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2021-03-15Revert some commits that caused `guix pull` to fail.Leo Famulari
This reverts commits 821e6439212f8e94580674eaaff2ce6752cd3b18 through 8f9fd9b70c7bf166d96a4b1dc8b427f8cdf040b5. Specifically, these commits caused the build failure of guix-package-cache.drv like this: ------ (repl-version 0 1 1) Generating package cache for '/gnu/store/vyz7q26kxxd4z70m24rkkqqhaizdla7g-profile'... (exception unbound-variable (value #f) (value "Unbound variable: ~S") (value (r-biobase)) (value #f))
2021-03-15gnu: r-biocparallel: Build reproducibly.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocparallel)[arguments]: Add phase "make-reproducible".
2021-03-15gnu: r-delayedarray: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-delayedarray): Move from here... * gnu/packages/bioconductor.scm (r-delayedarray): ...to here.
2021-03-15gnu: r-rsamtools: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-rsamtools): Move from here... * gnu/packages/bioconductor.scm (r-rsamtools): ...to here.
2021-03-15gnu: r-biostrings: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-biostrings): Move from here... * gnu/packages/bioconductor.scm (r-biostrings): ...to here.
2021-03-15gnu: r-biocparallel: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-biocparallel): Move from here... * gnu/packages/bioconductor.scm (r-biocparallel): ...to here.
2021-03-15gnu: r-biomart: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-biomart): Move from here... * gnu/packages/bioconductor.scm (r-biomart): ...to here.
2021-03-15gnu: r-annotationdbi: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-annotationdbi): Move from here... * gnu/packages/bioconductor.scm (r-annotationdbi): ...to here.
2021-03-15gnu: r-biobase: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-biobase): Move from here... * gnu/packages/bioconductor.scm (r-biobase): ...to here.
2021-03-15gnu: r-genomicranges: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-genomicranges): Move from here... * gnu/packages/bioconductor.scm (r-genomicranges): ...to here.
2021-03-15gnu: r-xvector: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-xvector): Move from here... * gnu/packages/bioconductor.scm (r-xvector): ...to here.
2021-03-15gnu: r-limma: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-limma): Move from here... * gnu/packages/bioconductor.scm (r-limma): ...to here.
2021-03-15gnu: r-scater: Update to 1.18.6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scater): Update to 1.18.6.
2021-03-15gnu: r-cytoml: Update to 2.2.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.2.2. [inputs]: Add zlib.
2021-03-15gnu: r-diffbind: Update to 3.0.14.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.14.
2021-03-15gnu: r-reportingtools: Update to 2.30.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.30.2.
2021-03-15gnu: r-genomeinfodb: Update to 1.26.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.4.
2021-03-15gnu: r-deseq2: Update to 1.30.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.30.1.
2021-03-15gnu: r-variantannotation: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-variantannotation): Move from here... * gnu/packages/bioconductor.scm (r-variantannotation): ...to here.
2021-03-15gnu: r-edger: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-edger): Move from here... * gnu/packages/bioconductor.scm (r-edger): ...to here.
2021-03-15gnu: r-genomeinfodb: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Move from here... * gnu/packages/bioconductor.scm (r-genomeinfodb): ...to here.
2021-03-15gnu: r-genomeinfodbdata: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Move from here... * gnu/packages/bioconductor.scm (r-genomeinfodbdata): ...to here. [source]: Use 'bioconductor-uri'.
2021-03-15gnu: r-iranges: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-iranges): Move from here... * gnu/packages/bioconductor.scm (r-iranges): ...to here.
2021-03-15gnu: r-s4vectors: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-s4vectors): Move from here... * gnu/packages/bioconductor.scm (r-s4vectors): ...to here.
2021-03-15gnu: r-bioccheck: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-bioccheck): Move from here... * gnu/packages/bioconductor.scm (r-bioccheck): ...to here.
2021-03-15gnu: r-grohmm: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-grohmm): Move from here... * gnu/packages/bioconductor.scm (r-grohmm): ...to here.
2021-03-15gnu: r-biocstyle: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-biocstyle): Move from here... * gnu/packages/bioconductor.scm (r-biocstyle): ...to here.
2021-03-15gnu: r-biocviews: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-biocviews): Move from here... * gnu/packages/bioconductor.scm (r-biocviews): ...to here.
2021-03-15gnu: r-gkmsvm: Move back to (gnu packages cran).Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gkmsvm): Move this variable from here... * gnu/packages/cran.scm (r-gkmsvm): ...to here.
2021-03-12gnu: r-systempiper: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-systempiper): Move from here... * gnu/packages/bioconductor.scm (r-systempiper): ...to here.
2021-03-12gnu: r-shortread: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-shortread): Move from here... * gnu/packages/bioconductor.scm (r-shortread): ...to here.
2021-03-12gnu: r-gostats: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-gostats): Move from here... * gnu/packages/bioconductor.scm (r-gostats): ...to here.
2021-03-12gnu: r-category: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-category): Move from here... * gnu/packages/bioconductor.scm (r-category): ...to here.
2021-03-12gnu: r-gseabase: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-gseabase): Move from here... * gnu/packages/bioconductor.scm (r-gseabase): ...to here.
2021-03-12gnu: r-rbgl: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-rbgl): Move from here... * gnu/packages/bioconductor.scm (r-rbgl): ...to here.
2021-03-12gnu: r-annotationforge: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-annotationforge): Move from here... * gnu/packages/bioconductor.scm (r-annotationforge): ...to here.
2021-03-12gnu: r-dexseq: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-dexseq): Move from here... * gnu/packages/bioconductor.scm (r-dexseq): ...to here.
2021-03-12gnu: r-deseq2: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-deseq2): Move from here... * gnu/packages/bioconductor.scm (r-deseq2): ...to here.
2021-03-12gnu: r-genefilter: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-genefilter): Move from here... * gnu/packages/bioconductor.scm (r-genefilter): ...to here.
2021-03-12gnu: r-bioassayr: Update home page.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioassayr)[home-page]: Follow permanent redirect.
2021-03-12gnu: r-bioassayr: Update to 1.28.2.zimoun
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.2.
2021-03-12gnu: r-chemminer: Update to 3.42.2.zimoun
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.2.
2021-03-12gnu: r-circrnaprofiler: Update to 1.4.2.zimoun
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.4.2.
2021-03-09gnu: r-wgcna: Update to 1.70-3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-wgcna): Update to 1.70-3.
2021-03-05gnu: Add r-circrnaprofiler.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-circrnaprofiler): New variable.
2021-03-05gnu: Add r-universalmotif.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-universalmotif): New variable.
2021-02-18gnu: Add r-chromvar.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chromvar): New variable.
2021-02-18gnu: Add r-motifmatchr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-motifmatchr): New variable.
2021-02-18gnu: Add r-tfbstools.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tfbstools): New variable.
2021-02-18gnu: Add r-cner.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cner): New variable.
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