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path: root/gnu/packages/bioconductor.scm
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2019-12-09gnu: r-metap: Update to 1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-metap): Move this from here... * gnu/packages/bioconductor.scm (r-metap): ...to here and update to 1.2. [propagated-inputs]: Add r-mutoss and r-tfisher.
2019-12-09gnu: Add r-mutoss.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mutoss): New variable.
2019-12-04gnu: r-all: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-all)[source]: Use bioconductor-uri.
2019-12-04gnu: r-hsmmsinglecell: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hsmmsinglecell)[source]: Use bioconductor-uri.
2019-12-04gnu: r-arrmdata: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-arrmdata)[source]: Use bioconductor-uri.
2019-12-04gnu: r-abadata: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-abadata)[source]: Use bioconductor-uri.
2019-12-04gnu: r-do-db: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-do-db)[source]: Use bioconductor-uri.
2019-12-04gnu: r-illuminahumanmethylationepicmanifest: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-illuminahumanmethylationepicmanifest)[source]: Use bioconductor-uri.
2019-12-04gnu: r-fdb-infiniummethylation-hg19: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19)[source]: Use bioconductor-uri.
2019-12-04gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene)[source]: Use bioconductor-uri. [arguments]: Enable substitution.
2019-12-04gnu: r-txdb-mmusculus-ucsc-mm9-knowngene: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene)[source]: Use bioconductor-uri.
2019-12-04gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene)[source]: Use bioconductor-uri.
2019-12-04gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)[source]: Use bioconductor-uri. [arguments]: Enable substitution.
2019-12-04gnu: r-genelendatabase: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genelendatabase)[source]: Use bioconductor-uri.
2019-12-04gnu: r-bsgenome-hsapiens-ucsc-hg19: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19)[source]: Use bioconductor-uri. [arguments]: Enable substitution.
2019-12-04gnu: r-org-mm-eg-db: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-mm-eg-db)[source]: Use bioconductor-uri.
2019-12-04gnu: r-org-hs-eg-db: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-hs-eg-db)[source]: Use bioconductor-uri.
2019-12-04gnu: r-org-dr-eg-db: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-dr-eg-db)[source]: Use bioconductor-uri.
2019-12-04gnu: r-org-dm-eg-db: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-dm-eg-db)[source]: Use bioconductor-uri.
2019-12-04gnu: r-org-ce-eg-db: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-ce-eg-db)[source]: Use bioconductor-uri.
2019-12-04gnu: r-bsgenome-mmusculus-ucsc-mm10: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10)[source]: Use bioconductor-uri. [arguments]: Enable substitution.
2019-12-04gnu: r-bsgenome-mmusculus-ucsc-mm9-masked: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked)[source]: Use bioconductor-uri.
2019-12-04gnu: r-bsgenome-mmusculus-ucsc-mm9: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9)[source]: Use bioconductor-uri. [arguments]: Enable substitution.
2019-12-04gnu: r-bsgenome-hsapiens-ucsc-hg19-masked: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked)[source]: Use bioconductor-uri.
2019-12-04gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5)[source]: Use bioconductor-uri. [arguments]: Enable substitution.
2019-12-04gnu: r-bsgenome-dmelanogaster-ucsc-dm3-masked: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3-masked)[source]: Use bioconductor-uri.
2019-12-04gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3)[source]: Use bioconductor-uri. [arguments]: Enable substitution.
2019-12-04gnu: r-bsgenome-dmelanogaster-ucsc-dm6: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm6)[source]: Use bioconductor-uri. [arguments]: Permit substitution.
2019-12-04gnu: r-bsgenome-celegans-ucsc-ce10: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10)[source]: Use bioconductor-uri. [arguments]: Permit substitution.
2019-11-11gnu: r-unifiedwmwqpcr: Fix typo in description.Vagrant Cascadian
* gnu/packages/bioconductor (r-unifiedwmwqpcr)[description]: Fix typo.
2019-10-21gnu: r-xcms: Update to 3.6.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.6.2.
2019-10-18gnu: r-mlinterfaces: Update to 1.64.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.64.1.
2019-10-15gnu: Add r-unifiedwmwqpcr.zimoun
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-10-15gnu: Add r-htqpcr.zimoun
* gnu/packages/bioconductor.scm (r-htqpcr): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-10-14gnu: Add r-phastcons100way-ucsc-hg19.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-phastcons100way-ucsc-hg19): New variable.
2019-10-06gnu: r-variancepartition: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.14.1. [propagated-inputs]: Add r-biocparallel.
2019-10-06gnu: r-mixomics: Update to 6.8.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.5.
2019-10-06gnu: r-regioner: Update to 1.16.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.5.
2019-09-15gnu: Add r-variancepartition.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-variancepartition): New variable.
2019-09-15gnu: Add r-wavetiling.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-wavetiling): New variable.
2019-09-15gnu: Add r-genomegraphs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomegraphs): New variable.
2019-09-15gnu: Add r-oligo.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-oligo): New variable.
2019-09-15gnu: Add r-affxparser.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affxparser): New variable.
2019-09-15gnu: Add r-variantfiltering.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-variantfiltering): New variable.
2019-09-15gnu: Add r-reqon.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-reqon): New variable.
2019-09-15gnu: Add r-seqbias.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-seqbias): New variable.
2019-09-15gnu: Add r-affycoretools.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affycoretools): New variable.
2019-09-15gnu: Add r-oligoclasses.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-oligoclasses): New variable.
2019-09-15gnu: Add r-reportingtools.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-reportingtools): New variable.
2019-09-15gnu: Add r-pfam-db.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-pfam-db): New variable.
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