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2017-03-30Merge branch 'master' into core-updatesMarius Bakke
Most conflicts are from 6fd52309b8f52c9bb59fccffac53e029ce94b698.
2017-03-29gnu: thefuck: Upgrade to 3.15 and enable tests.Eric Bavier
* gnu/packages/patches/thefuck-test-environ.patch: New patch. * gnu/packages/admin.scm (thefuck): Upgrade to 3.15. [source]: Use patch. [arguments]: Remove '#:tests? #f'. Move 'check' phase after 'install'. * gnu/local.mk (dist_patch_DATA): Add patch.
2017-03-30gnu: Use HTTPS for almost all gnu.org HOME-PAGEs.Tobias Geerinckx-Rice
All HTTP gnu.org (and supported subdomain) HOME-PAGEs changed to HTTPS.
2017-03-16Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner
2017-03-15gnu: Use INSTALL-FILE where appropriate.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (wpa-supplicant-minimal): Substitute the simpler INSTALL-FILE for COPY-FILE when invoked with redundant arguments. * gnu/packages/bioinformatics.scm (couger, aragorn, express-beta-diversity, edirect, fasttree, rsem, samtools-0.1): Likewise. * gnu/packages/code.scm (withershins): Likewise. * gnu/packages/conky.scm (conky): Likewise. * gnu/packages/debug.scm (delta, american-fuzzy-lop): Likewise. * gnu/packages/emacs.scm (emacs-mit-scheme-doc): Likewise. * gnu/packages/engineering.scm (librecad): Likewise.
2017-03-13Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner
2017-03-09gnu: inetutils: Disable parallel tests.Marius Bakke
* gnu/packages/admin.scm (inetutils)[arguments]: Add #:parallel-tests? #f.
2017-03-09Merge branch 'master' into core-updatesLudovic Courtès
2017-03-09gnu: inetutils: Set the $localstatedir.Leo Famulari
This is a followup to commit 6f5d28f9d05aaa9743b3aac6bceb2c6323122d2d. * gnu/packages/admin.scm (inetutils)[arguments]: Pass '--localstatedir=/var' to #:configure-flags.
2017-03-08gnu: inetutils: Enable tests.Maxim Cournoyer
* gnu/packages/admin.scm (inetutils)[arguments]: Remove '#:tests? #f' and #:configure-flags. [native-inputs]: Add net-tools. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-03Merge branch 'python-tests'Marius Bakke
2017-03-02gnu: cbatticon: Update to 1.6.5.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (cbatticon): Update to 1.6.5.
2017-03-02gnu: di: Update to 4.43.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (di): Update to 4.43.
2017-02-27Merge branch 'master' into python-testsMarius Bakke
2017-02-23gnu: shadow: Fix CVE-2017-2616.Leo Famulari
* gnu/packages/patches/shadow-CVE-2017-2616.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/admin.scm (shadow): Use it.
2017-02-20Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner
2017-02-13Merge branch 'master' into python-testsMarius Bakke
2017-02-11gnu: shadow: Update to 4.4.ng0
* gnu/packages/admin.scm (shadow): Update to 4.4. [source]: Adjust URL. * gnu/packages/patches/shadow-4.4-su-snprintf-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patch. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-02-11gnu: shadow: Use 'modify-phases'.ng0
* gnu/packages/admin.scm (shadow): Use 'modify-phases'.
2017-02-10gnu: Add sedsed.ng0
* gnu/packages/admin.scm (sedsed): New variable. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-02-10Merge branch 'master' into core-updatesLudovic Courtès
2017-02-09gnu: isc-dhcp: Update bundled bind to 9.9.9-P6.Efraim Flashner
* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.9-P6.
2017-02-06gnu: tcpdump: Fetch source from tcpdump.org.Leo Famulari
* gnu/packages/admin.scm (tcpdump)[source]: Remove temporary alternate URL.
2017-02-02gnu: thefuck: Fix execution.Eric Bavier
Follow-up to 4a6b2a21bf36a6d0170d7568073f0a03ef3004f3 * gnu/packages/admin.scm (thefuck): Fix 'inputs' -> 'native-inputs'.
2017-02-02Merge branch 'master' into core-updatesLeo Famulari
2017-01-30gnu: tcpdump: Update to 4.9.0 [security fixes].Leo Famulari
Fixes CVE-2016-{7922,7923,7924,7925,7926,7927,7928,7929,7930,7931,7932,7933 7934,7935,7936,7937,7938,7939,7940,7973,7974,7975,7983,7984,7985,7986,7992,7993, 8574,8575} and CVE-2017-{5202,5203,5204,5205,5341,5342,5482,5483,5484,5485, 5486}. * gnu/packages/admin.scm (tcpdump): Update to 4.9.0. [source]: Add alternate URL and set the file-name.
2017-01-30gnu: libpcap: Update to 1.8.1.Leo Famulari
* gnu/packages/admin.scm (libpcap): Update to 1.8.1.
2017-01-23Merge branch 'master' into core-updatesLudovic Courtès
2017-01-19gnu: ansible: Update to 2.2.1 [fixes CVE-2016-9587].Ludovic Courtès
* gnu/packages/admin.scm (ansible): Update to 2.2.1.
2017-01-19gnu: Move Kerberos implemetations to (gnu packages kerberos).Ludovic Courtès
* gnu/packages/mit-krb5.scm: Remove. * gnu/packages/shishi.scm: Remove. * gnu/packages/kerberos.scm: New file, from the concatenation of these two. * gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly. * gnu/packages/admin.scm, gnu/packages/cyrus-sasl.scm, gnu/packages/gnome.scm, gnu/packages/gnuzilla.scm, gnu/packages/gsasl.scm, gnu/packages/java.scm, gnu/packages/networking.scm, gnu/packages/nfs.scm, gnu/packages/onc-rpc.scm, gnu/packages/ssh.scm, gnu/packages/web.scm: Adjust accordingly.
2017-01-13Merge branch 'master' into python-testsLeo Famulari
2017-01-11gnu: isc-dhcp: Update bundled bind to 9.9.9-P5 [security fixes].Leo Famulari
Fixes CVE-2016-{9131,9147,9444}. * gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.9-P5.
2017-01-06Merge branch 'master' into core-updatesLeo Famulari
2017-01-04gnu: Use HTTPS for all sourceforge.net home pages.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (mingetty, clusterssh)[home-page]: Use HTTPS. * gnu/packages/audio.scm (libbs2b, soxr)[home-page]: Likewise. * gnu/packages/bioinformatics.scm (bless)[home-page]: Likewise. * gnu/packages/display-managers.scm (slim)[home-page]: Likewise. * gnu/packages/games.scm (extremetuxracer)[home-page]: Likewise. * gnu/packages/ghostscript.scm (gs-fonts)[home-page]: Likewise. * gnu/packages/haskell.scm (ghc-regex-base, ghc-regex-posix, ghc-regex-compat)[home-page]: Likewise. * gnu/packages/image.scm (imlib2)[home-page]: Likewise. * gnu/packages/libreoffice.scm (librevenge, libcmis, libodfgen, libmwaw) [home-page]: Likewise. * gnu/packages/linux.scm (hdparm, acpid, libavc1394, rng-tools) [home-page]: Likewise. * gnu/packages/mail.scm (esmtp)[home-page]: Likewise. * gnu/packages/mp3.scm (ripperx)[home-page]: Likewise. * gnu/packages/onc-rpc.scm (libtirpc)[home-page]: Likewise. * gnu/packages/perl.scm (perl-czplib)[home-page]: Likewise. * gnu/packages/python.scm (python-pyasn1-modules)[home-page]: Likewise. * gnu/packages/xdisorg.scm (xosd)[home-page]: Likewise.
2017-01-03gnu: sudo: Update to 1.8.19p1.Efraim Flashner
* gnu/packages/admin.scm (sudo): Update to 1.8.19p1.
2016-12-21gnu: nmap: Update to 7.40.Marius Bakke
* gnu/packages/admin.scm (nmap): Update to 7.40.
2016-12-19gnu: thefuck: Correct inputs and disable tests.Marius Bakke
* gnu/packages/admin.scm (thefuck)[arguments]: Set #:tests? #f. [inputs]: Move everything to ... [propagated-inputs]: ... here. Remove duplicate [inputs] and python-setuptools. [native-inputs]: Add python-pytest, python-pytest-mock and python-mock.
2016-12-11gnu: sunxi-tools: Update to 1.4.2.Danny Milosavljevic
* gnu/packages/admin.scm (sunxi-tools): Update to 1.4.2. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-04gnu: shepherd: Update to 0.3.2.Ludovic Courtès
* gnu/packages/admin.scm (shepherd): Update to 0.3.2. [properties]: New field.
2016-11-22gnu: progress: Update to 0.13.1.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (progress): Update to 0.13.1. [native-inputs]: Add pkg-config and which. [arguments]: Drop LDFLAGS (now handled by pkg-config) from #:make-flags.
2016-11-15gnu: thefuck: Fix build.Hartmut Goebel
Requires setuptools >= 17.1 due to some features used, while our python currently only includes 12.0. * gnu/packages/admin.scm (thefuck): Add setuptools to native-inputs.
2016-11-15gnu: Remove python-setuptools and python2-setuptools from inputs (part 2)Hartmut Goebel
This patch contains the changes where removing setuptools from the inputs affected some code-lines beside. * gnu/packages/admin.scm (ansible): Remove all [inputs], [native-inputs] and [propagated-inputs] where python-setuptools or python2-setuptools are the sole entries. Remove python-setuptools and python2-setuptools listed on a line by its own from [inputs], [native-inputs] and [propagated-inputs]. * gnu/packages/backup.scm (duplicity): Likewise. * gnu/packages/bioinformatics.scm (bamm, python2-pybedtools, python2-bx-python, python2-dendropy, python-pysam, python2-pysam, clipper, crossmap, cutadapt, deeptools, grit, idr, python2-warpedlmm, pbtranscript-tofu, seqmagick): Likewise. * gnu/packages/docbook.scm (dblatex): Likewise. * gnu/packages/freedesktop.scm (python-pyxdg, python2-pyxdg): Likewise. * gnu/packages/lirc.scm (python2-lirc): Likewise. * gnu/packages/mp3.scm (eyed3): Likewise. * gnu/packages/nutrition.scm (gourmet): Likewise. * gnu/packages/openstack.scm (python-hacking, python2-hacking, python-os-testr, python2-os-testr, python-stevedore, python2-stevedore, python-tempest-lib, python2-tempest-lib, python-oslo.log, python2-oslo.log, python-keystoneclient, python2-keystoneclient): Likewise. * gnu/packages/password-utils.scm (assword): Likewise. * gnu/packages/python.scm (python-passlib, python2-passlib, python-babel, python2-babel, python-parse-type, python-pytest, python2-pytest, python-scripttest, python2-scripttest, python-testtools, python2-testtools, python-testscenarios, python2-testscenarios, python-subunit, python2-subunit, python-pbr-0.11, python-pbr, python2-pbr, python-testrepository, python2-testrepository, behave, python-wheel, python2-wheel, python-requests, python2-requests, python-jsonschema, python2-jsonschema, python-pyjwt, python2-pyjwt, python-virtualenv, python2-virtualenv, python-jinja2, python2-jinja2, python-joblib, python2-joblib, python-sphinx, python2-sphinx, python-feedgenerator, python2-feedgenerator, python-scikit-image, python2-scikit-image, python-redis, python2-redis, python2-fastlmm, python-numpydoc, python2-numpydoc, python-matplotlib, python2-matplotlib, python2-pysnptools, python-rpy2, python2-rpy2, python-pillow, python2-pillow, python-pycparser, python2-pycparser, python-cffi, python2-cffi, python-cairocffi, python2-cairocffi, python-drmaa, python2-drmaa, python-pathpy, python2-pathpy, python-simplegeneric, python2-simplegeneric, python-ipython, python2-ipython, python-apsw, python2-apsw, python-lxml, python2-lxml, python-networkx, python2-networkx, python-pyzmq, python2-pyzmq, python-mccabe, python2-mccabe, python-mccabe-0.2.1, python-flake8, python2-flake8, python-flake8-2.2.4, python-mistune, python2-mistune, python-ptyprocess, python2-ptyprocess, python-llfuse, python2-llfuse, python-webob, python2-webob, python-xlrd, python2-xlrd, python-tables, python2-tables, python-pip, python2-pip, python-libarchive-c, python2-libarchive-c, python-docopt, python2-docopt, python-pyrfc3339, python2-pyrfc3339, python-configobj, python2-configobj, python-clint, python2-clint, python-rply, python2-rply, python2-rpython, python-widgetsnbextension, python2-widgetsnbextension jupyter, python-jupyter-console, python2-jupyter-console, python-hy, python2-hy, python-urllib3, python2-urllib3, python-rsa, python2-rsa, python-tox, python2-tox, python2-hypothesis, python-paste, python2-paste, python-pastescript, python2-pastescript, python2-unicodecsv, python-pkgconfig, python2-pkgconfig, python2-rope, python-sqlparse, python2-sqlparse, python-gevent, python2-gevent, python-tabulate, python2-tabulate, python-arrow, python2-arrow, python-cleo, python2-cleo, python-fake-factory, python2-fake-factory, ptpython): Likewise. * gnu/packages/rdf.scm (python-rdflib, python2-rdflib): Likewise. * gnu/packages/terminals.scm (asciinema): Likewise. * gnu/packages/version-control.scm (git-annex-remote-hubic): Likewise. * gnu/packages/xdisorg.scm (arandr): Likewise.
2016-11-15gnu: Remove python-setuptools and python2-setuptools from inputs (part 1b)Hartmut Goebel
This patch contains the changes in all modules beside python.scm where removing setuptools from the inputs could be achieved by removing complete lines. * gnu/packages/admin.scm (graphios, thefuck): Remove all [inputs], [native-inputs] and [propagated-inputs] where python-setuptools or python2-setuptools are the sole entries. Remove python-setuptools and python2-setuptools listed on a line by its own from [inputs], [native-inputs] and [propagated-inputs]. * gnu/packages/backup.scm (rdiff-backup): Likewise. * gnu/packages/bioinformatics.scm (htseq, macs, python2-pbcore, rseqc, multiqc): Likewise. * gnu/packages/django.scm (python-django, python2-django, python-django-simple-math-captcha, python2-django-simple-math-captcha): Likewise. * gnu/packages/docker.scm (python-docker-py, docker-compose): Likewise. * gnu/packages/game-development.scm (python-pygame): Likewise. * gnu/packages/key-mon.scm (key-mon): Likewise. * gnu/packages/mail.scm (khard): Likewise. * gnu/packages/music.scm (beets, python2-pyechonest): Likewise. * gnu/packages/openstack.scm (python-bandit, python2-bandit, python-debtcollector, python2-debtcollector, python-mox3, python2-mox3, python-os-client-config, python2-os-client-config, python-oslo.config, python2-oslo.config, python-oslo.context, python2-oslo.context, python-oslo.i18n, python2-oslo.i18n, python-oslo.serialization, python2-oslo.serialization, python-oslosphinx, python2-oslosphinx, python-oslotest, python2-oslotest, python-oslo.utils, python2-oslo.utils, python-swiftclient, python2-swiftclient): Likewise. * gnu/packages/pdf.scm (pdfposter): Likewise. * gnu/packages/tls.scm (python-acme, python2-acme): Likewise.
2016-11-07Merge branch 'master' into core-updatesMark H Weaver
2016-11-06gnu: nmap: Update to 7.31.Marius Bakke
* gnu/packages/admin.scm (nmap): Update to 7.31. [arguments]: Add phase 'patch-Makefile' to prevent lua from being built.
2016-11-06Merge branch 'master' into core-updatesMark H Weaver
2016-11-03gnu: sunxi-tools: Update to 1.4.1.Danny Milosavljevic
* gnu/packages/admin.scm (sunxi-tools): Update to 1.4.1. [arguments]: Add "CC=gcc" "all" to #:make-flags. Remove 'fix-Makefile' phase. Add 'install' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-02Merge branch 'master' into core-updatesLeo Famulari
2016-11-01gnu: isc-dhcp: Update to 4.3.5 [fixes CVE-2016-8864].Leo Famulari
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.5. Update bundled 'bind' to 9.9.9-P4.
2016-10-23gnu: audit: Use GnuTLS instead of OpenSSL.Leo Famulari
* gnu/packages/admin.scm (audit)[inputs]: Replace openssl with gnutls.
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