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2015-03-02gnu: Add crossmap.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (crossmap): New variable. * gnu/packages/patches/crossmap-allow-system-pysam.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
2015-03-02gnu: Add CLIPper.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (clipper): New variable.
2015-03-02gnu: Add MACS.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (macs): New variable.
2015-03-02gnu: Add pybedtools.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python2-pybedtools): New variable.
2015-02-20gnu: Add HTSeq.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (htseq): New variable.
2015-02-19gnu: Add RSeQC.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (rseqc): New variable.
2015-02-13gnu: Add bedops.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bedops): New variable.
2015-02-12gnu: hisat: fix build on non-x86_64.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (hisat): Add "POPCNT_CAPABILITY=0" to make-flags on architectures other than x86_64.
2015-02-10gnu: Add STAR.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (star): New variable.
2015-02-10gnu: Add HISAT.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (hisat): New variable.
2015-02-09gnu: Add flexbar.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (flexbar): New variable.
2015-02-09gnu: Add seqan.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (seqan): New variable.
2015-01-30gnu: bowtie: fix build errorsRicardo Wurmus
* gnu/packages/bioinformatics.scm (bowtie): Add 'supported-systems' field and add Makefile patch. * gnu/packages/patches/bowtie-fix-makefile.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
2014-12-19gnu: Add bowtieRicardo Wurmus
* gnu/packages/bioinformatics.scm (bowtie): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-16gnu: Add bedtoolsRicardo Wurmus
* gnu/packages/bioinformatics.scm (bedtools): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-16gnu: samtools: disable tests for non-64-bit systemsRicardo Wurmus
* gnu/packages/bioinformatics.scm (samtools): disable tests for all non-64-bit systems because of an upstream bug in the test data. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-13gnu: Add samtoolsRicardo Wurmus
* gnu/packages/bioinformatics.scm: New file * gnu-system.am (GNU_SYSTEM_MODULES): Add it Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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