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2024-04-22gnu: r-bayseq: Update to 2.36.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.36.2. Change-Id: Ic709181286a25fb2540d73991196cd54302f6fa2
2024-04-22gnu: r-gsva: Update to 1.50.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.50.5. Change-Id: I18584e8766e8377f18321b4a4991edbbc933cbe2
2024-04-22gnu: r-alevinqc: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.18.1. Change-Id: I84abb3751c44f4679ebf6c5c39f3b7d0027f002e
2024-04-22gnu: r-metap: Update to 1.10.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-metap): Update to 1.10. Change-Id: I1890c61b9a20d61a55bf76d61278729b0ae4356a
2024-04-10gnu: r-bioconcotk: Update to 1.22.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.22.2. Change-Id: I473dc8d160d6f04eb3d90b747395d6ff73e3e9db
2024-04-10gnu: r-monocle: Update to 2.30.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.30.1. [propagated-inputs]: Remove r-qlcmatrix. Change-Id: Id3876045fe925a82892cd2dbe7f56a0b475f2226
2024-04-10gnu: r-seqarray: Update to 1.42.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.42.4. Change-Id: I3663ed7550bdd11e2f23b0497c7bbeb2d5c6cd41
2024-04-10gnu: r-gsva: Update to 1.50.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.50.2. Change-Id: I24cb1b80f6afc34c970f402292a326e7ec592534
2024-04-10gnu: r-annotationhub: Update to 3.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.10.1. Change-Id: Ibe0b4d197a17514072febc97ef8eac684d884b67
2024-04-10gnu: r-bambu: Update to 3.4.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.4.1. Change-Id: I888802cc0b75876378c59abba72442bb5927010a
2024-04-10gnu: r-codedepends: Update to 0.6.6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-codedepends): Update to 0.6.6. [native-inputs]: Add r-knitr. Change-Id: I38378f3c7406166007da48eed749526d6ddb9277
2024-04-10gnu: r-valr: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-valr): Update to 0.8.0. Change-Id: I9d5a7d2c3600f82db4b291af1485f9d075d26627
2024-04-02gnu: r-tcgabiolinks: Update to 2.30.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.30.4. Change-Id: Ib0f5a7f9855c21b378060b7a9e1af031effda624
2024-04-02gnu: r-bionero: Update to 1.10.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.10.3. Change-Id: I03b6f9259c05a6915d3e5425ab9165067c400f03
2024-04-02gnu: r-catalyst: Update to 1.26.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.26.1. Change-Id: I32cff6ff74a76770212ab24a08805baf00bb7adc
2024-04-02gnu: r-biocfilecache: Update to 2.10.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.10.2. Change-Id: I23fdcff4ba85610aeee21504ff9313c6163d46bd
2024-04-02gnu: r-seqarray: Update to 1.42.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.42.3. Change-Id: I8fedfd9709519ad2b1533840747402a56a4af2b5
2024-04-02gnu: r-microbiomestat: Update to 1.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-microbiomestat): Update to 1.2. [propagated-inputs]: Remove r-phyloseq. Change-Id: I3a0133e9318f86d162ca562708fbf5fe6703407d
2024-03-27gnu: r-bionero: Update to 1.10.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.10.2. Change-Id: I419476f683156fa612b35680c5de3f8044851439
2024-03-27gnu: r-flowworkspace: Update to 4.14.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.14.3. Change-Id: I2a717e99d7b71df0c3774ad235e0fe87f5b2aa19
2024-03-27gnu: r-rprotobuflib: Update to 2.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.14.1. Change-Id: I10d2e5f7d7e55039085c51592b2046a340810a0a
2024-03-27gnu: r-flowcore: Update to 2.14.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.14.2. Change-Id: I61158d6b9243c4386149364ef0d36a0d1bd5e4b8
2024-03-27gnu: r-trackviewer: Update to 1.38.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-trackviewer): Update to 1.38.2. Change-Id: I1b26ba59abbba23d8215a16fdf9bbb7e49e54260
2024-03-27gnu: r-dittoseq: Update to 1.14.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.14.3. Change-Id: I85f76e70f0b275749d622dad28346c0912e09b57
2024-03-27gnu: r-diffcyt: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.22.1. Change-Id: Id1d88a4a660908c949107ffaf3ec33e5d69bff11
2024-03-27gnu: r-hdcytodata: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hdcytodata): Update to 1.22.1. Change-Id: I7c159709261c7862a171aac14962b4b18cf1459f
2024-03-27gnu: r-abn: Update to 3.0.6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-abn): Update to 3.0.6. [native-inputs]: Replace r-r-rsp with r-knitr. Change-Id: Ic102988a2017ad0d073df3bd88dcc75aa131c1d3
2024-03-19gnu: r-genomeinfodb: Update to 1.38.8.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.8. [propagated-inputs]: Add r-rcurl. Change-Id: Icd046f9d32486d1ec104d5e564177382616b7290
2024-03-15gnu: r-clusterprofiler: Update to 4.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.10.1. Change-Id: I05b41c27d1e1ac8b2887845df5a4a75d45513929
2024-03-15gnu: r-zlibbioc: Update to 1.48.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.48.2. [native-inputs]: Add r-knitr. Change-Id: Iee1c599473d30532660eb3770cf471ff979530dd
2024-03-15gnu: r-stringdb: Update to 2.14.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.14.3. [propagated-inputs]: Remove r-rcurl; add r-httr. Change-Id: Id46873bee69cdd1047002db3505ff5420097e9e9
2024-03-15gnu: r-gsva: Update to 1.50.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.50.1. Change-Id: Ib298992cb9ea4615fe3888e799c332e778a7b5be
2024-03-15gnu: r-genomicfeatures: Update to 1.54.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.54.4. [propagated-inputs]: Remove r-rcurl; add r-httr and r-rjson. Change-Id: Iaed5177d04bc1c292dfad607f82401f45cfd02bc
2024-03-15gnu: r-genomeinfodb: Update to 1.38.7.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.7. [propagated-inputs]: Remove r-rcurl. Change-Id: Ifc265a49ed946f3548ff279b930a8346c42025a8
2024-03-15gnu: r-deseq2: Update to 1.42.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.42.1. Change-Id: Ida0b7ad662c44b2b12af487bb6aa8364874ce3da
2024-03-15gnu: r-biostrings: Update to 2.70.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.70.3. Change-Id: I4a921a148d9f54be13967ed0e3092353a683f20f
2024-03-15gnu: r-coregx: Update to 2.6.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-coregx): Update to 2.6.1. Change-Id: Icb0eb5a7697811f4272cda3d42d3c428bb59bd23
2024-03-15gnu: r-asics: Update to 2.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-asics): Update to 2.18.1. Change-Id: I760771fd8fe57984ae1d0c96b72cb63562a1b43e
2024-03-06gnu: r-snprelate: Update to 1.36.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-snprelate): Update to 1.36.1. Change-Id: I5cf14d463c0f4ca3707a8ac33c7a06baa4337789
2024-03-06gnu: r-s4arrays: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.2.1. Change-Id: I68c0ee03264073e8816fc92fbaa97ebb6c5036ed
2024-03-06gnu: r-ggcyto: Update to 1.30.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.30.2. Change-Id: I29c123aa60347b491412631f036923c3bbb7d6c9
2024-03-06gnu: r-ggtree: Update to 3.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.10.1. Change-Id: I62eec59a6be3f806261198a1d39eb38ee86a9a79
2024-03-06gnu: r-nebulosa: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-nebulosa): Update to 1.12.1. [propagated-inputs]: Remove r-seurat; add r-ggrastr and r-seuratobject. Change-Id: If301102ec02ce618ed1ebeff17a9d7e0845e847c
2024-03-06gnu: r-conos: Update to 1.5.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-conos): Update to 1.5.2. Change-Id: Ia2192481d7d829ef47fec23d4fc8c028abce7098
2024-02-26gnu: r-dmrseq: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.22.1. Change-Id: I7c05a4927a3984917c6de7bc5daa3f28794894d7
2024-02-26gnu: r-beachmat: Update to 2.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.18.1. Change-Id: I854c4c21cad66e3fb2bfe63fe01c31c3aff7d109
2024-02-26gnu: r-hdf5array: Update to 1.30.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.30.1. Change-Id: I48d733554b9c74e10d29b123008ba6d20fa85641
2024-02-26gnu: r-variancepartition: Update to 1.32.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.32.5. Change-Id: I9195cbe28f85001bcd91fa3d57f0017db5b352b7
2024-02-26gnu: r-a4: Update to 1.50.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-a4): Update to 1.50.1. Change-Id: If07b255590ad99146a81729af073aac67cd535d4
2024-02-26gnu: r-chippeakanno: Update to 3.36.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.36.1. Change-Id: I133f7ca3032f5f5722a8d5d9cbf1bf1da42ff4a9