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2022-01-20gnu: r-rbowtie: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rbowtie)[inputs]: Add zlib.
2022-01-20gnu: r-pasilla: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-pasilla)[source]: Use bioconductor-uri.
2022-01-11gnu: Add r-transcriptr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-transcriptr): New variable.
2022-01-07gnu: r-sanssouci: Add source file-name.Efraim Flashner
* gnu/packages/bioinformatics.scm (r-sanssourci)[source]: Add file-name field.
2022-01-06gnu: r-tximeta: Update to 1.12.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.12.4.
2022-01-06gnu: r-tcgabiolinks: Update to 2.22.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.22.2.
2022-01-06gnu: r-biodb: Update to 1.2.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.2.2.
2022-01-06gnu: r-sushi: Update to 1.32.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sushi): Update to 1.32.0.
2022-01-06gnu: r-bioassayr: Update to 1.32.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.32.1.
2022-01-06gnu: r-universalmotif: Update to 1.12.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.12.2.
2022-01-06gnu: r-cytolib: Update to 2.6.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.6.1.
2022-01-06gnu: r-clusterprofiler: Update to 4.2.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.1.
2022-01-06gnu: r-icobra: Update to 1.22.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.22.2.
2022-01-06gnu: r-destiny: Update to 3.8.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.8.0.
2022-01-06gnu: r-diffbind: Update to 3.4.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.3.
2022-01-06gnu: r-systempiper: Update to 2.0.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.5.
2022-01-06gnu: r-structuralvariantannotation: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.10.1.
2022-01-06gnu: r-genomicfeatures: Update to 1.46.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.46.3.
2022-01-06gnu: r-chipseeker: Update to 1.30.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.3.
2022-01-06gnu: r-biocparallel: Update to 1.28.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.3.
2022-01-06gnu: r-yapsa: Update to 1.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.20.1. [propagated-inputs]: Remove r-pmcmr; add r-pmcmrplus.
2022-01-05gnu: r-activedriverwgs: Update to 1.0.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.0.3.
2022-01-05gnu: r-activedriverwgs: Update to 1.1.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.1.2. [propagated-inputs]: Add r-bsgenome-hsapiens-ucsc-hg38, r-bsgenome-mmusculus-ucsc-mm9, and r-bsgenome-mmusculus-ucsc-mm10.
2022-01-05gnu: r-valr: Update to 0.6.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-valr): Move from here... * gnu/packages/bioconductor.scm (r-valr): ...to here. Update to 0.6.4. [propagated-inputs]: Add r-rtracklayer.
2021-12-16gnu: Add r-singler.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-singler): New variable.
2021-12-16gnu: Add r-celldex.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-celldex): New variable.
2021-12-14gnu: Add r-maftools.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-maftools): New variable.
2021-12-14gnu: Add r-tcgabiolinks.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tcgabiolinks): New variable.
2021-12-14gnu: Add r-tcgabiolinksgui-data.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): New variable.
2021-12-13Merge branch 'core-updates-frozen' into 'master'.Maxim Cournoyer
At last!
2021-12-13gnu: Further simplify package inputs.Ludovic Courtès
This is the result of running: ./pre-inst-env guix style --input-simplification=safe and manually undoing changes on a dozen of packages to reduce rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.)
2021-12-13gnu: Simplify package inputs.Ludovic Courtès
This commit was obtained by running: ./pre-inst-env guix style without any additional argument.
2021-12-13gnu: Add r-chromvarmotifs.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-chromvarmotifs): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-12-13gnu: Add r-sanssouci.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sanssouci): New variable.
2021-12-13gnu: Add r-isoformswitchanalyzer.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): New variable.
2021-12-13gnu: Add r-drimseq.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-drimseq): New variable.
2021-12-13gnu: Add r-dearseq.Marcel Schilling
* gnu/packages/bioconductor.scm (r-dearseq): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-12-03gnu: r-flowclust: Add gsl.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowclust)[inputs]: Remove accidentally committed comment character.
2021-12-02gnu: Add r-scdblfinder.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scdblfinder): New variable.
2021-12-01gnu: Add r-phyloseq.Nicolas Vallet
* gnu/packages/cran.scm (r-phyloseq): New variable Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-11-30gnu: Add r-fmcsr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-fmcsr): New variable.
2021-11-27gnu: Add r-xmapbridge.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-xmapbridge): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-11-27gnu: Add r-xina.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-xina): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-11-27gnu: Add r-stringdb.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-stringdb): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-11-26gnu: Add r-derfinderhelper.zimoun
* gnu/packages/bioconductor.scm (r-derfinderhelper): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-24gnu: r-s4vectors: Update to 0.32.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.3.
2021-11-24gnu: r-mixomics: Update to 6.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.18.1.
2021-11-24gnu: r-xcms: Update to 3.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.16.1.
2021-11-24gnu: r-dose: Update to 3.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dose): Update to 3.20.1.
2021-11-24gnu: r-genomicranges: Update to 1.46.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.46.1.
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