valgrind/interactive)[native-inputs]: Add libc:debug [arguments]: Add patch-default-debuginfo-path phase [source]: Add patch. (valgrind-3.18)[source]: Inherit from (package-source valgrind/interactive) and remove 'patches' field. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-05-09gnu: emacs-git-email: Fixes build of package.Niklas Eklund
* gnu/packages/patches/emacs-git-email-missing-parens.patch: New file. * gnu/packages/emacs-xyz.scm (emacs-git-email)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-05-01gnu: tor: Update to 0.4.7.7.Tobias Geerinckx-Rice
* gnu/packages/tor.scm (tor): Update to 0.4.7.7. [source]: Remove patch. * gnu/packages/patches/tor-sandbox-i686.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2022-05-06gnu: Add dezyne.Jan (janneke) Nieuwenhuizen
* gnu/packages/dezyne.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2022-05-06gnu: nftables: Update to 1.0.2.kiasoc5
* gnu/packages/patches/nftables-fix-makefile.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/linux.scm (nftables): Update to 1.0.2. [source]: Add patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06gnu: ytfzf: Update to 2.3.Michael Rohleder
* gnu/packages/patches/ytfzf-programs.patch, * gnu/packages/patches/ytfzf-updates.patch: Delete patches. * gnu/local.mk (dist_patch_DATA): Unregister them. * gnu/packages/image-viewers.scm (ytfzf): Update to 2.3. [source]: Delete patches. [arguments]: Remove phase 'patch-script. Add phase 'install-addons, 'wrap-program. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-03gnu: dealii: Update to 9.3.3.Paul A. Patience
* gnu/packages/maths.scm (dealii): Update to 9.3.3. * gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch: Delete file. * gnu/packages/patches/dealii-fix-sundials.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-29gnu: openssh: Trust Guix store directoryAlexey Abramov
* gnu/local.mk (dist_patch_DATA): Add the patch * gnu/packages/patches/openssh-trust-guix-store-directory.patch: Patch it * gnu/packages/ssh.scm (openssh[source]): Use it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-28gnu: flatpak: Do not leak GDK_PIXBUF_MODULE_FILE into the sandbox.Zhu Zihao
Fixes <https://issues.guix.gnu.org/54784>. * gnu/packages/patches/flatpak-unset-gdk-pixbuf-for-sandbox.patch: New file. * gnu/local.mk (dist_patch_DATA): Add corresponding entry. * gnu/packages/package-management.scm (flatpak)[source]: Use patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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