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2018-06-02gnu: r-genomicalignments: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.16.0.
2018-06-02gnu: r-summarizedexperiment: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.10.1.
2018-06-02gnu: r-delayedarray: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.0. [propagated-inputs]: Add r-biocparallel.
2018-06-02gnu: r-rsamtools: Update to 1.32.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.32.0.
2018-06-02gnu: r-biostrings: Update to 2.48.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.48.0.
2018-06-02gnu: r-biocparallel: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.14.1.
2018-06-02gnu: r-biomart: Update to 2.36.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.36.1.
2018-06-02gnu: r-annotationdbi: Update to 1.42.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.42.1.
2018-06-02gnu: r-biobase: Update to 2.40.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.40.0.
2018-06-02gnu: r-genomicranges: Update to 1.32.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.3.
2018-06-02gnu: r-xvector: Update to 0.20.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.20.0.
2018-06-02gnu: r-limma: Update to 3.36.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.1.
2018-06-02gnu: r-variantannotation: Update to 1.26.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.26.0.
2018-06-02gnu: r-edger: Update to 3.22.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.22.2.
2018-06-02gnu: r-genomeinfodb: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.16.0.
2018-06-02gnu: r-iranges: Update to 2.14.10.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.10.
2018-06-02gnu: r-s4vectors: Update to 0.18.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.2.
2018-06-02gnu: r-dnacopy: Update to 1.54.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.54.0.
2018-06-02gnu: r-bioccheck: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.16.0.
2018-06-02gnu: r-biocstyle: Update to 2.8.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.8.2.
2018-06-02gnu: r-biocviews: Update to 1.48.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.0.
2018-06-02gnu: r-biocinstaller: Update to 1.30.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.30.0.
2018-06-02gnu: r-biocgenerics: Update to 0.26.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.26.0.
2018-06-02gnu: r-grohmm: Update to 1.14.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.14.0.
2018-06-02gnu: r-systempiper: Update to 1.14.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.14.0.
2018-06-02gnu: r-shortread: Update to 1.38.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.38.0.
2018-06-02gnu: r-gostats: Update to 2.46.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.46.0.
2018-06-02gnu: r-category: Update to 2.46.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-category): Update to 2.46.0.
2018-06-02gnu: r-gseabase: Update to 1.42.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.42.0.
2018-06-02gnu: r-rbgl: Update to 1.56.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.56.0.
2018-06-02gnu: r-annotationforge: Update to 1.22.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.22.0.
2018-06-02gnu: r-dexseq: Update to 1.26.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.26.0.
2018-06-02gnu: r-deseq2: Update to 1.20.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.20.0.
2018-06-02gnu: r-genefilter: Update to 1.62.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.62.0.
2018-06-02gnu: r-geneplotter: Update to 1.58.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.58.0.
2018-06-02gnu: r-copynumber: Update to 1.20.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-copynumber): Update to 1.20.0.
2018-06-02gnu: r-annotate: Update to 1.58.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.58.0.
2018-05-31Merge branch 'master' into core-updatesRicardo Wurmus
2018-05-31gnu: r-seurat: Update to 2.3.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.1. [propagated-inputs]: Remove r-gridextra; add r-reticulate.
2018-05-31gnu: r-vegan: Update to 2.5-2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.5-2.
2018-05-27Merge branch 'master' into core-updatesMark H Weaver
2018-05-24gnu: Add fastp.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (fastp): New variable.
2018-05-24Merge branch 'master' into core-updatesMark H Weaver
2018-05-23gnu: pigx-scrnaseq: Update to 0.0.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.4.
2018-05-22gnu: bismark: Patch bismark2report before installing.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bismark)[arguments]: Patch file before installing it.
2018-05-21Merge branch 'master' into core-updatesMark H Weaver
2018-05-19gnu: f-seq: Factorise ‘install’ phase.Tobias Geerinckx-Rice
* gnu/packages/bioinformatics.scm (f-seq)[arguments]: Let-bind more.
2018-05-17gnu: multiqc: Fix build.Tobias Geerinckx-Rice
* gnu/packages/bioinformatics.scm (multiqc)[arguments]: Add a ‘relax-requirements’ phase to fix building with python-matplotlib@2.2.
2018-05-17Merge branch 'master' into core-updatesMark H Weaver
2018-05-12gnu: diamond: Update to 0.9.22.Ben Woodcroft
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.22.
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