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2020-12-17gnu: r-nmf: Move from "annotation" to "package" section.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-nmf): Move variable.
2020-12-17gnu: r-deconstructsigs: Move from "annotation" to "package" section.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-deconstructsigs): Move variable.
2020-12-17gnu: r-pasilla: Move from "annotation" to "experiment" section.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-pasilla): Move variable.
2020-12-17gnu: r-ideoviz: Move from "annotation" to "package" section.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ideoviz): Move variable.
2020-12-17gnu: r-genelendatabase: Move from "annotation" to "experiment" section.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genelendatabase): Move variable.
2020-12-17gnu: r-bluster: Move from "annotation" to "package" section.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bluster): Move variable.
2020-12-17gnu: r-cummerbund: Move from "experiment" to "package" section.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cummerbund): Move variable.
2020-12-17gnu: r-coverageview: Move from "experiment" to "package" section.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-coverageview): Move variable.
2020-12-17gnu: Add r-org-eck12-eg-db.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-org-eck12-eg-db): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-12-17gnu: Add r-pathview.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-pathview): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-12-17gnu: Add r-kegggraph.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-kegggraph): New variable.
2020-12-17gnu: Add r-gagedata.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-gagedata): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-12-09gnu: r-scuttle: Update to 1.0.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.0.3. [propagated-inputs]: Add r-genomicranges.
2020-12-09gnu: r-beachmat: Update to 2.6.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.2.
2020-12-09gnu: r-cicero: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.8.1.
2020-12-09gnu: r-biosigner: Update to 1.18.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.18.2.
2020-12-09gnu: r-biocneighbors: Update to 1.8.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.8.2. [propagated-inputs]: Remove r-rcppannoy.
2020-12-09gnu: r-diffbind: Update to 3.0.8.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.8.
2020-12-09gnu: r-rhtslib: Propagate zlib.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhtslib)[inputs]: Move zlib from here... [propagated-inputs]: ...to here. (r-variantannotation, r-rsamtools, r-bamsignals, r-rhdf5, r-methylkit)[inputs]: Remove zlib. * gnu/packages/bioconductor.scm (r-diffbind, r-quasr, r-cytolib, r-ncdfflow, r-flowworkspace, r-seqbias)[inputs]: Remove zlib.
2020-12-09gnu: r-delayedmatrixstats: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.1. [propagated-inputs]: Add r-matrixgenerics.
2020-12-09gnu: r-bigmelon: Update to 1.16.0.zimoun
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.16.0.
2020-12-09gnu: r-watermelon: Update to 1.34.0.zimoun
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.34.0.
2020-12-09gnu: r-yarn: Update to 1.16.0.zimoun
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.16.0.
2020-12-09gnu: r-quantro: Update to 1.24.0.zimoun
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.24.0.
2020-12-09gnu: r-lumi: Update to 2.42.0.zimoun
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.42.0.
2020-12-09gnu: r-methylumi: Update to 2.36.0.zimoun
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.36.0.
2020-12-09gnu: r-minfi: Update to 1.36.0.zimoun
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.36.0.
2020-12-09gnu: Add r-catalyst.zimoun
* gnu/packages/bioconductor.scm (r-catalyst): New variable.
2020-12-09gnu: r-ggcyto: Update to 1.18.0.zimoun
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.18.0.
2020-12-09gnu: r-scdd: Update to 1.14.0.zimoun
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.14.0.
2020-12-09gnu: r-chipcomp: Update to 1.20.0.zimoun
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.20.0.
2020-12-09gnu: r-pcatools: Update to 2.2.0.zimoun
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.2.0.
2020-12-09gnu: r-scran: Update to 1.18.0.zimoun
* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.0. [propagated-inputs]: Add r-bluster, r-scuttle. Remove r-iranges. Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09gnu: r-scater: Update to 1.18.3.zimoun
* gnu/packages/bioconductor.scm (r-scater): Update to 1.18.3. [propagated-inputs]: Add r-gridextra, r-scutlle. Remove r-beachmat, r-rcpp. Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09gnu: Add r-scuttle.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scuttle): New variable.
2020-12-09gnu: r-delayedmatrixstats: Update to 1.12.0.zimoun
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.0. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
2020-12-09gnu: r-singlecellexperiment: Update to 1.12.0.zimoun
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.12.0.
2020-12-09gnu: r-yapsa: Update to 1.16.0.zimoun
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.16.0.
2020-12-09gnu: r-biocsingular: Update to 1.6.0.zimoun
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.6.0.
2020-12-09gnu: r-genomicinteractions: Update to 1.24.0.zimoun
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.24.0.
2020-12-09gnu: r-interactionset: Update to 1.18.0.zimoun
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.0.
2020-12-09gnu: Add r-sparsematrixstats.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sparsematrixstats): New variable.
2020-12-09gnu: Add r-bluster.Roel Janssen
* gnu/packages/bioconductor.scm (r-bluster): New variable.
2020-12-09gnu: r-annaffy: Update to 1.62.0.Roel Janssen
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.62.0.
2020-12-09gnu: Add r-msmstests.zimoun
* gnu/packages/bioconductor.scm (r-msmstests): New variable.
2020-12-09gnu: Add r-msmseda.zimoun
* gnu/packages/bioconductor.scm (r-msmseq): New variable.
2020-12-09gnu: r-beachmat: Update to 2.6.1.Roel Janssen
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.1.
2020-12-09gnu: r-ncdfflow: Fix r-rhdf5libs link.zimoun
* gnu/packages/bioconductor.scm (r-ncdfflow): [arguments]: Avoid to have a plain directory on the list of libraries to link. Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09gnu: r-cytoml: Fix r-rhdf5libs linking.zimoun
* gnu/packages/bioconductor.scm (r-cytoml): [arguments]: Avoid to have a plain directory on the list of libraries to link.
2020-12-09gnu: r-flowworkspace: Fix r-rhdf5libs linking.zimoun
* gnu/packages/bioconductor.scm (r-flowworkspace): [arguments]: Avoid to have a plain directory on the list of libraries to link.
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