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2022-08-14gnu: Remove ‘open source’ from package descriptions.Tobias Geerinckx-Rice
Also do some (trivial) editing where appropriate. * gnu/packages/bioconductor.scm (r-anaquin, r-rcppnumerical) [description]: Remove superfluous ‘open source’. * gnu/packages/debian.scm (apt-mirror)[description]: Likewise. Add @acronym{}. Drop obscure Ubuntu for famous Trisquel. Reorder. * gnu/packages/documentation.scm (scrollkeeper)[description]: Remove superfluous ‘open systems’. Keep ‘Open Source’ in standard name. * gnu/packages/engineering.scm (freecad, cura-engine)[description]: Remove superfluous ‘open source’ and excessive puffery. * gnu/packages/firmware.scm (make-opensbi-package) [synopsis]: Remove ‘Open Source’. Use @acronym{}. [description]: Fix first sentence to follow guidelines. Use @acronym{}. * gnu/packages/game-development.scm (ioquake3, recastnavigation): [description]: Remove ‘open source’. * gnu/packages/graphics.scm (skia)[description]: Likewise. * gnu/packages/lisp-xyz.scm (sbcl-s-sysdeps)[description]: Likewise. * gnu/packages/machine-learning.scm (onnx)[description]: Likewise. Use @acronym{}. * gnu/packages/ocaml.scm (ocaml-cudf)[description]: Likewise.
2022-08-01gnu: python-umap-learn: Disable unreliable test.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-umap-learn)[arguments]: Disable test_densmap_trustworthiness_on_iris_supervised.
2022-08-01gnu: python-umap-learn: Set NUMBA_CACHE_DIR.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-umap-learn)[arguments]: Add phase to set NUMBA_CACHE_DIR.
2022-07-09gnu: Add python-pyro-ppl.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-pyro-ppl): New variable.
2022-07-09gnu: Add python-visdom.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-visdom): New variable.
2022-07-09gnu: Add python-lap.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-lap): New variable.
2022-07-08gnu: Add python-pyro-api.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-pyro-api): New variable.
2022-07-08gnu: Add python-torchfile.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-torchfile): New variable.
2022-07-07gnu: python-torchvision: Update to 0.13.0.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-torchvision): Update to 0.13.0.
2022-07-07gnu: python-pytorch: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.12.0. [arguments]: Explicitly request the use of our pybind11 package.
2022-07-07gnu: xnnpack: Update to 0.0-2.ae108ef.Ricardo Wurmus
* gnu/packages/machine-learning.scm (xnnpack): Update to 0.0-2.ae108ef. * gnu/packages/patches/xnnpack-system-libraries.patch: Update.
2022-07-07gnu: python-pytorch-for-r-torch: Explicitly keep at 1.11.0.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): Separate from python-pytorch by overriding version and source.
2022-07-06gnu: Add python-torchvision.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-torchvision): New variable.
2022-07-05gnu: liblantern: Update to 0.8.0.Ludovic Courtès
* gnu/packages/machine-learning.scm (liblantern): Update to 0.8.0.
2022-07-05gnu: python-pytorch: Update to 1.11.0.Ludovic Courtès
* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.11.0. [source](snippet): Remove now unnecessary "caffe2/onnx/backend.cc" substitution. [arguments]: Add 'remove-caffe2-onnx-scripts' phase. * gnu/packages/patches/python-pytorch-runpath.patch, gnu/packages/patches/python-pytorch-system-libraries.patch: Update.
2022-07-05gnu: onnx: Update to 1.12.0.Ludovic Courtès
* gnu/packages/machine-learning.scm (onnx): Update to 1.12.0.
2022-06-01Merge remote-tracking branch 'origin/master' into stagingEfraim Flashner
2022-05-31gnu: Remove python2-autograd.Maxim Cournoyer
* gnu/packages/machine-learning.scm (python2-autograd): Delete variable.
2022-05-31gnu: Remove python2-fastlmm.Maxim Cournoyer
* gnu/packages/machine-learning.scm (python2-fastlmm): Delete variable.
2022-05-31gnu: Remove python2-scikit-learn.Maxim Cournoyer
* gnu/packages/machine-learning.scm (python2-scikit-learn): Delete variable. (python-scikit-learn)[properties]: Remove the python2-variant property.
2022-05-16Merge branch 'master' into stagingEfraim Flashner
2022-05-15gnu: openfst: Update to 1.8.2, enable ngram extensionAurora
This extension is required by some programs that depend on openfst that aren't yet packaged. * gnu/packages/machine-learning.scm (openfst): Update to 1.8.2. [arguments]: New field. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-15gnu: openfst-1.7.3: Enable ngram-fst extension & C++14 buildAurora
The extension doesn't build in old versions of openfst such as 1.7.3 without manually setting CXXFLAGS. This package definition, including this workaround to build extensions successfully, will need to be removed once kaldi is fixed upstream and can be used with up-to-date versions of openfst. * gnu/packages/machine-learning.scm (openfst-1.7.3)[arguments]: New field. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-15gnu: kaldi: Update to dd107fd, bypass testsAurora
Either kaldi's tests are broken or openblas has reintroduced a bug: - https://github.com/kaldi-asr/kaldi/pull/4421 More testing & fixes required upstream to re-enable the tests later. For now they'll just have to be ignored. * gnu/packages/machine-learning.scm (kaldi): Update to dd107fd. [arguments]: In 'configure' phase, modify "matrix/Makefile". Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-15gnu: openfst: Add 1.7.3 for kaldiAurora
Kaldi is currently broken with openfst versions newer than 1.7.3 as it changed some of its function signatures. Once Kaldi is patched/fixed, this should be removed. Reference Issues: - https://github.com/kaldi-asr/kaldi/issues/4131 - https://github.com/kaldi-asr/kaldi/issues/4393 * gnu/packages/machine-learning.scm (openfst-1.7.3): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-12gnu: python-umap-learn: Update to 0.5.3.Maxim Cournoyer
* gnu/packages/machine-learning.scm (python-umap-learn): Update to 0.5.3. [source]: Use git. [arguments]: New field. [native-inputs]: Delete python-joblib and python-nose. Add python-pytest. [propagated-inputs]: Add python-pynndescent and python-tqdm. [synopsis]: Fix indentation. [description]: Fix typo and re-indent.
2022-05-12gnu: python-pynndescent: Update to 0.5.6.Maxim Cournoyer
* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.6. [phases]{check}: Skip the test_weighted_minkowski test. [native-inputs, propagated-inputs]: Re-indent.
2022-05-12gnu: python-scikit-learn: Parallelize build and test suite.Maxim Cournoyer
* gnu/packages/machine-learning.scm (python-scikit-learn) [phases]{configure}: New phase. {build-ext}: Add '-j' option. {check}: Add '-n' option. [native-inputs]: Add python-pytest-xdist.
2022-04-15gnu: python-hmmlearn: Remove cythonized file.Efraim Flashner
* gnu/packages/machine-learning.scm (python-hmmlearn)[source]: Add snippet to remove cythonized file.
2022-03-15gnu: liblantern: Update to 0.7.2.Ricardo Wurmus
* gnu/packages/machine-learning.scm (liblantern): Update to 0.7.2.
2022-03-15gnu: liblantern: Update to 0.7.0.Ricardo Wurmus
* gnu/packages/machine-learning.scm (liblantern): Update to 0.7.0.
2022-03-15gnu: python-pytorch-for-r-torch: Reuse python-pytorch.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): Use definition on python-pytorch, thereby updating to 1.10.2.
2022-02-11gnu: Add liblantern.Ricardo Wurmus
* gnu/packages/machine-learning.scm (liblantern): New variable.
2022-02-11gnu: Add python-pytorch-for-r-torch.Ricardo Wurmus
* gnu/packages/patches/python-pytorch-1.9.0-system-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): New variable.
2022-02-11gnu: python-pytorch: Update to 1.10.2.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.10.2.
2022-01-24gnu: xgboost: Update to 1.5.2.Vinicius Monego
* gnu/packages/machine-learning.scm (xgboost, python-xgboost): Update to 1.5.2. (python-xgboost)[arguments]: Enable previously failing test. * gnu/packages/patches/xgboost-use-system-dmlc-core.patch: Update patch. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-01-19gnu: python-scikit-learn: Update to 1.0.2.Marius Bakke
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.0.2.
2022-01-17Merge branch 'version-1.4.0'Maxim Cournoyer
With resolved conflicts in: gnu/packages/gnome.scm gnu/packages/openstack.scm gnu/packages/python-xyz.scm
2022-01-10gnu: python-scikit-learn: Remove obsolete phase.Sarah Morgensen
* gnu/packages/machine-learning.scm (python-scikit-learn)[arguments] <#:phases>: Remove 'make-files-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-01-14gnu: python-opentsne: Update to 0.6.1.Vinicius Monego
* gnu/packages/machine-learning.scm (python-opentsne): Update to 0.6.1. [source]<file-name>: Use git-file-name. [arguments]<#:phases>: Don't return #t. Add 'skip-test phase after 'unpack to skip a failing test.
2022-01-14gnu: python-pynndescent: Update to 0.5.5.Vinicius Monego
* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.5. [arguments]<#:phases>: Override 'check phase. [native-inputs]: Remove python-nose. Add python-pytest. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-01-11gnu: python-scikit-rebate: Update to 0.62.Marius Bakke
* gnu/packages/machine-learning.scm (python-scikit-rebate): Update to 0.62. [arguments]: Disable tests. [native-inputs]: Remove.
2021-12-28gnu: Add guile-aiscm-next.Ricardo Wurmus
* gnu/packages/machine-learning.scm (guile-aiscm-next): New variable.
2021-12-28gnu: guile-aiscm: Remove opencv and tensorflow.Ricardo Wurmus
* gnu/packages/machine-learning.scm (guile-aiscm)[inputs]: Remove opencv and tensorflow.
2021-12-28gnu: guile-aiscm: Remove timestamp from documentation.Ricardo Wurmus
* gnu/packages/machine-learning.scm (guile-aiscm)[arguments]: Add phase 'build-reproducibly.
2021-12-28gnu: tensorflow: Install C headers.Ricardo Wurmus
* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Add build phase 'patch-cmake-file-to-install-c-headers; move setting of LDFLAGS from 'build-pip-package to 'unpack-third-party-sources; move 'build-pip-package after 'install phase. [source]: Add patch. * gnu/packages/patches/tensorflow-c-api-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2021-12-27gnu: Add guile-aiscm.Ricardo Wurmus
* gnu/packages/machine-learning.scm (guile-aiscm): New variable.
2021-12-15gnu: tensorflow: Fix build with newer numpy.Ricardo Wurmus
* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Rename 'python3.7-compatibility to 'python3.9-compatibility and patch file to allow building with newer numpy.
2021-12-14gnu: tensorflow: Do not unpack directory.Ricardo Wurmus
* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Copy Eigen source code instead of trying to unpack it.
2021-12-13gnu: Further simplify package inputs.Ludovic Courtès
This is the result of running: ./pre-inst-env guix style --input-simplification=safe and manually undoing changes on a dozen of packages to reduce rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.)
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