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2024-05-16gnu: xdot: Bugfix: Add the directory containing "dot" to the PATH.Artyom V. Poptsov
"xdot" would always fail to run when graphviz "dot" binary is not available directly in the user system. This patch fixes it by adding graphviz binaries from the inputs to the PATH environment variable in "xdot" wrapping script. Reported by Ada Stevenson <adanskana@gmail.com> in https://debbugs.gnu.org/cgi/bugreport.cgi?bug=70910 * gnu/packages/graphviz.scm (xdot) [arguments]: Add the "bin" directory from the graphviz input to the xdot wrapping. Change-Id: Iba4bbc37daf07407ad4c18b822956fbb730c0033 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-01gnu: xdot: Update to 1.3.Artyom V. Poptsov
* gnu/packages/graphviz.scm (xdot): Update to 1.3. [source]: Download the sources from GitHub as the PyPI tarbal is missing some test files. [arguments]: Use Gexps. Add "start-xserver" and "set-test-environment" to setup test environment properly. Simplify "wrap" phase. Replace "check" phase to run "test.py". [native-inputs]: Add "gobject-introspection" and "xorg-server-for-tests". [inputs]: Add "bash-minimal", "mesa", "mesa-opencl", "python-numpy" and "vulkan-loader". Change-Id: I7a68e9f5c1b66a6539b83623a457e16edacff012 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-01-07gnu: python-uqbar: Update to 0.5.9.Troy Figiel
* gnu/packages/graphviz.scm (python-uqbar): Update to 0.5.9. [source]: Add patch for Python 3.10 compatibility. [arguments]: Remove outdated patch phase. Change-Id: I81d83efd69bd07fe12790981c48a6e82297908f0 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-18gnu: Rationalize texlive-updmap.cfg and texlive-tiny inputs.Nicolas Goaziou
TEXLIVE-UPDMAP.CFG and TEXLIVE-TINY should only be used as native inputs. Also remove texlive packages already provided by them. * doc/build.scm (pdf-manual): * gnu/packages/algebra.scm (pari-gp): * gnu/packages/bioinformatics.scm (discrover): (phyml): (velvet): * gnu/packages/chemistry.scm (yaehmop): * gnu/packages/chez.scm (stex-bootstrap): (chez-web): (chez-sockets): * gnu/packages/cran.scm (r-prereg): * gnu/packages/docbook.scm (dblatex): * gnu/packages/emacs-xyz.scm (emacs-auctex): * gnu/packages/engineering.scm (fastcap): * gnu/packages/fsf.scm (book-faif): * gnu/packages/graphviz.scm (dot2tex): * gnu/packages/maths.scm (hypre): * gnu/packages/ocaml.scm (unison): (ocaml-bibtex2html): * gnu/packages/plotutils.scm (asymptote): * gnu/packages/python-xyz.scm (python-nbconvert): (python-pypandoc): * gnu/packages/radio.scm (gnuradio): (libosmo-dsp): * gnu/packages/statistics.scm (r-with-tests): * gnu/packages/tex.scm (texlive-makecmds): (texlive-innerscript): (teximpatient): (texlive-xkeyval): Remove texlive packages already provided by TEXLIVE-UPDMAP.CFG. Don't add TEXLIVE-TINY or TEXLIVE-UPDMAP.CFG as inputs.
2023-07-18gnu: dot2tex: Fix failing tests.Nicolas Goaziou
TeX Live packages needed to build tests are moved to native inputs because propagating them may not be a good thing. Use might already be using monolithic TeX Live, or would may have their TeX Live installation on another system. * gnu/packages/graphviz.scm (dot2tex)[native-inputs]: Add TeX Live packages necessary to build documents generated during tests. [propagated-inputs]: Remove them.
2023-07-18gnu: Replace texlive-latex-base with texlive-latex-bin.Nicolas Goaziou
Although `latex-base' is clearly defined on CTAN, it isn't a proper TeX Live package. Since we're trying to follow as closely as possible this TeX distribution, we replace the package with the closest one, which is `texlive-latex-bin'. As a consequence, the #:TEXLIVE-LATEX-BASE argument becomes #:TEXLIVE-LATEX-BIN?, emphasizing the fact that the meaningful values for it are booleans. * gnu/packages/graphviz.scm (dot2tex)[propagated-inputs]: Remove TEXLIVE-GRAPHICS, TEXLIVE-LATEX-BASE. Add TEXLIVE-LATEX-BIN. * gnu/packages/plotutils.scm (asymptote)[native-inputs]: Remove TEXLIVE-LATEX-BASE, TEXLIVE-GRAPHICS, TEXLIVE-L3BACKEND. Use TEXLIVE-UPDMAP.CFG. * gnu/packages/sphinx.scm (python-sphinx)[propagated-inputs]: Remove TEXLIVE-GRAPHICS, TEXLIVE-LATEX-BASE. Add TEXLIVE-LATEX-BIN. * gnu/packages/tex.scm (texlive-latex-base): Deprecate variable. (texlive-hyphen-complete): (texlive-tex): (texlive-latex): (texlive-docstrip): (texlive-unicode-data): (texlive-hyphen-base): (texlive-tex-ini-files): (texlive-metafont): (texlive-modes): (texlive-knuth-lib): (texlive-latex-fonts): (texlive-etex): (texlive-plain): (texlive-kpathsea): (texlive-latexconfig): (texlive-latex-bin): (texlive-l3kernel): (texlive-l3backend): (texlive-l3packages): (texlive-luatex): (texlive-luahbtex): (texlive-babel): (texlive-cyrillic): (texlive-pdftex): (texlive-cm)[arguments]: Replace #:TEXLIVE-LATEX-BASE with #:TEXLIVE-LATEX-BIN?. (texlive-lm): (texlive-lua-alt-getopt): (texlive-luaotfload): (texlive-graphics-def): (texlive-graphics-cfg): Set #:TEXLIVE-LATEX-BIN? to #F. (texlive-graphics): (texlive-lualibs): (texlive-firstaid): (texlive-atveryend)[arguments]: Set #:TEXLIVE-LATEX-BIN? to #F. [native-inputs]: Add TEXLIVE-DOCSTRIP, TEXLIVE-PDFTEX. (texlive-updmap.cfg): Remove TEXLIVE-CM, TEXLIVE-GRAPHICS, TEXLIVE-LATEX-BASE. Add TEXLIVE-LATEX-BIN. (texlive-atbegshi)[arguments]: Set #:TEXLIVE-LATEX-BIN? to #F. [native-inputs]: Add TEXLIVE-DOCSTRIP, TEXLIVE-PDFTEX. [propagated-inputs]: Remove TEXLIVE-IFTEX, TEXLIVE-INFWARERR and TEXLIVE-LTXCMDS. (texlive-everyshi)[arguments]: Build package with a temporary "latex.fmt" file. (texlive-cyrillic): Set #:TEXLIVE-LATEX-BIN? to #T. * guix/build-system/texlive.scm (default-texlive-latex-base): Rename to TEXLIVE-LATEX-BIN. (lower): Set default value for TEXLIVE-LATEX-BIN? to #TRUE. * gnu/packages/statistics.scm (r-with-tests): Remove TEXLIVE-LATEX-BASE and TEXLIVE-GRAPHICS. * doc/guix.texi (Build Systems): Document #:TEXLIVE-LATEX-BIN? argument. Remove reference to #:TEXLIVE-LATEX-BASE.
2023-07-18gnu: texlive-latex-preview -> texlive-preview.Nicolas Goaziou
* gnu/packages/tex.scm (texlive-preview): New variable. (texlive-latex-preview): Deprecate variable. * gnu/packages/graphviz.scm (dot2tex)[propagated-inputs]: * gnu/packages/sphinx.scm (python-sphinx)[propagated-inputs]: Use new name.
2023-07-18gnu: texlive-latex-xkeyval -> texlive-xkeyval.Nicolas Goaziou
* gnu/packages/tex.scm (texlive-xkeyval): New variable. (texlive-latex-xkeyval): Deprecate variable. (texlive-bidi): (texlive-pstool): (texlive-polyglossia): (texlive-zref): (texlive-standalone): (texlive-todonotes): (texlive-adjustbox): (texlive-qrcode): (texlive-breakurl): * gnu/packages/graphviz.scm (dot2tex): * gnu/packages/statistics.scm (r-with-tests): Use new name.
2023-07-18gnu: texlive-latex-geometry -> texlive-geometry.Nicolas Goaziou
* gnu/packages/tex.scm (texlive-geometry): New variable. (texlive-latex-geometry): Deprecate variable. (texlive-xindy): * gnu/packages/chemistry.scm (yaehmop): * gnu/packages/cran.scm (r-prereg): * gnu/packages/graphviz.scm (dot2tex): * gnu/packages/maths.scm (hypre): * gnu/packages/plotutils.scm (asymptote): * gnu/packages/python-xyz.scm (python-nbconvert): * gnu/packages/sphinx.scm (python-sphinx): Use new name.
2023-05-24gnu: graphviz: Add "minimal" variant.Ludovic Courtès
* gnu/packages/graphviz.scm (graphviz-minimal): New variable.
2023-04-26gnu: graphviz: Remove version 2.38.Andreas Enge
This is a follow-up to commit 370cb92eaa089af19c08d9a7b4f5a96ac5b27716 . * gnu/packages/graphviz.scm: Drop imported modules. (graphviz-2.38): Remove package.
2023-04-19gnu: xdot: Complete atk to at-spi2-core transition.Ludovic Courtès
This is a followup to c000352c27f511dfb5569bef09f9b774d6100117. * gnu/packages/graphviz.scm (xdot)[arguments]: In 'wrap' phase, change "atk" to "at-spi2-core".
2023-03-31gnu: Replace all uses of atk by at-spi2-core.Josselin Poiret
* gnu/packages/animation.scm (gnash) * gnu/packages/chromium.scm (ungoogled-chromium) * gnu/packages/crates-gtk.scm (rust-atk-sys-0.14, rust-atk-sys-0.10, rust-atk-0.14, rust-gtk-0.14) * gnu/packages/gimp.scm (gimp) * gnu/packages/gnome.scm (evince, glade3, clutter, totem, rhythmbox, mutter, ghex): * gnu/packages/graphviz.scm (xdot) * gnu/packages/gtk.scm (gtk+-2, gtk+, guile-gnome, atkmm) * gnu/packages/mate.scm (mate-applets, atril, mate-control-center, mate-calc, mate-utils, eom, pluma) * gnu/packages/messaging.scm (dino) * gnu/packages/qt.scm (qtwebengine-5) * gnu/packages/rust-apps.scm (alfis) * gnu/packages/vim.scm (vim-full) * gnu/packages/vnc.scm (remmina) * gnu/packages/web.scm (castor): Replace atk by at-spi2-core. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-03-02Merge remote-tracking branch 'savannah/master' into core-updatesChristopher Baines
Conflicts: gnu/local.mk gnu/packages/autotools.scm gnu/packages/cmake.scm gnu/packages/gnuzilla.scm gnu/packages/haskell.scm gnu/packages/pdf.scm gnu/packages/python-xyz.scm gnu/packages/samba.scm gnu/packages/tex.scm gnu/packages/tls.scm gnu/packages/wxwidgets.scm
2023-02-21gnu: python-graphviz: Add native input.Andreas Enge
* gnu/packages/graphviz.scm (python-graphviz)[native-inputs]: Add python-mock. This partially reverts commit 3d388fe3d0475f2e991ae061cc1364529a97af42
2023-02-19gnu: Use HTTPS package home pages wherever possible.Tobias Geerinckx-Rice
* gnu/packages/accessibility.scm (florence)[home-page]: Use HTTPS. * gnu/packages/admin.scm (netcat, nmon)[home-page]: Likewise. * gnu/packages/algebra.scm (mpfrcx, cm, flint, fftw, r-dtt)[home-page]: Likewise. * gnu/packages/apr.scm (apr, apr-util)[home-page]: Likewise. * gnu/packages/aspell.scm (aspell-dict-it)[home-page]: Likewise. * gnu/packages/astronomy.scm (casacore, sextractor, libnova) (xplanet)[home-page]: Likewise. * gnu/packages/audio.scm (libtimidity, alsa-modular-synth, azr3, tao) (freepats, rakarrack, liblo, libshout-idjc, timidity++, libsbsms) (libmodplug, libxmp, xmp, sox, drc, gsm, gnaural) (streamripper)[home-page]: Likewise. * gnu/packages/authentication.scm (pamtester)[home-page]: Likewise. * gnu/packages/backup.scm (grsync)[home-page]: Likewise. * gnu/packages/bioconductor.scm (r-nmf, r-edger, r-limma) (r-plgem)[home-page]: Likewise. * gnu/packages/bioinformatics.scm (python-biom-format, bowtie, bowtie1) (bwa, crossmap, java-htsjdk, java-htsjdk-latest, java-picard) (java-picard-2.10.3, kaiju, proteinortho, rsem, rseqc, seek, samtools) (snap-aligner, subread, stringtie, r-centipede, prinseq, emboss, phylip) (libsbml)[home-page]: Likewise. * gnu/packages/build-tools.scm (tup)[home-page]: Likewise. * gnu/packages/cdrom.scm (libcddb, cdrdao, cdrtools) (cd-discid)[home-page]: Likewise. * gnu/packages/check.scm (cunit, python-nose) (python-pyhamcrest)[home-page]: Likewise. * gnu/packages/chemistry.scm (gromacs)[home-page]: Likewise. * gnu/packages/chez.scm (chez-fmt)[home-page]: Likewise. * gnu/packages/code.scm (lcov, uncrustify, cscope)[home-page]: Likewise. * gnu/packages/compression.scm (p7zip)[home-page]: Likewise. * gnu/packages/cran.scm (r-emdist, r-proj4, r-zoo, r-ggalluvial) (r-orgmassspecr, r-polychrome, r-partykit, r-rcpp, r-ff, r-emdbook) (r-fitdistrplus, r-linprog, r-geometry, r-dtw, r-fst, r-rjags) (r-intergraph, r-qualv, r-labelled, r-survey, r-coin, r-fmsb, r-tm) (r-corpcor, r-rmpfr, r-spatialextremes, r-longitudinal, r-genenet) (r-bayesm, r-seqinr, r-mpm, r-text2vec, r-rgdal, r-seewave, r-hdrcde) (r-shapes, r-anytime, r-stm, r-d3network, r-tam, r-directlabels) (r-spatstat-utils, r-spatstat-sparse, r-spatstat-data, r-spatstat-geom) (r-spatstat-core, r-spatstat-linnet, r-spatstat-random, r-spatstat) (r-rcpptoml, r-mlecens, r-seurat, r-mlearning, r-zooimage)[home-page]: Likewise. * gnu/packages/crates-io.scm (rust-nickel-0.11, rust-thrift-0.13) (rust-trust-dns-https-0.20, rust-trust-dns-native-tls-0.20) (rust-trust-dns-openssl-0.20, rust-trust-dns-proto-0.20) (rust-trust-dns-resolver-0.20, rust-trust-dns-rustls-0.20) (rust-uint-0.9, rust-yaml-rust-0.4)[home-page]: Likewise. * gnu/packages/crypto.scm (libdecaf, ccrypt)[home-page]: Likewise. * gnu/packages/curl.scm (curlpp)[home-page]: Likewise. * gnu/packages/databases.scm (python-pylibmc, unixodbc, wiredtiger) (libpqxx, mdbtools, virtuoso-ose, libdbi, libdbi-drivers) (soci)[home-page]: Likewise. * gnu/packages/debian.scm (apt-mirror)[home-page]: Likewise. * gnu/packages/debug.scm (remake)[home-page]: Likewise. * gnu/packages/disk.scm (sdparm, idle3-tools, duc)[home-page]: Likewise. * gnu/packages/django.scm (python-django-haystack)[home-page]: Likewise. * gnu/packages/djvu.scm (djvulibre, djview)[home-page]: Likewise. * gnu/packages/dns.scm (dnsmasq)[home-page]: Likewise. * gnu/packages/docbook.scm (dblatex, docbook2x)[home-page]: Likewise. * gnu/packages/documentation.scm (scrollkeeper)[home-page]: Likewise. * gnu/packages/ebook.scm (liblinebreak)[home-page]: Likewise. * gnu/packages/electronics.scm (xoscope)[home-page]: Likewise. * gnu/packages/emacs-xyz.scm (emacs-bbdb, emacs-caps-lock, emacs-djvu) (emacs-pabbrev, emacs-twittering-mode, emacs-filladapt, emacs-rudel) (emacs-stream, emacspeak, emacs-cc-mode, emacs-eldoc, emacs-jsonrpc) (emacs-gtk-look, emacs-xclip, emacs-slime-volleyball, emacs-minimap) (emacs-auto-dictionary-mode, emacs-persist, emacs-shell-command+) (emacs-map, emacs-xref, emacs-dictionary)[home-page]: Likewise. * gnu/packages/embedded.scm (sdcc)[home-page]: Likewise. * gnu/packages/engineering.scm (asco, libngspice, libspnav) (openctm)[home-page]: Likewise. * gnu/packages/erlang.scm (erlang-erlware-commons)[home-page]: Likewise. * gnu/packages/file-systems.scm (jfsutils, curlftpfs)[home-page]: Likewise. * gnu/packages/finance.scm (gbonds)[home-page]: Likewise. * gnu/packages/flashing-tools.scm (dfu-util, srecord)[home-page]: Likewise. * gnu/packages/fltk.scm (ntk)[home-page]: Likewise. * gnu/packages/fonts.scm (font-terminus, font-tex-gyre) (font-comic-neue)[home-page]: Likewise. * gnu/packages/fontutils.scm (ttf2pt1, potrace, libspiro)[home-page]: Likewise. * gnu/packages/fpga.scm (icestorm, gtkwave, gtkwave) (python-myhdl)[home-page]: Likewise. * gnu/packages/freedesktop.scm (libatasmart)[home-page]: Likewise. * gnu/packages/ftp.scm (weex)[home-page]: Likewise. * gnu/packages/game-development.scm (dds, python-tmx, sfxr, quesoglc) (eureka, plib)[home-page]: Likewise. * gnu/packages/games.scm (abe, alex4, armagetronad, barony) (foobillard++, golly, ltris, pipewalker, prboom-plus, trigger-rally) (cmatrix, pinball, pioneers, tennix, chromium-bsu, freeciv, kiki) (quakespasm, frotz, frotz-dumb-terminal, frotz-sdl, btanks) (flare-engine, chessx, barrage, cgoban, passage)[home-page]: Likewise. * gnu/packages/geo.scm (python-geopandas, saga)[home-page]: Likewise. * gnu/packages/gl.scm (freeglut, gl2ps)[home-page]: Likewise. * gnu/packages/gnome.scm (cogl, clutter-gtk, clutter-gst, bluefish) (workrave)[home-page]: Likewise. * gnu/packages/gnustep.scm (wmnd, wmfire, wmfire)[home-page]: Likewise. * gnu/packages/graph.scm (mscgen)[home-page]: Likewise. * gnu/packages/graphics.scm (assimp, alembic, ctl, agg) (opencsg)[home-page]: Likewise. * gnu/packages/graphviz.scm (gts)[home-page]: Likewise. * gnu/packages/gtk.scm (gtkspell3)[home-page]: Likewise. * gnu/packages/guile-xyz.scm (guile-irregex)[home-page]: Likewise. * gnu/packages/haskell-apps.scm (cpphs)[home-page]: Likewise. * gnu/packages/haskell-check.scm (ghc-hunit)[home-page]: Likewise. * gnu/packages/haskell-web.scm (ghc-http-client-restricted) (ghc-blaze-html, ghc-happstack-server, ghc-sourcemap)[home-page]: Likewise. * gnu/packages/haskell-xyz.scm (ghc-assoc, ghc-cairo, ghc-cborg) (ghc-csv, ghc-glob, ghc-gtk2hs-buildtools, ghc-hmatrix-gsl-stats) (ghc-intervalmap, ghc-lens-family-core, ghc-managed, ghc-mountpoints) (ghc-network-multicast, ghc-optional-args, ghc-regex, ghc-spoon) (ghc-transformers, ghc-turtle, ghc-utf8-light, ghc-wizards) (ghc-template-haskell, ghc-boot-th, ghc-binary-orphans) (ghc-postgresql-simple)[home-page]: Likewise. * gnu/packages/hexedit.scm (ht, bvi)[home-page]: Likewise. * gnu/packages/hunspell.scm (hunspell-dict-hu)[home-page]: Likewise. * gnu/packages/image-processing.scm (mia)[home-page]: Likewise. * gnu/packages/image-viewers.scm (geeqie, gpicview, luminance-hdr) (qiv)[home-page]: Likewise. * gnu/packages/image.scm (libuemf, devil, steghide, optipng, niftilib) (sng, mtpaint)[home-page]: Likewise. * gnu/packages/java-xml.scm (java-simple-xml, java-jaxp) (java-apache-xml-commons-resolver)[home-page]: Likewise. * gnu/packages/java.scm (java-cisd-base, java-cisd-args4j) (java-hamcrest-core, java-jsr305, java-eclipse-osgi) (java-eclipse-equinox-common, java-eclipse-core-jobs) (java-eclipse-equinox-registry, java-eclipse-equinox-app) (java-eclipse-equinox-preferences, java-eclipse-core-contenttype) (java-eclipse-text, java-treelayout, java-aopalliance, java-jeromq) (java-cdi-api)[home-page]: Likewise. * gnu/packages/jemalloc.scm (jemalloc-4.5.0)[home-page]: Likewise. * gnu/packages/julia-xyz.scm (julia-recipespipeline)[home-page]: Likewise. * gnu/packages/kde-internet.scm (kget)[home-page]: Likewise. * gnu/packages/kde-systemtools.scm (dolphin-plugins) (konsole)[home-page]: Likewise. * gnu/packages/kodi.scm (fstrcmp)[home-page]: Likewise. * gnu/packages/language.scm (hime, libchewing)[home-page]: Likewise. * gnu/packages/lego.scm (nqc)[home-page]: Likewise. * gnu/packages/lesstif.scm (lesstif)[home-page]: Likewise. * gnu/packages/libcanberra.scm (libcanberra)[home-page]: Likewise. * gnu/packages/libdaemon.scm (libdaemon)[home-page]: Likewise. * gnu/packages/libffi.scm (libffi)[home-page]: Likewise. * gnu/packages/libreoffice.scm (libwpd, libwpg, libwps)[home-page]: Likewise. * gnu/packages/libusb.scm (libmtp, gmtp)[home-page]: Likewise. * gnu/packages/linux.scm (e2fsprogs, extundelete, lsscsi, net-tools) (kbd, sysfsutils, cpuid, libpfm4)[home-page]: Likewise. * gnu/packages/lisp-check.scm (sbcl-ptester, sbcl-xlunit)[home-page]: Likewise. * gnu/packages/lisp-xyz.scm (sbcl-html-encode, sbcl-py-configparser) (sbcl-cl-utilities, sbcl-series, sbcl-uffi, sbcl-clsql, sbcl-sycamore) (sbcl-osicat, sbcl-hu.dwim.common, sbcl-caveman, sbcl-trivial-shell) (sbcl-trivial-benchmark, sbcl-screamer, sbcl-smug)[home-page]: Likewise. * gnu/packages/lisp.scm (lush2)[home-page]: Likewise. * gnu/packages/logging.scm (log4cpp)[home-page]: Likewise. * gnu/packages/lua.scm (lua-ldoc)[home-page]: Likewise. * gnu/packages/machine-learning.scm (mcl, openfst, rxcpp)[home-page]: Likewise. * gnu/packages/mail.scm (muchsync, procmail, sendmail) (opensmtpd-filter-dkimsign, crm114)[home-page]: Likewise. * gnu/packages/man.scm (libpipeline, man-db)[home-page]: Likewise. * gnu/packages/maths.scm (lapack, scalapack, hdf-eos5, itpp, gmsh) (metamath, p4est, armadillo, suitesparse, atlas, lpsolve, wcalc, why3) (frama-c)[home-page]: Likewise. * gnu/packages/mcrypt.scm (mcrypt, libmcrypt, libmhash)[home-page]: Likewise. * gnu/packages/minetest.scm (minetest-advtrains)[home-page]: Likewise. * gnu/packages/monitoring.scm (python-whisper, python-carbon) (hostscope)[home-page]: Likewise. * gnu/packages/mp3.scm (id3lib, libmp3splt, mp3splt, mpg321) (lame)[home-page]: Likewise. * gnu/packages/multiprecision.scm (mpc)[home-page]: Likewise. * gnu/packages/music.scm (aria-maestosa, lingot, setbfree, bristol) (portmidi, python-pyportmidi, zynaddsubfx, yoshimi, aj-snapshot) (schismtracker, midicsv, midicsv, qmidiarp, qmidiroute, dssi, tap-lv2) (shiru-lv2)[home-page]: Likewise. * gnu/packages/ncurses.scm (stfl)[home-page]: Likewise. * gnu/packages/networking.scm (lksctp-tools, mbuffer, ifstatus, bird) (tunctl, traceroute)[home-page]: Likewise. * gnu/packages/node-xyz.scm (node-mersenne)[home-page]: Likewise. * gnu/packages/ntp.scm (openntpd)[home-page]: Likewise. * gnu/packages/ocaml.scm (opam, hevea, ocaml-menhir, ocaml-piqilib) (ocaml-graph, cubicle)[home-page]: Likewise. * gnu/packages/opencl.scm (python-pyopencl)[home-page]: Likewise. * gnu/packages/package-management.scm (xstow, modules)[home-page]: Likewise. * gnu/packages/parallel.scm (xjobs)[home-page]: Likewise. * gnu/packages/pdf.scm (podofo, qpdf, xournal, impressive)[home-page]: Likewise. * gnu/packages/perl.scm (perl-math-vecstat, perltidy)[home-page]: Likewise. * gnu/packages/photo.scm (libpano13, enblend-enfuse, hugin)[home-page]: Likewise. * gnu/packages/plan9.scm (drawterm)[home-page]: Likewise. * gnu/packages/plotutils.scm (guile-charting, ploticus)[home-page]: Likewise. * gnu/packages/popt.scm (argtable, popt)[home-page]: Likewise. * gnu/packages/profiling.scm (otf2)[home-page]: Likewise. * gnu/packages/pulseaudio.scm (pulseaudio)[home-page]: Likewise. * gnu/packages/python-check.scm (python-mypy)[home-page]: Likewise. * gnu/packages/python-web.scm (python-cssutils) (python-translationstring)[home-page]: Likewise. * gnu/packages/python-xyz.scm (python-diskcache, python-doxyqml) (python-docutils, python-pexpect, python-importlib-resources) (python-simplegeneric, python-urwid, python-xlrd, python-xlwt) (python-pyasn1, python-pythondialog, python-tftpy, python-random2) (python-arcp, python-pyopengl, python-sortedcollections) (python-sortedcontainers, python-yapsy, python-pydispatcher) (python-posix-ipc)[home-page]: Likewise. * gnu/packages/qt.scm (qwt, libqglviewer, signond)[home-page]: Likewise. * gnu/packages/radio.scm (unixcw, gnuais)[home-page]: Likewise. * gnu/packages/raspberry-pi.scm (bcm2835)[home-page]: Likewise. * gnu/packages/rdf.scm (clucene, rasqal, redland)[home-page]: Likewise. * gnu/packages/regex.scm (tre)[home-page]: Likewise. * gnu/packages/rsync.scm (librsync)[home-page]: Likewise. * gnu/packages/ruby.scm (ruby-packnga, ruby-nokogiri, ruby-oj, ruby-ox) (ruby-sinatra, ruby-citrus, ruby-cbor, ruby-roda)[home-page]: Likewise. * gnu/packages/scheme.scm (scheme48, tinyscheme)[home-page]: Likewise. * gnu/packages/screen.scm (dtach)[home-page]: Likewise. * gnu/packages/scsi.scm (sg3-utils)[home-page]: Likewise. * gnu/packages/sdl.scm (libmikmod, sdl-pango)[home-page]: Likewise. * gnu/packages/shellutils.scm (hstr, rig)[home-page]: Likewise. * gnu/packages/simulation.scm (python-dolfin-adjoint)[home-page]: Likewise. * gnu/packages/smalltalk.scm (smalltalk)[home-page]: Likewise. * gnu/packages/speech.scm (espeak)[home-page]: Likewise. * gnu/packages/stalonetray.scm (stalonetray)[home-page]: Likewise. * gnu/packages/statistics.scm (jags, r-mass, r-class, r-lattice) (r-matrix, r-nnet, r-spatial, r-bit, r-bit64, r-digest, r-xtable) (python-statsmodels, r-ade4, r-latticeextra, r-rcurl, r-xml, r-mvtnorm) (r-robustbase, r-minqa, r-fdrtool, java-jdistlib, xlispstat)[home-page]: Likewise. * gnu/packages/swig.scm (swig)[home-page]: Likewise. * gnu/packages/task-management.scm (wtime)[home-page]: Likewise. * gnu/packages/tcl.scm (itcl, tclxml, tclx)[home-page]: Likewise. * gnu/packages/terminals.scm (libtermkey, mlterm, libvterm) (libvterm)[home-page]: Likewise. * gnu/packages/tex.scm (texlive-lm, texlive-lm-math, texlive-cs) (texlive-csplain, biber, texmaker)[home-page]: Likewise. * gnu/packages/text-editors.scm (joe)[home-page]: Likewise. * gnu/packages/textutils.scm (drm-tools, docx2txt)[home-page]: Likewise. * gnu/packages/tv.scm (tvtime)[home-page]: Likewise. * gnu/packages/unicode.scm (libunibreak)[home-page]: Likewise. * gnu/packages/upnp.scm (libupnp)[home-page]: Likewise. * gnu/packages/version-control.scm (cvs)[home-page]: Likewise. * gnu/packages/video.scm (transcode, libquicktime, mjpegtools, aalib) (liba52, libmpeg2, x265, libdv, dvdauthor, aegisub, pitivi, gavl) (dvdbackup, guvcview, video-contact-sheet)[home-page]: Likewise. * gnu/packages/virtualization.scm (bochs)[home-page]: Likewise. * gnu/packages/w3m.scm (w3m)[home-page]: Likewise. * gnu/packages/web.scm (qjson, libquvi-scripts, libquvi, quvi) (tidy-html, htmlcxx)[home-page]: Likewise. * gnu/packages/wm.scm (evilwm, menumaker)[home-page]: Likewise. * gnu/packages/wv.scm (wv)[home-page]: Likewise. * gnu/packages/wxwidgets.scm (wxsvg)[home-page]: Likewise. * gnu/packages/xdisorg.scm (mtdev, xsel)[home-page]: Likewise. * gnu/packages/xfig.scm (xfig, transfig)[home-page]: Likewise. * gnu/packages/xml.scm (openjade, python-pyxb, xmlstarlet, xmlrpc-c) (opensp)[home-page]: Likewise. * gnu/packages/xorg.scm (xf86-video-qxl)[home-page]: Likewise.
2023-02-20gnu: python-pygraphviz: Update to 1.10.Philippe SWARTVAGHER
* gnu/packages/graphviz.scm (python-pygraphviz): Update to 1.10. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-01-30gnu: texlive-fancyhdr: Use over deprecated texlive-latex-fancyhdr.Efraim Flashner
* gnu/packages/tex.scm (texlive-apa6)[propagated-inputs]: Replace texlive-latex-fancyhdr with texlive-fancyhdr.
2023-01-30gnu: texlive-graphics: Use over deprecated texlive-latex-graphics.Efraim Flashner
* gnu/packages/bioinformatics.scm (phyml)[native-inputs], * gnu/packages/chemistry.scm (yaehmop)[native-inputs], * gnu/packages/graphviz.scm (dot2tex)[propagated-inputs], * gnu/packages/maths.scm (cddlib)[native-inputs], * gnu/packages/statistics.scm (r-with-tests)[native-inputs], * gnu/packages/tex.scm (texlive-apa6)[propagated-inputs]: Replace texlive-latex-graphics with texlive-graphics.
2023-01-30Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner
Conflicts: doc/guix.texi gnu/local.mk gnu/packages/admin.scm gnu/packages/base.scm gnu/packages/chromium.scm gnu/packages/compression.scm gnu/packages/databases.scm gnu/packages/diffoscope.scm gnu/packages/freedesktop.scm gnu/packages/gnome.scm gnu/packages/gnupg.scm gnu/packages/guile.scm gnu/packages/inkscape.scm gnu/packages/llvm.scm gnu/packages/openldap.scm gnu/packages/pciutils.scm gnu/packages/ruby.scm gnu/packages/samba.scm gnu/packages/sqlite.scm gnu/packages/statistics.scm gnu/packages/syndication.scm gnu/packages/tex.scm gnu/packages/tls.scm gnu/packages/version-control.scm gnu/packages/xml.scm guix/build-system/copy.scm guix/scripts/home.scm
2022-12-13gnu: python-graphviz: Update to 0.20.1.Ricardo Wurmus
* gnu/packages/graphviz.scm (python-graphviz): Update to 0.20.1. [build-system]: Use pyproject-build-system. [arguments]: Remove custom "check" phase; add "prepare-check" phase. [native-inputs]: Remove python-mock.
2022-11-20gnu: graphviz: Update to 7.0.1 and remove input labels.Maxim Cournoyer
* gnu/packages/graphviz.scm (graphviz): Update to 7.0.1. [inputs]: Remove labels.
2022-08-27Merge branch 'staging' into core-updatesMarius Bakke
2022-08-12gnu: graphviz: Update to 5.0.0.Marius Bakke
* gnu/packages/graphviz.scm (graphviz): Update to 5.0.0. [arguments]: Remove obsolete phase.
2022-08-12gnu: graphviz: Remove input labels.Marius Bakke
* gnu/packages/graphviz.scm (graphviz)[inputs]: Remove labels.
2022-08-13gnu: graphviz: Add release-monitoring-url.Marius Bakke
* gnu/packages/graphviz.scm (graphviz)[properties]: New field.
2022-08-01gnu: xdot: Build with librsvg-for-system.Denis 'GNUtoo' Carikli
* gnu/packages/graphviz.scm (xdot)[inputs]: Replace librsvg with librsvg-for-system. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-31gnu: Remove python2-graphviz.Maxim Cournoyer
* gnu/packages/graphviz.scm (python2-graphviz): Delete variable.
2022-05-31gnu: dot2tex: Update to 2.11.3.Maxim Cournoyer
* gnu/packages/graphviz.scm (dot2tex): Update to 2.11.3. [arguments]: Remove python argument. [phases]: New argument. [native-inputs]: New field. [inputs]: Move texlive-latex-preview to... [propagated-inputs]: ... here. Replace python2-pyparsing with python-parsing. Add texlive-bin, texlive-amsmath, texlive-latex-geometry, texlive-latex-graphics, texlive-latex-base, texlive-latex-xkeyval, texlive-pgf, texlive-pstricks and texlive-xcolor.
2022-05-31gnu: Remove python2-pydot.Maxim Cournoyer
* gnu/packages/graphviz.scm (python2-pydot): Delete variable.
2022-01-18gnu: python-pydot: Update to 1.4.2.Marius Bakke
* gnu/packages/graphviz.scm (python-pydot): Update to 1.4.2. [source](patches): Remove. * gnu/packages/patches/python-pydot-regression-test.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2022-01-18gnu: python-pydot: Build with old pyparsing.Marius Bakke
* gnu/packages/graphviz.scm (python-pydot)[propagated-inputs]: Change from PYTHON-PYPARSING to PYTHON-PYPARSING-2.4.7.
2021-12-15gnu: xdot: Build with harfbuzz.terramorpha
This fixes a crash when launching xdot. * gnu/packages/graphviz.scm (xdot)[inputs]: Add harfbuzz. [arguments]: Add harfbuzz to the GI_TYPELIB_PATH wrapper in the 'wrap' phase. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-13gnu: Simplify package inputs.Ludovic Courtès
This commit was obtained by running: ./pre-inst-env guix style without any additional argument.
2021-12-13Merge branch 'master' into core-updates-frozenLudovic Courtès
2021-12-10gnu: Add gprof2dot.Giacomo Leidi via Guix-patches via
* gnu/packages/graphviz.scm (gprof2dot): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-11-11gnu: gtk: Replace gdk-pixbuf+svg by librsvg.Maxim Cournoyer
With the addition of a profile hook for computing the gdk-pixbuf loaders cache file, there is no longer a need for gdk-pixbuf+svg, and librsvg can propagate gdk-pixbuf without fear, so replace the former for the latter. The replacement was automated with the following command: $ git grep -l ',gdk-pixbuf+svg)' \ | xargs sed 's/(".*" ,gdk-pixbuf+svg)/("librsvg" ,librsvg)/' -i * gnu/packages/gtk.scm (gdk-pixbuf+svg): Delete package. (gtk+-2)[propagated-inputs]: Replace gdk-pixbuf+svg with librsvg. (gtk+)[propagated-inputs]: Likewise. * gnu/packages/gnome.scm (gdk-pixbuf+svg): Add deprecated package.
2021-11-11gnu: graphviz: Update to 2.49.0.Maxim Cournoyer
* gnu/packages/graphviz.scm (graphviz): Update to 2.49.0.
2021-11-11gnu: Move a few Python packages to (gnu packages python-build).Maxim Cournoyer
This is in prevision of updating python-pypa-build, which now requires python-packaging and adding python-tomli, which requires python-six. * gnu/packages/python-xyz.scm (python-six) (python-six-bootstrap, python2-six-bootstrap) (python-pyparsing, python2-pyparsing, python-pyparsing-2.4.7) (python-packaging-bootstrap, python2-packaging-bootstrap): Move packages to... * gnu/packages/python-build.scm: ... here. Update python-parsing to latest. * gnu/packages/python-xyz.scm (python-six, python-packaging): Adjust to inherit from their bootstrap versions.
2021-10-12Merge remote-tracking branch 'origin/master' into core-updates-frozen.Mathieu Othacehe
2021-10-04gnu: python-uqbar: Update to 0.5.6.jgart
* gnu/packages/graphviz.scm (python-uqbar): Update to 0.5.6. [arguments]: Update setup.py version requirements. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-29Merge branch 'master' into core-updates-frozenMarius Bakke
Conflicts: gnu/packages/bioinformatics.scm gnu/packages/cmake.scm gnu/packages/curl.scm gnu/packages/emacs-xyz.scm gnu/packages/gpodder.scm gnu/packages/music.scm gnu/packages/patches/glibc-bootstrap-system.patch gnu/packages/python-xyz.scm gnu/packages/shells.scm gnu/packages/statistics.scm
2021-07-29gnu: python2-pygraphviz: Remove it.Mathieu Othacehe
* gnu/packages/graphviz.scm (python2-pygraphviz): Remove it.
2021-07-29gnu: python-pygraphviz: Update to 1.7.Mathieu Othacehe
* gnu/packages/graphviz.scm (python-pygraphviz): Update to 1.7. [arguments]: Remove #:configure-flags that are no longer supported. [inputs]: Use the latest graphviz package. [native-inputs]: Add python-pytest.
2021-07-29gnu: graphviz-2.38: Fix build failure.Maxime Devos
* gnu/packages/graphviz.scm (graphviz-2.38)[arguments]<#:phases>: Make this a G-exp. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-24gnu: Use 'search-input-file' when looking for executables.Ludovic Courtès
* gnu/packages/admin.scm (isc-dhcp): Use 'search-input-file' when looking for executables. * gnu/packages/audio.scm (ableton-link): Likewise. * gnu/packages/benchmark.scm (fio): Likewise. * gnu/packages/bioinformatics.scm (roary): Likewise. (ngless): Likewise. * gnu/packages/boost.scm (boost-for-irods): Likewise. * gnu/packages/bootloaders.scm (grub): Likewise. (grub-efi): Likewise. * gnu/packages/chemistry.scm (inchi): Likewise. * gnu/packages/dictionaries.scm (ding): Likewise. * gnu/packages/dlang.scm (ldc): Likewise. * gnu/packages/education.scm (childsplay): Likewise. * gnu/packages/emacs-xyz.scm (emacs-hyperbole): Likewise. (emacs-haskell-mode): Likewise. (emacs-auctex): Likewise. (emacs-ggtags): Likewise. (emacs-graphviz-dot-mode): Likewise. (emacs-flycheck-grammalecte): Likewise. (emacs-counsel-notmuch): Likewise. (emacspeak): Likewise. (emacs-exwm): Likewise. (emacs-exwm-x): Likewise. (emacs-treemacs): Likewise. (emacs-telega): Likewise. (emacs-exiftool): Likewise. * gnu/packages/emulators.scm (higan): Likewise. * gnu/packages/engineering.scm (freehdl): Likewise. (librepcb): Likewise. * gnu/packages/entr.scm (entr): Likewise. * gnu/packages/file-systems.scm (libeatmydata): Likewise. (xfstests): Likewise. (mergerfs): Likewise. (mergerfs-tools): Likewise. * gnu/packages/finance.scm (monero-gui): Likewise. * gnu/packages/flashing-tools.scm (flashrom): Likewise. * gnu/packages/fontutils.scm (fontforge): Likewise. * gnu/packages/game-development.scm (python2-renpy): Likewise. * gnu/packages/games.scm (opensurge): Likewise. (xboard): Likewise. (hyperrogue): Likewise. (flare-game): Likewise. (chessx): Likewise. * gnu/packages/geo.scm (grass): Likewise. * gnu/packages/glib.scm (glib): Likewise. * gnu/packages/gnome.scm (mm-common): Likewise. (network-manager-openvpn): Likewise. (network-manager-vpnc): Likewise. (network-manager-openconnect): Likewise. (apostrophe): Likewise. * gnu/packages/gnupg.scm (pius): Likewise. (jetring): Likewise. * gnu/packages/gnuzilla.scm (icedove): Likewise. * gnu/packages/golang.scm (go-1.4): Likewise. * gnu/packages/graphviz.scm (xdot): Likewise. * gnu/packages/guile-xyz.scm (jupyter-guile-kernel): Likewise. * gnu/packages/haskell-xyz.scm (ghc-hindent): Likewise. * gnu/packages/ibus.scm (ibus): Likewise. * gnu/packages/image.scm (phockup): Likewise. * gnu/packages/irc.scm (quassel): Likewise. * gnu/packages/java.scm (drip): Likewise. (ant-bootstrap): Likewise. (tla2tools): Likewise. * gnu/packages/julia.scm (julia): Likewise. * gnu/packages/less.scm (lesspipe): Likewise. * gnu/packages/libreoffice.scm (libreoffice): Likewise. * gnu/packages/linux.scm (fuse): Likewise. (lm-sensors): Likewise. (bluez): Likewise. (fakeroot): Likewise. (inputattach): Likewise. * gnu/packages/lisp-xyz.scm (sbcl-cl-diskspace): Likewise. * gnu/packages/lisp.scm (lisp-repl-core-dumper): Likewise. * gnu/packages/lua.scm (fennel): Likewise. * gnu/packages/lxde.scm (spacefm): Likewise. * gnu/packages/mail.scm (public-inbox): Likewise. * gnu/packages/maths.scm (hdf-java): Likewise. (maxima): Likewise. (frama-c): Likewise. * gnu/packages/messaging.scm (libgadu): Likewise. * gnu/packages/music.scm (denemo): Likewise. (curseradio): Likewise. * gnu/packages/netpbm.scm (netpbm): Likewise. * gnu/packages/networking.scm (blueman): Likewise. (squid): Likewise. (aircrack-ng): Likewise. * gnu/packages/node.scm (node): Likewise. (node-llparse-frontend-bootstrap): Likewise. (node-llparse-bootstrap): Likewise. (llhttp-bootstrap): Likewise. (node-lts): Likewise. * gnu/packages/ocaml.scm (ocaml-4.11): Likewise. (opam): Likewise. (ocaml-graph): Likewise. * gnu/packages/orpheus.scm (orpheus): Likewise. * gnu/packages/password-utils.scm (password-store): Likewise. * gnu/packages/python.scm (pypy3): Likewise. * gnu/packages/qt.scm (qt5ct): Likewise. * gnu/packages/radio.scm (libosmo-dsp): Likewise. * gnu/packages/ruby.scm (ruby-pandoc-ruby): Likewise. * gnu/packages/rust.scm (rust-1.30): Likewise. * gnu/packages/screen.scm (byobu): Likewise. * gnu/packages/statistics.scm (r-with-tests): Likewise. * gnu/packages/suckless.scm (surf): Likewise. * gnu/packages/syndication.scm (gfeeds): Likewise. * gnu/packages/telephony.scm (mumble): Likewise. * gnu/packages/terminals.scm (alacritty): Likewise. * gnu/packages/tex.scm (texlive-bin): Likewise. * gnu/packages/uml.scm (plantuml): Likewise. * gnu/packages/version-control.scm (python-git-multimail): Likewise. (gitolite): Likewise. (hg-commitsigs): Likewise. (git-when-merged): Likewise. (git-imerge): Likewise. (gita): Likewise. * gnu/packages/video.scm (you-get): Likewise. * gnu/packages/vim.scm (eovim): Likewise. * gnu/packages/virtualization.scm (qemu): Likewise. (virt-manager): Likewise. (criu): Likewise. * gnu/packages/vpn.scm (strongswan): Likewise. (xl2tpd): Likewise. * gnu/packages/wm.scm (i3lock-fancy): Likewise. * gnu/packages/wxwidgets.scm (python-wxpython): Likewise. (python2-wxpython): Likewise. * gnu/packages/xdisorg.scm (autorandr): Likewise. * gnu/packages/xorg.scm (hackneyed-x11-cursors): Likewise. (v86d): Likewise. (mkfontdir): Likewise. (xpra): Likewise.
2021-07-23gnu: graphviz: Use HTTPS home page.Marius Bakke
* gnu/packages/graphviz.scm (graphviz)[home-page]: Use HTTPS.
2021-07-23gnu: graphviz: Update to 2.48.0.Marius Bakke
* gnu/packages/graphviz.scm (graphviz): Update to 2.48.0. [source](uri): Adjust for upstream change. [source](file-name): Remove. [inputs]: Change from GUILE-2.0 to GUILE-3.0.
2021-07-23gnu: graphviz: Don't hard code Guile version.Marius Bakke
* gnu/packages/graphviz.scm (graphviz)[arguments]: Install Guile bindings for the version of Guile provided as input.
2021-07-23gnu: graphviz: Turn arguments into a gexp.Marius Bakke
* gnu/packages/graphviz.scm (graphviz)[arguments]: Use a gexp for the modify-phases block. Remove trailing #t's while at it.